Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Forward (+)

25234300 .. 25236476

Gene Structure 2177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G262200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGCATAACGAAGAAAAAACTGGAACCTTACATTTTGATCTAAACACGGGAGCTAAGATTCCATCTGTTGGCCTTGGAACATGGAAGGCTGAACCGGGTGTGGTCGGCCAAGCTGTCATCGCTGCTGTCAAGAATGGCTACAGGCATATTGACTGTGCATCAATCTACGGTAACGAAAAAGAGGTAGGGGTGGCATTGAAGGAATTATTTTCCACTGGGGTGGTGCAGCGTAGTGAACTCTTTATCACATCAAAGCTGTGGTGCAGCGACCATGCCCCTGCAGATGTCTCCAAGGCACTGAGCAAGACCCTAGAAGACCTGCAGCTTGACTACATTGATCTATATCTTATACACTGGCCGCTTCGTACAAAGCCGGGCTCAGTGGGTTTGGCTCCGGAAAACATGGCTCCATTGTGCCTTTCAGAGACATGGAATGCAATGGAGGGCCTGTATGCATCTGGTCAGGCACGTGCGATTGGGGTGAGCAACTTCTCATCTAAGAAGCTGCAAGACCTCCTTTCTTATGCAAAAGTTCCACCTGCAGTCAACCAAGTGGAGTGCCACCCTGTGTGGCAACAACCTGCTCTTCACAATTTGTGCAAATCCGCTGGTGTTCATCTATCGGCGTATTCTCCTCTGGGTTCTCCGGGCTCTTGGGTGAAGGGGGAGGTCCTGAAGGAACCAATATTGAATGAAATCGCTGAAAAACTTAAGAAGTCGCCTGCGCAAGTATGTCTTCGTTGGGGTATTCAGAGTGGACACAGTGTCCTTCCAAAGAGCGTAAACGAAAATAGGATCAAGGAAAATCTGAGTTTATTTGACTGGTCCATTCCCCCAGAGCTCTTCTCAAAAATTTCAGGCATCCACCAGCAAAGGCTCCTCCGGGGTGATTTTGCAATCCACGAGACGGCTAGTCCTTATAAAAGTCTTCAAGAACTGTGGGATGGTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

319

Amino Acids

34.91

Weight (kDa)

