pycom04g12610

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0016876
Physical Location & Seq
Forward (+)
15512749 .. 15514172
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g12610.1

Sequence Viewer

Length: 546 bp
ATGCTACATACAAATCAAACTTATTCAATTTCATCGAACTTTAAACGCGAATTTATTGAGCAAATCAAACTTATTCAATTTCATCGAACTTTAAACGTCCACCACTTAATCCAATCCTTATTTCTTTACTGTTTGCACTATATATCGATATTTAGAAGCTTCTGCAGAGAAGCCATATCTTCATCGCCATTGTTGACAAAGATGCTGGAAGGAAAAGCTGAGGTGCGGGAAACAGATATGCCAGATGACATGCAGAGCCATGCCATGGAGTTGGCTTACAAGGCTCTTGGTCTCCATGAAGTTTCTGATTTCCGATCCGTTGCTCACTATATCAAACAGAAATTTGATGAAGCATATGGCACTGCCTGGCACTGTGTAGTGGGCAAAAACTTTGGGTCCTGCATCACACATTTGAGTGGAAGTTTCATTTTCTTCCATGTGGAAACGACGGAGTTCCTCGTGTTCAAGGATTGCAAAAACTCTACTGAAAGCAGGGAAGAAGGTATTGGAGTGTTGCAGATTGAAAGCCCAGAAAGTGATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

182

Amino Acids

20.86

Weight (kDa)

5.97

Isoelectric Point (pI)

