Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Reverse (-)

11814276 .. 11815537

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG139200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

ATGTGTGTGTGCACGCATGCTTGTTGTATTGATACCGAGCAGATAGGGGTTGCACTGAAGGAACTATTTTCTACTGGTGTAGTGCATCGCAGTGAAATCTTTATAACATCTAAGCTATGGTGCAGTGACCATGCACCAGAAGATGTTGCTAAGGCACTAAGCAAGTCTTTAGAAAACCTACAGCTTGACTACATTGATCTATACCTTATTCACTGGCCACTTCGTACAAAGCCCGGGTCACAGGGTTTGACTCCGGAAGTCATGGCTCCATTGTGCCTTCCAGAGACATGGAATGCAATGGAAGGCCTGTACGCATCCGGTCAGGCACGTGCAATTGGTGTGAGCAACTTCTCGACTAAGAAGCTGCAAGACCTCCTTAGTTATGCAAAAGTTCCACCTGCAGTAGATCAAGTTGAGTGTCATCCTGTCTGGCAACAACATTCTCTCCACAACTTGTGCAAATCAACTGGTATTCATTTATCGGCGTATTCTCCTCTTGGTTCTCCAGGGTCTTGGGTGAAGGGGGAAATATTGAAGGAACCACTATTGGTTGAAGTTGCTGAAAAACTTCACAAGTCACCGGCACAAGTAGCCCTTCGTTGGGGTATTCAGAGTGGACACAGTATCCTTCCAAAGAGCGTAAACGAATCAAGGATCAAGGAAAATCGAAGTTTATTTGACTGGTGCATTCCTTCAGAGCTCTTCTCAAAATTCTCAGATATTCACCAGCAAAGGCTCCTCCGTGGTGATTTTGCAATCCATGAGAGCTGTAGTCCTTATAAAAGCCTAGATGAATTGTGGGATGGTGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

271

Amino Acids

30.26

Weight (kDa)

6.05

Isoelectric Point (pI)