6.6

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	921
AarI	CACCTGC	1 cut(s)	547
Acc16I	TGCGCA	1 cut(s)	726
Acc36I	ACCTGC	3 cut(s)	327, 547, 589
AccB7I	CCANNNNNTGG	1 cut(s)	68
AccIII	TCCGGA	1 cut(s)	394
AciI	CCGC	2 cut(s)	359, 606
AclWI	GGATC	1 cut(s)	803
AcoI	YGGCCR	2 cut(s)	106, 356
AcsI	RAATTY	1 cut(s)	852
AcuI	CTGAAG	1 cut(s)	695
AcvI	CACGTG	1 cut(s)	470
AdeI	CACNNNGTG	1 cut(s)	568
AfaI	GTAC	1 cut(s)	367
AfiI	CCNNNNNNNGG	2 cut(s)	68, 907
AflII	CTTAAG	1 cut(s)	710
AgsI	TTSAA	3 cut(s)	199, 691, 932
AhdI	GACNNNNNGTC	2 cut(s)	764, 912
AleI	CACNNNNGTG	1 cut(s)	218
AluBI	AGCT	6 cut(s)	53, 113, 256, 325, 505, 841
AluI	AGCT	6 cut(s)	53, 113, 256, 325, 505, 841
Alw21I	GWGCWC	1 cut(s)	843
Alw26I	GTCTC	3 cut(s)	292, 419, 899
AlwI	GGATC	1 cut(s)	803
Aor13HI	TCCGGA	1 cut(s)	394
AoxI	GGCC	4 cut(s)	70, 106, 356, 445
ApeKI	GCWGC	5 cut(s)	122, 226, 264, 322, 505
ApoI	RAATTY	1 cut(s)	852
AspLEI	GCGC	1 cut(s)	727
AspS9I	GGNCC	3 cut(s)	445, 670, 825
AsuC2I	CCSGG	4 cut(s)	96, 375, 648, 884
AsuHPI	GGTGA	3 cut(s)	493, 670, 899
AvaII	GGWCC	2 cut(s)	670, 825
BanII	GRGCYC	3 cut(s)	380, 653, 843
BauI	CACGAG	1 cut(s)	902
BbrPI	CACGTG	1 cut(s)	470
BbsI	GAAGAC	3 cut(s)	321, 728, 920
Bbv12I	GWGCWC	1 cut(s)	843
BbvI	GCAGC	5 cut(s)	109, 238, 276, 334, 492
BccI	CCATC	2 cut(s)	70, 938
BceAI	ACGGC	1 cut(s)	924
BcnI	CCSGG	4 cut(s)	96, 375, 648, 884
BcoDI	GTCTC	3 cut(s)	292, 419, 899
BfaI	CTAG	2 cut(s)	311, 912
BfmI	CTRYAG	4 cut(s)	139, 279, 320, 540
BfrI	CTTAAG	1 cut(s)	710
BfuAI	ACCTGC	3 cut(s)	327, 547, 589
BisI	GCNGC	6 cut(s)	123, 227, 265, 323, 359, 506
BlsI	GCNGC	6 cut(s)	124, 228, 266, 324, 360, 507
Bme1390I	CCNGG	4 cut(s)	96, 375, 648, 884
Bme18I	GGWCC	2 cut(s)	670, 825
BmeRI	GACNNNNNGTC	2 cut(s)	764, 912
BmgT120I	GGNCC	3 cut(s)	445, 670, 825
BmiI	GGNNCC	5 cut(s)	25, 393, 408, 681, 878
BmrFI	CCNGG	4 cut(s)	96, 375, 648, 884
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	3 cut(s)	167, 464, 870
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	3 cut(s)	321, 728, 920
BplI	GAGNNNNNCTC	2 cut(s)	830, 862
BpuMI	CCSGG	4 cut(s)	96, 375, 648, 884
BsaAI	YACGTR	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	342
BsaJI	CCNNGG	3 cut(s)	73, 291, 883
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	2 cut(s)	434, 464
Bsc4I	CCNNNNNNNGG	2 cut(s)	68, 907
Bse1I	ACTGG	4 cut(s)	25, 220, 359, 827
Bse3DI	GCAATG	1 cut(s)	444
Bse8I	GATNNNNATC	1 cut(s)	342
BseAI	TCCGGA	1 cut(s)	394
BseDI	CCNNGG	3 cut(s)	73, 291, 883
BseGI	GGATG	2 cut(s)	861, 949
BseJI	GATNNNNATC	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	68, 907
BseMI	GCAATG	1 cut(s)	444
BseMII	CTCAG	3 cut(s)	290, 393, 800
BseNI	ACTGG	4 cut(s)	25, 220, 359, 827
BseRI	GAGGAG	2 cut(s)	624, 869
BseXI	GCAGC	5 cut(s)	109, 238, 276, 334, 492
