Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Reverse (-)

7879016 .. 7881266

Gene Structure 2251 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12990.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGAGTAACAATAAAGATTCTGAGAATCTTCATTTTGATCTGAACACTGGAGCTAAGATTCCATCGGTTGGCCTTGGAACATGGCATGCTGAACCAGGTGTGGTCGGGCAAGCTGTCATTGCCGCAGTGAAGAATGGCTACAGGCATATTGACTGTGCATCAGTTTATGGTAATGAAAAAGAGATAGGGGTCGCTCTGAAGGAACTATTTTCTACTGGTGTAGTGCATCGCAGTGAAATCTTTATAACATCTAAGCTATGGTGCAGTGACCATGCACCAGAAGATGTCTCTACAGCACTAAGCAAGTCTTTAGAAGACCTACAGCTTGACTATATCGATCTATACCTTATTCACTGGCCGATTCGTACAAAGCCTGGCTCAAAGGGTTTGACTCCGGAAGTCATGGCTCCATTGTGTCTTCCAGAGACATGGAATGCAATGGAAGGCCTGTACGCATCCGGTCAGGCACGTGCAATTGGTGTGAGCAACTTCTCCACAAAGAAGCTGCAAGACCTCCTTAGTTATGCAAAAGTTCCACCTGCAGTAGATCAAGTTGAGTGTCATCCTGTCTGGCAACAACATTCTCTCCACAATTTGTGCAAATCAACTGGCATTCATTTATCAGCATATTCTCCTCTCGGTTCTCCAGGGACTTGGGTGAAGGGGGAAATATTGAAGGAACCACTATTGGTGGAAATTGCTGAAAAACTTCAGAAATCACCAGCACAAGTAGCACTTCGTTGGGGAATTCAGAGTGGACATAGTGTTCTTCCAAAAAGCGTAAACGAATCAAGGATCAAGGAAAATCAAAGTTTATTTGACTGGTGCATACCTCCAGAGCTTTTCTCAAAATTCTCAGAAATTCACCAGCAAAGGCTCCTCCATGCTGATTTTGCAATCCATGAGAGCTGTGGTCCGTATAAAAGCCTTGACGAACTGTGGGATGGTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

35.17

Weight (kDa)

5.86

Isoelectric Point (pI)

