Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018026.1

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 616

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018026.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

atgagtaacgatacagaatctgaaaatctgcattttgatctgaatactggagctaagattccatctgttggccttggaacatggaaagctgaaccgggtgtggtcggtcaagctgtcattgccgcagtgaagaatggctacaggcatattgactgtgcatcagtctatggtaatgaaaaagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

61

Amino Acids

6.49

Weight (kDa)

5.17

Isoelectric Point (pI)

17.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	68
AciI	CCGC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	53, 89, 113
AluI	AGCT	3 cut(s)	53, 89, 113
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	70
AsuC2I	CCSGG	1 cut(s)	96
BarI	GAAGNNNNNNTAC	2 cut(s)	122, 154
BccI	CCATC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	139
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	96
BmsI	GCATC	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	73
Bsc4I	CCNNNNNNNGG	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	117
BseDI	CCNNGG	1 cut(s)	73
BseLI	CCNNNNNNNGG	1 cut(s)	68
BseMI	GCAATG	1 cut(s)	117
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	68
BsnI	GGCC	1 cut(s)	72
Bsp143I	GATC	1 cut(s)	37
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	72
BsrDI	GCAATG	1 cut(s)	117
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	73
BssMI	GATC	1 cut(s)	37
BssT1I	CCWWGG	1 cut(s)	73
Bst4CI	ACNGT	1 cut(s)	155
BstDEI	CTNAG	1 cut(s)	54
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	94
BstSFI	CTRYAG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
CaiI	CAGNNNCTG	1 cut(s)	20
CviAII	CATG	1 cut(s)	81
CviJI	RGCY	5 cut(s)	53, 72, 89, 113, 138
CviKI_1	RGCY	5 cut(s)	53, 72, 89, 113, 138
DdeI	CTNAG	1 cut(s)	54
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco130I	CCWWGG	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	73
ErhI	CCWWGG	1 cut(s)	73
FaeI	CATG	1 cut(s)	84
FaiI	YATR	3 cut(s)	82, 147, 168
FatI	CATG	1 cut(s)	80
Fnu4HI	GCNGC	1 cut(s)	123
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
GsuI	CTGGAG	1 cut(s)	69
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	1 cut(s)	84
HinfI	GANTC	2 cut(s)	17, 58
HpaII	CCGG	1 cut(s)	95
Hpy188I	TCNGA	2 cut(s)	22, 42
HpyCH4III	ACNGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	31, 158
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	1 cut(s)	54
Hsp92II	CATG	1 cut(s)	84
Kzo9I	GATC	1 cut(s)	37
LmnI	GCTCC	1 cut(s)	50
LpnPI	CCDG	3 cut(s)	33, 108, 127
LweI	GCATC	1 cut(s)	167
MaeIII	GTNAC	1 cut(s)	5
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	142
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	96
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	1 cut(s)	96
NdeII	GATC	1 cut(s)	37
NlaIII	CATG	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	17, 58
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	20
SatI	GCNGC	1 cut(s)	123
Sau3AI	GATC	1 cut(s)	37
ScrFI	CCNGG	1 cut(s)	96
SetI	ASST	3 cut(s)	55, 91, 115
SfaNI	GCATC	1 cut(s)	167
SfcI	CTRYAG	1 cut(s)	139
SgeI	CNNG	7 cut(s)	60, 86, 93, 107, 108, 122, 154
SsiI	CCGC	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	94
StyI	CCWWGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	155
TaqII	GACCGA	1 cut(s)	95
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	17, 58
TscAI	CASTG	1 cut(s)	132
TspRI	CASTG	1 cut(s)	132
Van91I	CCANNNNNTGG	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.