BsgI	GTGCAG	2 cut(s)	245, 283
BshFI	GGCC	4 cut(s)	72, 108, 358, 447
BsiHKAI	GWGCWC	1 cut(s)	843
BsiSI	CCGG	5 cut(s)	95, 374, 395, 647, 883
BslI	CCNNNNNNNGG	2 cut(s)	68, 907
BsmAI	GTCTC	3 cut(s)	292, 419, 899
BsmBI	CGTCTC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	439
BsnI	GGCC	4 cut(s)	72, 108, 358, 447
Bsp1286I	GDGCHC	3 cut(s)	380, 653, 843
Bsp13I	TCCGGA	1 cut(s)	394
Bsp143I	GATC	3 cut(s)	37, 337, 795
BspACI	CCGC	2 cut(s)	359, 606
BspANI	GGCC	4 cut(s)	72, 108, 358, 447
BspCNI	CTCAG	3 cut(s)	291, 392, 801
BspEI	TCCGGA	1 cut(s)	394
BspLI	GGNNCC	5 cut(s)	25, 393, 408, 681, 878
BspMAI	CTGCAG	3 cut(s)	283, 324, 544
BspMI	ACCTGC	3 cut(s)	327, 547, 589
BspPI	GGATC	1 cut(s)	803
BspQI	GCTCTTC	2 cut(s)	591, 848
BspTI	CTTAAG	1 cut(s)	710
BsrDI	GCAATG	1 cut(s)	444
BsrI	ACTGG	4 cut(s)	25, 220, 359, 827
BssECI	CCNNGG	3 cut(s)	73, 291, 883
BssMI	GATC	3 cut(s)	37, 337, 795
BssSI	CACGAG	1 cut(s)	902
BssT1I	CCWWGG	2 cut(s)	73, 291
Bst2BI	CACGAG	1 cut(s)	902
Bst4CI	ACNGT	4 cut(s)	155, 170, 764, 939
Bst6I	CTCTTC	2 cut(s)	591, 848
BstAFI	CTTAAG	1 cut(s)	710
BstBAI	YACGTR	1 cut(s)	470
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	5 cut(s)	54, 299, 379, 498, 809
BstF5I	GGATG	2 cut(s)	861, 949
BstHHI	GCGC	1 cut(s)	727
BstKTI	GATC	3 cut(s)	40, 340, 798
BstMAI	GTCTC	3 cut(s)	292, 419, 899
BstMBI	GATC	3 cut(s)	37, 337, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	119
BstSCI	CCNGG	4 cut(s)	94, 373, 646, 882
BstSFI	CTRYAG	4 cut(s)	139, 279, 320, 540
BstV1I	GCAGC	5 cut(s)	109, 238, 276, 334, 492
BstV2I	GAAGAC	3 cut(s)	321, 728, 920
BstXI	CCANNNNNNTGG	1 cut(s)	220
BsuRI	GGCC	4 cut(s)	72, 108, 358, 447
BtgZI	GCGATG	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	861, 949
BtsIMutI	CAGTG	5 cut(s)	213, 296, 352, 387, 769
BveI	ACCTGC	3 cut(s)	327, 547, 589
Cac8I	GCNNGC	1 cut(s)	723
CfoI	GCGC	1 cut(s)	727
Cfr13I	GGNCC	3 cut(s)	445, 670, 825
Csp6I	GTAC	1 cut(s)	366
CspCI	CAANNNNNGTGG	2 cut(s)	920, 955
CviAII	CATG	4 cut(s)	81, 272, 403, 429
CviQI	GTAC	1 cut(s)	366
DdeI	CTNAG	5 cut(s)	54, 299, 379, 498, 809
DpnI	GATC	3 cut(s)	39, 339, 797
DpnII	GATC	3 cut(s)	37, 337, 795
DraIII	CACNNNGTG	1 cut(s)	568
DriI	GACNNNNNGTC	2 cut(s)	764, 912
EaeI	YGGCCR	2 cut(s)	106, 356
Eam1104I	CTCTTC	2 cut(s)	591, 848
Eam1105I	GACNNNNNGTC	2 cut(s)	764, 912
EarI	CTCTTC	2 cut(s)	591, 848
Ecl136II	GAGCTC	1 cut(s)	841
Eco130I	CCWWGG	2 cut(s)	73, 291
Eco24I	GRGCYC	3 cut(s)	380, 653, 843
Eco47I	GGWCC	2 cut(s)	670, 825
Eco53kI	GAGCTC	1 cut(s)	841
Eco57I	CTGAAG	1 cut(s)	695
Eco72I	CACGTG	1 cut(s)	470
EcoICRI	GAGCTC	1 cut(s)	841
EcoO109I	RGGNCCY	2 cut(s)	445, 670
EcoT14I	CCWWGG	2 cut(s)	73, 291
EcoT22I	ATGCAT	2 cut(s)	6, 457
EcoT38I	GRGCYC	3 cut(s)	380, 653, 843
ErhI	CCWWGG	2 cut(s)	73, 291
Esp3I	CGTCTC	1 cut(s)	899
FaeI	CATG	4 cut(s)	84, 275, 406, 432