47.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	24 - 287	3.7e-52	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	245
AarI	CACCTGC	1 cut(s)	547
Acc36I	ACCTGC	1 cut(s)	547
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	1 cut(s)	356
AcsI	RAATTY	4 cut(s)	747, 851, 861, 951
AcuI	CTGAAG	2 cut(s)	218, 695
AcvI	CACGTG	1 cut(s)	470
AfaI	GTAC	2 cut(s)	367, 452
AfiI	CCNNNNNNNGG	1 cut(s)	68
AgsI	TTSAA	1 cut(s)	676
AjnI	CCWGG	3 cut(s)	94, 373, 646
AloI	GAACNNNNNNTCC	2 cut(s)	750, 782
AluBI	AGCT	7 cut(s)	53, 113, 256, 325, 505, 841, 909
AluI	AGCT	7 cut(s)	53, 113, 256, 325, 505, 841, 909
Alw26I	GTCTC	2 cut(s)	292, 419
AlwI	GGATC	1 cut(s)	803
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	3 cut(s)	70, 356, 445
ApeKI	GCWGC	1 cut(s)	505
ApoI	RAATTY	4 cut(s)	747, 851, 861, 951
Asp700I	GAANNNNTTC	1 cut(s)	708
AspS9I	GGNCC	1 cut(s)	914
AsuHPI	GGTGA	3 cut(s)	670, 711, 857
AvaII	GGWCC	1 cut(s)	914
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BbrPI	CACGTG	1 cut(s)	470
BbsI	GAAGAC	2 cut(s)	321, 410
BbvI	GCAGC	1 cut(s)	492
BccI	CCATC	2 cut(s)	70, 938
BciT130I	CCWGG	3 cut(s)	96, 375, 648
BcoDI	GTCTC	2 cut(s)	292, 419
BfmI	CTRYAG	4 cut(s)	139, 291, 320, 540
BfuAI	ACCTGC	1 cut(s)	547
BisI	GCNGC	2 cut(s)	123, 506
BlsI	GCNGC	2 cut(s)	124, 507
Bme1390I	CCNGG	3 cut(s)	96, 375, 648
Bme18I	GGWCC	1 cut(s)	914
BmgT120I	GGNCC	1 cut(s)	914
BmiI	GGNNCC	3 cut(s)	408, 681, 878
BmrFI	CCNGG	3 cut(s)	96, 375, 648
BmsI	GCATC	3 cut(s)	167, 235, 464
BpiI	GAAGAC	2 cut(s)	321, 410
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpmI	CTGGAG	3 cut(s)	69, 630, 819
Bsa29I	ATCGAT	1 cut(s)	336
BsaAI	YACGTR	1 cut(s)	470
BsaJI	CCNNGG	2 cut(s)	73, 647
BsaWI	WCCGGW	2 cut(s)	394, 458
BsaXI	ACNNNNNCTCC	2 cut(s)	570, 600
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	5 cut(s)	52, 220, 359, 613, 827
Bse3DI	GCAATG	2 cut(s)	117, 444
BseAI	TCCGGA	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	96, 375, 648
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	73, 647
BseGI	GGATG	3 cut(s)	455, 562, 949
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	117, 444
BseMII	CTCAG	2 cut(s)	12, 870
BseNI	ACTGG	5 cut(s)	52, 220, 359, 613, 827
BseRI	GAGGAG	2 cut(s)	624, 869
BseXI	GCAGC	1 cut(s)	492
BsgI	GTGCAG	1 cut(s)	283
BshFI	GGCC	3 cut(s)	72, 358, 447
BshVI	ATCGAT	1 cut(s)	336
BsiSI	CCGG	2 cut(s)	395, 459
BslFI	GGGAC	1 cut(s)	664
BslI	CCNNNNNNNGG	1 cut(s)	68
BsmAI	GTCTC	2 cut(s)	292, 419
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	2 cut(s)	439, 612
BsnI	GGCC	3 cut(s)	72, 358, 447
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	4 cut(s)	37, 337, 547, 795
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	3 cut(s)	72, 358, 447
BspCNI	CTCAG	2 cut(s)	13, 869
BspDI	ATCGAT	1 cut(s)	336
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	408, 681, 878
BspMAI	CTGCAG	1 cut(s)	544
BspMI	ACCTGC	1 cut(s)	547