56.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aldo_ket_red	PF00248	13 - 236	3e-41	Aldo/keto reductase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	104, 780
AarI	CACCTGC	1 cut(s)	406
Acc36I	ACCTGC	1 cut(s)	406
AccIII	TCCGGA	1 cut(s)	253
AclWI	GGATC	1 cut(s)	662
AcoI	YGGCCR	1 cut(s)	215
AcsI	RAATTY	2 cut(s)	710, 810
AcuI	CTGAAG	2 cut(s)	77, 678
AcvI	CACGTG	1 cut(s)	329
AfaI	GTAC	2 cut(s)	226, 311
AfiI	CCNNNNNNNGG	2 cut(s)	600, 601
AgsI	TTSAA	2 cut(s)	535, 554
AjnI	CCWGG	1 cut(s)	505
AluBI	AGCT	5 cut(s)	115, 184, 364, 700, 768
AluI	AGCT	5 cut(s)	115, 184, 364, 700, 768
Alw21I	GWGCWC	2 cut(s)	14, 702
Alw26I	GTCTC	1 cut(s)	278
Alw44I	GTGCAC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	233
Aor13HI	TCCGGA	1 cut(s)	253
AoxI	GGCC	2 cut(s)	215, 304
ApaLI	GTGCAC	1 cut(s)	10
ApeKI	GCWGC	1 cut(s)	364
ApoI	RAATTY	2 cut(s)	710, 810
ArsI	GACNNNNNNTTYG	2 cut(s)	221, 253
Asp700I	GAANNNNTTC	1 cut(s)	567
AsuC2I	CCSGG	2 cut(s)	234, 235
AsuHPI	GGTGA	4 cut(s)	529, 570, 716, 758
AvaI	CYCGRG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	14
BalI	TGGCCA	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	702
BbrPI	CACGTG	1 cut(s)	329
Bbv12I	GWGCWC	2 cut(s)	14, 702
BbvI	GCAGC	1 cut(s)	351
BccI	CCATC	1 cut(s)	797
BciT130I	CCWGG	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	635
BcnI	CCSGG	2 cut(s)	234, 235
BcoDI	GTCTC	1 cut(s)	278
BfaI	CTAG	1 cut(s)	788
BfmI	CTRYAG	3 cut(s)	179, 399, 769
BfuAI	ACCTGC	1 cut(s)	406
BfuI	GTATCC	1 cut(s)	635
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme1390I	CCNGG	3 cut(s)	234, 235, 507
BmeT110I	CYCGRG	1 cut(s)	233
BmiI	GGNNCC	3 cut(s)	267, 540, 737
BmrFI	CCNGG	3 cut(s)	234, 235, 507
BmsI	GCATC	2 cut(s)	94, 323
BplI	GAGNNNNNCTC	2 cut(s)	689, 721
BpmI	CTGGAG	1 cut(s)	489
Bpu10I	CCTNAGC	1 cut(s)	150
BpuMI	CCSGG	2 cut(s)	234, 235
BsaAI	YACGTR	1 cut(s)	329
BsaJI	CCNNGG	3 cut(s)	233, 506, 742
BsaWI	WCCGGW	2 cut(s)	253, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	429, 459
Bsc4I	CCNNNNNNNGG	2 cut(s)	600, 601
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	4 cut(s)	79, 218, 472, 686
Bse3DI	GCAATG	1 cut(s)	303
BseAI	TCCGGA	1 cut(s)	253
BseBI	CCWGG	1 cut(s)	507
BseDI	CCNNGG	3 cut(s)	233, 506, 742
BseGI	GGATG	3 cut(s)	314, 421, 808
BseLI	CCNNNNNNNGG	2 cut(s)	600, 601
BseMI	GCAATG	1 cut(s)	303
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	4 cut(s)	79, 218, 472, 686
BseRI	GAGGAG	2 cut(s)	483, 728
BseSI	GKGCMC	1 cut(s)	14
BseXI	GCAGC	1 cut(s)	351
BsgI	GTGCAG	1 cut(s)	142
BshFI	GGCC	2 cut(s)	217, 306
BsiHKAI	GWGCWC	2 cut(s)	14, 702
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	4 cut(s)	234, 254, 318, 581
BslI	CCNNNNNNNGG	2 cut(s)	600, 601
BsmAI	GTCTC	1 cut(s)	278
BsmI	GAATGC	2 cut(s)	298, 687
BsnI	GGCC	2 cut(s)	217, 306
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	2 cut(s)	14, 702
Bsp13I	TCCGGA	1 cut(s)	253
Bsp143I	GATC	3 cut(s)	196, 406, 654
BspANI	GGCC	2 cut(s)	217, 306
BspCNI	CTCAG	1 cut(s)	728
BspEI	TCCGGA	1 cut(s)	253
BspLI	GGNNCC	3 cut(s)	267, 540, 737
