MD12G1152600.v1.1

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0016876
Physical Location & Seq
Forward (+)
23269733 .. 23271010
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1152600.v1.1.491

Sequence Viewer

Length: 231 bp
ATGCTGGAAGGAAACGCTGAGGTGCGGGAAACAGATATGCCAGATGACATGCAGAGCCATGCCATTGAGTTGGCTTACAACGCTCTTGATCTCTATGAAGTTTCTGATTTCCGATCCAAAGTTGATGAAGCTTATGGCACTGCCTGGCACTGTGTGAGACGAAAGAGTTCCTCGTGTTCAAGGATTGCAAAAACTCTAAGCAGGGAAGAAGCTGGGAGTACTGCAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

77

Amino Acids

8.52

Weight (kDa)

4.76

Isoelectric Point (pI)

49.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 6 - 56 5.1e-10 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016876)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g12840
malus_domestica MD04G1137700.v1.1 MD12G1152600.v1.1
prunus_persica Prupe.6G263700_v2.0.a1
pyrus_communis pycom04g12610
rosa_chinensis RchiOBHm_Chr3g0464841
rosa_laevigata RLG00000024670
rosa_multiflora Rmu_sc0007114.1_g000005
rosa_roxburghii Rroxscaffold_6G00415400
rosa_rugosa Rorug03G0074300
rosa_samantha Rh3BG137100 Rh3CG139700 Rh3DG138500
rosa_wichuraiana Rw3G011200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 108
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 1 cut(s) 180
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 2 cut(s) 131, 212
AluI AGCT 2 cut(s) 131, 212
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 108
Asp700I GAANNNNTTC 1 cut(s) 166
BauI CACGAG 1 cut(s) 172
BbvCI CCTCAGC 1 cut(s) 18
BciT130I CCWGG 1 cut(s) 145
BcoDI GTCTC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 222
BmcAI AGTACT 1 cut(s) 220
Bme1390I CCNGG 1 cut(s) 145
BmrFI CCNGG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 18
BseBI CCWGG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 9
BseYI CCCAGC 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 151
BsmBI CGTCTC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 88, 113
BspACI CCGC 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 10
BspMAI CTGCAG 1 cut(s) 226
BspPI GGATC 1 cut(s) 108
BssMI GATC 2 cut(s) 88, 113
BssSI CACGAG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 18, 197
BstKTI GATC 2 cut(s) 91, 116
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 2 cut(s) 88, 113
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 143
BstSFI CTRYAG 1 cut(s) 222
BstXI CCANNNNNNTGG 1 cut(s) 70
BtsI GCAGTG 1 cut(s) 138
BtsIMutI CAGTG 2 cut(s) 138, 148
Csp6I GTAC 1 cut(s) 219
CviAII CATG 2 cut(s) 49, 59
CviJI RGCY 4 cut(s) 57, 74, 131, 212
CviKI_1 RGCY 4 cut(s) 57, 74, 131, 212
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 2 cut(s) 18, 197
DpnI GATC 2 cut(s) 90, 115
DpnII GATC 2 cut(s) 88, 113
DraIII CACNNNGTG 1 cut(s) 154
EcoRII CCWGG 1 cut(s) 143
Esp3I CGTCTC 1 cut(s) 151
FaeI CATG 2 cut(s) 52, 62
FaiI YATR 5 cut(s) 38, 50, 60, 96, 135
FatI CATG 2 cut(s) 48, 58
FauI CCCGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 52, 62
HindIII AAGCTT 1 cut(s) 129
Hpy188I TCNGA 2 cut(s) 106, 113
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 3 cut(s) 52, 188, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 2 cut(s) 18, 197
Hsp92II CATG 2 cut(s) 52, 62
Kzo9I GATC 2 cut(s) 88, 113
LpnPI CCDG 5 cut(s) 54, 130, 157, 187, 198
MalI GATC 2 cut(s) 90, 115
MboI GATC 2 cut(s) 88, 113
MboII GAAGA 1 cut(s) 218
MnlI CCTC 2 cut(s) 13, 181
MroXI GAANNNNTTC 1 cut(s) 166
MspR9I CCNGG 1 cut(s) 145
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 2 cut(s) 88, 113
NlaIII CATG 2 cut(s) 52, 62
NspI RCATGY 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 143
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 143
PstI CTGCAG 1 cut(s) 226
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 88, 113
ScaI AGTACT 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 145
SetI ASST 3 cut(s) 24, 133, 214
SfcI CTRYAG 1 cut(s) 222
SsiI CCGC 1 cut(s) 25
StyD4I CCNGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 152
TatI WGTACW 1 cut(s) 218
TscAI CASTG 2 cut(s) 145, 155
TspDTI ATGAA 2 cut(s) 111, 141
TspRI CASTG 2 cut(s) 145, 155
XceI RCATGY 1 cut(s) 52
XmnI GAANNNNTTC 1 cut(s) 166
ZrmI AGTACT 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.