BspPI	GGATC	1 cut(s)	803
BsrDI	GCAATG	2 cut(s)	117, 444
BsrI	ACTGG	5 cut(s)	52, 220, 359, 613, 827
BssECI	CCNNGG	2 cut(s)	73, 647
BssMI	GATC	4 cut(s)	37, 337, 547, 795
BssT1I	CCWWGG	1 cut(s)	73
Bst2UI	CCWGG	3 cut(s)	96, 375, 648
Bst4CI	ACNGT	2 cut(s)	155, 939
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	87, 111
BstDEI	CTNAG	6 cut(s)	21, 54, 252, 299, 518, 856
BstF5I	GGATG	3 cut(s)	455, 562, 949
BstKTI	GATC	4 cut(s)	40, 340, 550, 798
BstMAI	GTCTC	2 cut(s)	292, 419
BstMBI	GATC	4 cut(s)	37, 337, 547, 795
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 731, 893
BstNI	CCWGG	3 cut(s)	96, 375, 648
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	3 cut(s)	94, 373, 646
BstSFI	CTRYAG	4 cut(s)	139, 291, 320, 540
BstV1I	GCAGC	1 cut(s)	492
BstV2I	GAAGAC	2 cut(s)	321, 410
BstXI	CCANNNNNNTGG	2 cut(s)	429, 654
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	72, 358, 447
BsuTUI	ATCGAT	1 cut(s)	336
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	3 cut(s)	455, 562, 949
BtsI	GCAGTG	3 cut(s)	132, 238, 271
BtsIMutI	CAGTG	5 cut(s)	45, 132, 238, 271, 352
BveI	ACCTGC	1 cut(s)	547
Cac8I	GCNNGC	2 cut(s)	87, 111
Cfr13I	GGNCC	1 cut(s)	914
ClaI	ATCGAT	1 cut(s)	336
CsiI	ACCWGGT	1 cut(s)	94
Csp6I	GTAC	2 cut(s)	366, 451
CviAII	CATG	7 cut(s)	81, 86, 272, 403, 429, 884, 902
CviQI	GTAC	2 cut(s)	366, 451
DdeI	CTNAG	6 cut(s)	21, 54, 252, 299, 518, 856
DpnI	GATC	4 cut(s)	39, 339, 549, 797
DpnII	GATC	4 cut(s)	37, 337, 547, 795
EaeI	YGGCCR	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	73
Eco147I	AGGCCT	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	914
Eco57I	CTGAAG	2 cut(s)	218, 695
Eco72I	CACGTG	1 cut(s)	470
EcoRI	GAATTC	1 cut(s)	747
EcoRII	CCWGG	3 cut(s)	94, 373, 646
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	7 cut(s)	84, 89, 275, 406, 432, 887, 905
FalI	AAGNNNNNCTT	6 cut(s)	292, 324, 501, 533, 720, 752
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	7 cut(s)	80, 85, 271, 402, 428, 883, 901
Fnu4HI	GCNGC	2 cut(s)	123, 506
FokI	GGATG	2 cut(s)	442, 549
Fsp4HI	GCNGC	2 cut(s)	123, 506
GluI	GCNGC	2 cut(s)	123, 506
GsuI	CTGGAG	3 cut(s)	69, 630, 819
HaeIII	GGCC	3 cut(s)	72, 358, 447
HapII	CCGG	2 cut(s)	395, 459
Hin1II	CATG	7 cut(s)	84, 89, 275, 406, 432, 887, 905
HinfI	GANTC	6 cut(s)	17, 25, 58, 361, 391, 788
HpaII	CCGG	2 cut(s)	395, 459
HphI	GGTGA	3 cut(s)	670, 711, 857
Hpy166II	GTNNAC	2 cut(s)	758, 784
Hpy188I	TCNGA	6 cut(s)	22, 42, 198, 714, 753, 859
Hpy188III	TCNNGA	3 cut(s)	395, 422, 836
Hpy8I	GTNNAC	2 cut(s)	758, 784
HpyAV	CCTTC	4 cut(s)	193, 437, 655, 670
HpyCH4III	ACNGT	2 cut(s)	155, 939
HpyCH4IV	ACGT	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 731, 893
HpyF3I	CTNAG	6 cut(s)	21, 54, 252, 299, 518, 856
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	7 cut(s)	84, 89, 275, 406, 432, 887, 905
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	37, 337, 547, 795