BspMAI	CTGCAG	1 cut(s)	403
BspMI	ACCTGC	1 cut(s)	406
BspPI	GGATC	1 cut(s)	662
BspQI	GCTCTTC	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	303
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	4 cut(s)	79, 218, 472, 686
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	233, 506, 742
BssMI	GATC	3 cut(s)	196, 406, 654
Bst2UI	CCWGG	1 cut(s)	507
Bst4CI	ACNGT	1 cut(s)	623
Bst6I	CTCTTC	1 cut(s)	707
BstBAI	YACGTR	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	14, 18
BstDEI	CTNAG	6 cut(s)	111, 150, 158, 357, 377, 715
BstDSI	CCRYGG	1 cut(s)	742
BstF5I	GGATG	3 cut(s)	314, 421, 808
BstKTI	GATC	3 cut(s)	199, 409, 657
BstMAI	GTCTC	1 cut(s)	278
BstMBI	GATC	3 cut(s)	196, 406, 654
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstNI	CCWGG	1 cut(s)	507
BstNSI	RCATGY	1 cut(s)	20
BstSCI	CCNGG	3 cut(s)	232, 233, 505
BstSFI	CTRYAG	3 cut(s)	179, 399, 769
BstSLI	GKGCMC	1 cut(s)	14
BstV1I	GCAGC	1 cut(s)	351
BstXI	CCANNNNNNTGG	2 cut(s)	288, 513
BsuI	GTATCC	1 cut(s)	635
BsuRI	GGCC	2 cut(s)	217, 306
BtgI	CCRYGG	1 cut(s)	742
BtgZI	GCGATG	1 cut(s)	71
BtsCI	GGATG	3 cut(s)	314, 421, 808
BtsI	GCAGTG	2 cut(s)	97, 130
BtsIMutI	CAGTG	4 cut(s)	53, 97, 130, 211
BveI	ACCTGC	1 cut(s)	406
Cac8I	GCNNGC	2 cut(s)	14, 18
Cfr10I	RCCGGY	1 cut(s)	580
Cfr9I	CCCGGG	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	225, 310
CviAII	CATG	5 cut(s)	17, 131, 262, 288, 761
CviQI	GTAC	2 cut(s)	225, 310
DdeI	CTNAG	6 cut(s)	111, 150, 158, 357, 377, 715
DpnI	GATC	3 cut(s)	198, 408, 656
DpnII	GATC	3 cut(s)	196, 406, 654
EaeI	YGGCCR	1 cut(s)	215
Eam1104I	CTCTTC	1 cut(s)	707
EarI	CTCTTC	1 cut(s)	707
Ecl136II	GAGCTC	1 cut(s)	700
Eco147I	AGGCCT	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	702
Eco53kI	GAGCTC	1 cut(s)	700
Eco57I	CTGAAG	2 cut(s)	77, 678
Eco72I	CACGTG	1 cut(s)	329
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	700
EcoRII	CCWGG	1 cut(s)	505
EcoT38I	GRGCYC	1 cut(s)	702
FaeI	CATG	5 cut(s)	20, 134, 265, 291, 764
FalI	AAGNNNNNCTT	6 cut(s)	151, 183, 360, 392, 579, 611
FatI	CATG	5 cut(s)	16, 130, 261, 287, 760
Fnu4HI	GCNGC	1 cut(s)	365
FokI	GGATG	2 cut(s)	301, 408
FriOI	GRGCYC	1 cut(s)	702
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	1 cut(s)	788
GluI	GCNGC	1 cut(s)	365
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	217, 306
HapII	CCGG	4 cut(s)	234, 254, 318, 581
Hin1II	CATG	5 cut(s)	20, 134, 265, 291, 764
HinfI	GANTC	2 cut(s)	250, 647
HpaII	CCGG	4 cut(s)	234, 254, 318, 581
HphI	GGTGA	4 cut(s)	529, 570, 716, 758
Hpy166II	GTNNAC	3 cut(s)	12, 617, 643
Hpy188I	TCNGA	3 cut(s)	612, 697, 718
Hpy188III	TCNNGA	3 cut(s)	254, 281, 352
Hpy8I	GTNNAC	3 cut(s)	12, 617, 643
HpyAV	CCTTC	8 cut(s)	52, 287, 296, 514, 529, 605, 638, 702
HpyCH4III	ACNGT	1 cut(s)	623
HpyCH4IV	ACGT	1 cut(s)	328
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpyF3I	CTNAG	6 cut(s)	111, 150, 158, 357, 377, 715
HpySE526I	ACGT	1 cut(s)	328
Hsp92II	CATG	5 cut(s)	20, 134, 265, 291, 764
Kpn2I	TCCGGA	1 cut(s)	253
Kzo9I	GATC	3 cut(s)	196, 406, 654