49.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 72 - 156 5.5e-31 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12840
malus_domestica MD04G1137700.v1.1 MD12G1152600.v1.1
prunus_persica Prupe.6G263700_v2.0.a1
pyrus_communis pycom04g12610
rosa_chinensis RchiOBHm_Chr3g0464841
rosa_laevigata RLG00000024670
rosa_multiflora Rmu_sc0007114.1_g000005
rosa_roxburghii Rroxscaffold_6G00415400
rosa_rugosa Rorug03G0074300
rosa_samantha Rh3BG137100 Rh3CG139700 Rh3DG138500
rosa_wichuraiana Rw3G011200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AccII CGCG 1 cut(s) 48
AciI CCGC 1 cut(s) 226
AclWI GGATC 1 cut(s) 309
AcsI RAATTY 2 cut(s) 50, 341
AfiI CCNNNNNNNGG 1 cut(s) 265
AgsI TTSAA 4 cut(s) 27, 77, 466, 524
AjnI CCWGG 1 cut(s) 365
AjuI GAANNNNNNNTTGG 4 cut(s) 105, 137, 489, 521
AluBI AGCT 2 cut(s) 159, 218
AluI AGCT 2 cut(s) 159, 218
Alw26I GTCTC 1 cut(s) 296
AlwI GGATC 1 cut(s) 309
ApoI RAATTY 2 cut(s) 50, 341
AspS9I GGNCC 1 cut(s) 396
AvaII GGWCC 1 cut(s) 396
BauI CACGAG 1 cut(s) 458
BbvCI CCTCAGC 1 cut(s) 219
BciT130I CCWGG 1 cut(s) 367
BcoDI GTCTC 1 cut(s) 296
BfmI CTRYAG 1 cut(s) 163
Bme1390I CCNGG 1 cut(s) 367
Bme18I GGWCC 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 397
BmrFI CCNGG 1 cut(s) 367
BmsI GCATC 3 cut(s) 192, 411, 529
Bpu10I CCTNAGC 1 cut(s) 219
Bsa29I ATCGAT 1 cut(s) 146
BsaI GGTCTC 1 cut(s) 296
BsaJI CCNNGG 1 cut(s) 264
Bsc4I CCNNNNNNNGG 1 cut(s) 265
BseBI CCWGG 1 cut(s) 367
BseCI ATCGAT 1 cut(s) 146
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMII CTCAG 1 cut(s) 210
Bsh1236I CGCG 1 cut(s) 48
BshVI ATCGAT 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 1 cut(s) 296
Bso31I GGTCTC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 314
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 1 cut(s) 226
BspCNI CTCAG 1 cut(s) 211
BspDI ATCGAT 1 cut(s) 146
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 397
BspMAI CTGCAG 1 cut(s) 167
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 1 cut(s) 314
BssSI CACGAG 1 cut(s) 458
BssT1I CCWWGG 1 cut(s) 264
Bst2BI CACGAG 1 cut(s) 458
Bst2UI CCWGG 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 131, 374
BstDEI CTNAG 1 cut(s) 219
BstDSI CCRYGG 1 cut(s) 264
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 1 cut(s) 317
BstMAI GTCTC 1 cut(s) 296
BstMBI GATC 1 cut(s) 314
BstMWI GCNNNNNNNGC 1 cut(s) 281
BstNI CCWGG 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 365
BstSFI CTRYAG 1 cut(s) 163
BstUI CGCG 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 271
Bsu15I ATCGAT 1 cut(s) 146
BsuTUI ATCGAT 1 cut(s) 146
BtgI CCRYGG 1 cut(s) 264
BtgZI GCGATG 1 cut(s) 168
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 360, 370
Cfr13I GGNCC 1 cut(s) 396
ClaI ATCGAT 1 cut(s) 146
CviAII CATG 5 cut(s) 250, 260, 265, 296, 437
CviJI RGCY 7 cut(s) 159, 173, 218, 258, 275, 284, 528
CviKI_1 RGCY 7 cut(s) 159, 173, 218, 258, 275, 284, 528
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 316
DpnII GATC 1 cut(s) 314
DraI TTTAAA 2 cut(s) 43, 93
Eco130I CCWWGG 1 cut(s) 264
Eco31I GGTCTC 1 cut(s) 296
Eco47I GGWCC 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 396
EcoRII CCWGG 1 cut(s) 365
EcoT14I CCWWGG 1 cut(s) 264
EcoT22I ATGCAT 1 cut(s) 544
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 5 cut(s) 253, 263, 268, 299, 440
FatI CATG 5 cut(s) 249, 259, 264, 295, 436
FauI CCCGC 1 cut(s) 219
FauNDI CATATG 1 cut(s) 355
Hin1II CATG 5 cut(s) 253, 263, 268, 299, 440
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HindIII AAGCTT 1 cut(s) 157
Hpy166II GTNNAC 2 cut(s) 100, 195
Hpy188I TCNGA 2 cut(s) 307, 314
Hpy8I GTNNAC 2 cut(s) 100, 195
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 2 cut(s) 203, 494
HpyCH4III ACNGT 2 cut(s) 131, 374
HpyCH4IV ACGT 1 cut(s) 96
HpyCH4V TGCA 7 cut(s) 136, 165, 253, 402, 474, 517, 542
HpyF10VI GCNNNNNNNGC 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 96
Hsp92II CATG 5 cut(s) 253, 263, 268, 299, 440
Kzo9I GATC 1 cut(s) 314
LpnPI CCDG 6 cut(s) 191, 255, 352, 379, 412, 478
LweI GCATC 3 cut(s) 192, 411, 529
MaeII ACGT 1 cut(s) 96
MalI GATC 1 cut(s) 316
MboI GATC 1 cut(s) 314
MboII GAAGA 3 cut(s) 171, 424, 509
MluCI AATT 4 cut(s) 27, 50, 77, 341
MnlI CCTC 2 cut(s) 214, 467
Mph1103I ATGCAT 1 cut(s) 544
MseI TTAA 3 cut(s) 42, 92, 107
MslI CAYNNNNRTG 1 cut(s) 414
MspR9I CCNGG 1 cut(s) 367
MvaI CCWGG 1 cut(s) 367
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 264
NdeI CATATG 1 cut(s) 355
NdeII GATC 1 cut(s) 314
NlaIII CATG 5 cut(s) 253, 263, 268, 299, 440
NlaIV GGNNCC 1 cut(s) 397
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 253
PflMI CCANNNNNTGG 1 cut(s) 265
PpuMI RGGWCCY 1 cut(s) 396
Psp5II RGGWCCY 1 cut(s) 396
Psp6I CCWGG 1 cut(s) 365
PspGI CCWGG 1 cut(s) 365
PspN4I GGNNCC 1 cut(s) 397
PspPI GGNCC 1 cut(s) 396
PspPPI RGGWCCY 1 cut(s) 396
PstI CTGCAG 1 cut(s) 167
RseI CAYNNNNRTG 1 cut(s) 414
SaqAI TTAA 3 cut(s) 42, 92, 107
Sau3AI GATC 1 cut(s) 314
Sau96I GGNCC 1 cut(s) 396
ScrFI CCNGG 1 cut(s) 367
SetI ASST 5 cut(s) 99, 161, 220, 225, 505
SfaNI GCATC 3 cut(s) 192, 411, 529
SfcI CTRYAG 1 cut(s) 163
SinI GGWCC 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 414
Sse9I AATT 4 cut(s) 27, 50, 77, 341
SsiI CCGC 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 365
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 2 cut(s) 131, 374
TaiI ACGT 1 cut(s) 99
TaqI TCGA 3 cut(s) 35, 85, 146
TasI AATT 4 cut(s) 27, 50, 77, 341
Tru1I TTAA 3 cut(s) 42, 92, 107
Tru9I TTAA 3 cut(s) 42, 92, 107
TscAI CASTG 2 cut(s) 367, 377
TspDTI ATGAA 6 cut(s) 21, 71, 171, 312, 363, 415
TspGWI ACGGA 2 cut(s) 307, 464
TspRI CASTG 2 cut(s) 367, 377
Van91I CCANNNNNTGG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 396
XapI RAATTY 2 cut(s) 50, 341
XceI RCATGY 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.