LmnI	GCTCC	3 cut(s)	50, 412, 882
Lsp1109I	GCAGC	1 cut(s)	492
LweI	GCATC	3 cut(s)	167, 235, 464
MabI	ACCWGGT	1 cut(s)	94
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	2 cut(s)	5, 266
MalI	GATC	4 cut(s)	39, 339, 549, 797
MboI	GATC	4 cut(s)	37, 337, 547, 795
MboII	GAAGA	6 cut(s)	20, 142, 293, 326, 410, 761
MfeI	CAATTG	1 cut(s)	474
MluCI	AATT	7 cut(s)	474, 592, 696, 747, 851, 861, 951
MlyI	GAGTC	1 cut(s)	385
MnlI	CCTC	4 cut(s)	524, 645, 843, 890
MroI	TCCGGA	1 cut(s)	394
MroXI	GAANNNNTTC	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	2 cut(s)	395, 459
MspR9I	CCNGG	3 cut(s)	96, 375, 648
MunI	CAATTG	1 cut(s)	474
Mva1269I	GAATGC	2 cut(s)	439, 612
MvaI	CCWGG	3 cut(s)	96, 375, 648
MwoI	GCNNNNNNNGC	3 cut(s)	119, 731, 893
NdeII	GATC	4 cut(s)	37, 337, 547, 795
NlaIII	CATG	7 cut(s)	84, 89, 275, 406, 432, 887, 905
NlaIV	GGNNCC	3 cut(s)	408, 681, 878
NmuCI	GTSAC	1 cut(s)	266
NspI	RCATGY	1 cut(s)	89
PaeI	GCATGC	1 cut(s)	89
PaqCI	CACCTGC	1 cut(s)	547
PceI	AGGCCT	1 cut(s)	447
PctI	GAATGC	2 cut(s)	439, 612
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	5 cut(s)	17, 25, 58, 361, 788
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	2 cut(s)	124, 507
PleI	GAGTC	1 cut(s)	385
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
PpsI	GAGTC	1 cut(s)	385
Ppu21I	YACGTR	1 cut(s)	470
PsiI	TTATAA	1 cut(s)	245
Psp6I	CCWGG	3 cut(s)	94, 373, 646
PspCI	CACGTG	1 cut(s)	470
PspGI	CCWGG	3 cut(s)	94, 373, 646
PspN4I	GGNNCC	3 cut(s)	408, 681, 878
PspPI	GGNCC	1 cut(s)	914
PstI	CTGCAG	1 cut(s)	544
RsaI	GTAC	2 cut(s)	367, 452
RsaNI	GTAC	2 cut(s)	366, 451
RseI	CAYNNNNRTG	1 cut(s)	231
SatI	GCNGC	2 cut(s)	123, 506
Sau3AI	GATC	4 cut(s)	37, 337, 547, 795
Sau96I	GGNCC	1 cut(s)	914
SchI	GAGTC	1 cut(s)	385
ScrFI	CCNGG	3 cut(s)	96, 375, 648
SexAI	ACCWGGT	1 cut(s)	94
SfaNI	GCATC	3 cut(s)	167, 235, 464
SfcI	CTRYAG	4 cut(s)	139, 291, 320, 540
SinI	GGWCC	1 cut(s)	914
SmiMI	CAYNNNNRTG	1 cut(s)	231
SphI	GCATGC	1 cut(s)	89
Sse9I	AATT	7 cut(s)	474, 592, 696, 747, 851, 861, 951
SseBI	AGGCCT	1 cut(s)	447
SsiI	CCGC	1 cut(s)	123
SspI	AATATT	1 cut(s)	672
StuI	AGGCCT	1 cut(s)	447
StyD4I	CCNGG	3 cut(s)	94, 373, 646
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	2 cut(s)	155, 939
TaiI	ACGT	1 cut(s)	472
TaqI	TCGA	1 cut(s)	336
TasI	AATT	7 cut(s)	474, 592, 696, 747, 851, 861, 951
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	5 cut(s)	17, 25, 58, 361, 788
TscAI	CASTG	5 cut(s)	52, 132, 238, 271, 359
TseFI	GTSAC	1 cut(s)	266
TseI	GCWGC	1 cut(s)	505
Tsp45I	GTSAC	1 cut(s)	266
TspDTI	ATGAA	3 cut(s)	20, 189, 605
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	5 cut(s)	52, 132, 238, 271, 359
Van91I	CCANNNNNTGG	1 cut(s)	68
VpaK11BI	GGWCC	1 cut(s)	914
XapI	RAATTY	4 cut(s)	747, 851, 861, 951
XceI	RCATGY	1 cut(s)	89
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XmnI	GAANNNNTTC	1 cut(s)	708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.