LguI	GCTCTTC	1 cut(s)	707
LmnI	GCTCC	2 cut(s)	271, 741
Lsp1109I	GCAGC	1 cut(s)	351
LweI	GCATC	2 cut(s)	94, 323
MaeI	CTAG	1 cut(s)	788
MaeII	ACGT	1 cut(s)	328
MaeIII	GTNAC	3 cut(s)	125, 237, 576
MalI	GATC	3 cut(s)	198, 408, 656
MboI	GATC	3 cut(s)	196, 406, 654
MboII	GAAGA	2 cut(s)	152, 694
MfeI	CAATTG	1 cut(s)	333
MhlI	GDGCHC	2 cut(s)	14, 702
MlsI	TGGCCA	1 cut(s)	217
MluCI	AATT	4 cut(s)	333, 710, 794, 810
MluNI	TGGCCA	1 cut(s)	217
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	3 cut(s)	383, 504, 749
Mox20I	TGGCCA	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	253
MroXI	GAANNNNTTC	1 cut(s)	567
MscI	TGGCCA	1 cut(s)	217
MslI	CAYNNNNRTG	1 cut(s)	90
Msp20I	TGGCCA	1 cut(s)	217
MspI	CCGG	4 cut(s)	234, 254, 318, 581
MspR9I	CCNGG	3 cut(s)	234, 235, 507
MunI	CAATTG	1 cut(s)	333
Mva1269I	GAATGC	2 cut(s)	298, 687
MvaI	CCWGG	1 cut(s)	507
MwoI	GCNNNNNNNGC	1 cut(s)	590
NciI	CCSGG	2 cut(s)	234, 235
NdeII	GATC	3 cut(s)	196, 406, 654
NlaIII	CATG	5 cut(s)	20, 134, 265, 291, 764
NlaIV	GGNNCC	3 cut(s)	267, 540, 737
NmuCI	GTSAC	3 cut(s)	125, 237, 576
NspI	RCATGY	1 cut(s)	20
PaeI	GCATGC	1 cut(s)	20
PaqCI	CACCTGC	1 cut(s)	406
PceI	AGGCCT	1 cut(s)	306
PciSI	GCTCTTC	1 cut(s)	707
PctI	GAATGC	2 cut(s)	298, 687
PdmI	GAANNNNTTC	1 cut(s)	567
PfeI	GAWTC	1 cut(s)	647
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	244
PmaCI	CACGTG	1 cut(s)	329
PmlI	CACGTG	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	244
Ppu21I	YACGTR	1 cut(s)	329
PsiI	TTATAA	2 cut(s)	104, 780
Psp124BI	GAGCTC	1 cut(s)	702
Psp6I	CCWGG	1 cut(s)	505
PspCI	CACGTG	1 cut(s)	329
PspGI	CCWGG	1 cut(s)	505
PspN4I	GGNNCC	3 cut(s)	267, 540, 737
PstI	CTGCAG	1 cut(s)	403
RsaI	GTAC	2 cut(s)	226, 311
RsaNI	GTAC	2 cut(s)	225, 310
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	702
SapI	GCTCTTC	1 cut(s)	707
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	3 cut(s)	196, 406, 654
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	3 cut(s)	234, 235, 507
SduI	GDGCHC	2 cut(s)	14, 702
SfaNI	GCATC	2 cut(s)	94, 323
SfcI	CTRYAG	3 cut(s)	179, 399, 769
SmaI	CCCGGG	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	90
SphI	GCATGC	1 cut(s)	20
Sse9I	AATT	4 cut(s)	333, 710, 794, 810
SseBI	AGGCCT	1 cut(s)	306
SspI	AATATT	1 cut(s)	531
SspMI	CTAG	1 cut(s)	788
SstI	GAGCTC	1 cut(s)	702
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	3 cut(s)	232, 233, 505
TaaI	ACNGT	1 cut(s)	623
TaiI	ACGT	1 cut(s)	331
TaqI	TCGA	2 cut(s)	353, 667
TasI	AATT	4 cut(s)	333, 710, 794, 810
TfiI	GAWTC	1 cut(s)	647
TscAI	CASTG	4 cut(s)	60, 97, 130, 218
TseFI	GTSAC	3 cut(s)	125, 237, 576
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	3 cut(s)	125, 237, 576
TspDTI	ATGAA	2 cut(s)	464, 807
TspGWI	ACGGA	1 cut(s)	731
TspMI	CCCGGG	1 cut(s)	233
TspRI	CASTG	4 cut(s)	60, 97, 130, 218
VneI	GTGCAC	1 cut(s)	10
XapI	RAATTY	2 cut(s)	710, 810
XceI	RCATGY	1 cut(s)	20
XmaI	CCCGGG	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	567
XspI	CTAG	1 cut(s)	788

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.