FalI	AAGNNNNNCTT	4 cut(s)	501, 533, 720, 752
FatI	CATG	4 cut(s)	80, 271, 402, 428
Fnu4HI	GCNGC	6 cut(s)	123, 227, 265, 323, 359, 506
FokI	GGATG	1 cut(s)	848
FriOI	GRGCYC	3 cut(s)	380, 653, 843
Fsp4HI	GCNGC	6 cut(s)	123, 227, 265, 323, 359, 506
FspBI	CTAG	2 cut(s)	311, 912
FspI	TGCGCA	1 cut(s)	726
GlaI	GCGC	1 cut(s)	726
GluI	GCNGC	6 cut(s)	123, 227, 265, 323, 359, 506
HaeIII	GGCC	4 cut(s)	72, 108, 358, 447
HapII	CCGG	5 cut(s)	95, 374, 395, 647, 883
HhaI	GCGC	1 cut(s)	727
Hin1II	CATG	4 cut(s)	84, 275, 406, 432
Hin6I	GCGC	1 cut(s)	725
HinP1I	GCGC	1 cut(s)	725
HincII	GTYRAC	1 cut(s)	547
HindII	GTYRAC	1 cut(s)	547
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	5 cut(s)	95, 374, 395, 647, 883
HphI	GGTGA	3 cut(s)	493, 670, 899
Hpy166II	GTNNAC	4 cut(s)	236, 547, 758, 784
Hpy188I	TCNGA	3 cut(s)	424, 753, 810
Hpy188III	TCNNGA	4 cut(s)	130, 395, 673, 932
Hpy8I	GTNNAC	4 cut(s)	236, 547, 758, 784
HpyAV	CCTTC	5 cut(s)	79, 193, 655, 670, 779
HpyCH4III	ACNGT	4 cut(s)	155, 170, 764, 939
HpyCH4IV	ACGT	1 cut(s)	469
HpyF10VI	GCNNNNNNNGC	1 cut(s)	119
HpyF3I	CTNAG	5 cut(s)	54, 299, 379, 498, 809
HpySE526I	ACGT	1 cut(s)	469
Hsp92II	CATG	4 cut(s)	84, 275, 406, 432
HspAI	GCGC	1 cut(s)	725
Kpn2I	TCCGGA	1 cut(s)	394
Kzo9I	GATC	3 cut(s)	37, 337, 795
LguI	GCTCTTC	2 cut(s)	591, 848
LmnI	GCTCC	4 cut(s)	50, 397, 412, 882
Lsp1109I	GCAGC	5 cut(s)	109, 238, 276, 334, 492
LweI	GCATC	3 cut(s)	167, 464, 870
MaeI	CTAG	2 cut(s)	311, 912
MaeII	ACGT	1 cut(s)	469
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	39, 339, 797
MboI	GATC	3 cut(s)	37, 337, 795
MboII	GAAGA	6 cut(s)	23, 326, 578, 728, 835, 920
MhlI	GDGCHC	3 cut(s)	380, 653, 843
MluCI	AATT	3 cut(s)	203, 592, 852
MnlI	CCTC	6 cut(s)	175, 436, 524, 645, 661, 890
Mph1103I	ATGCAT	2 cut(s)	6, 457
MroI	TCCGGA	1 cut(s)	394
MseI	TTAA	1 cut(s)	711
MslI	CAYNNNNRTG	1 cut(s)	218
MspA1I	CMGCKG	1 cut(s)	608
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	5 cut(s)	95, 374, 395, 647, 883
MspR9I	CCNGG	4 cut(s)	96, 375, 648, 884
Mva1269I	GAATGC	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	119
NciI	CCSGG	4 cut(s)	96, 375, 648, 884
NdeII	GATC	3 cut(s)	37, 337, 795
NlaIII	CATG	4 cut(s)	84, 275, 406, 432
NlaIV	GGNNCC	5 cut(s)	25, 393, 408, 681, 878
NsbI	TGCGCA	1 cut(s)	726
NsiI	ATGCAT	2 cut(s)	6, 457
OliI	CACNNNNGTG	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	547
PciSI	GCTCTTC	2 cut(s)	591, 848
PctI	GAATGC	1 cut(s)	439
PfeI	GAWTC	1 cut(s)	58
PflMI	CCANNNNNTGG	1 cut(s)	68
PkrI	GCNGC	6 cut(s)	124, 228, 266, 324, 360, 507
PmaCI	CACGTG	1 cut(s)	470
PmlI	CACGTG	1 cut(s)	470
Ppu21I	YACGTR	1 cut(s)	470
PpuMI	RGGWCCY	1 cut(s)	670
PsiI	TTATAA	1 cut(s)	921
Psp124BI	GAGCTC	1 cut(s)	843
Psp5II	RGGWCCY	1 cut(s)	670
PspCI	CACGTG	1 cut(s)	470
PspN4I	GGNNCC	5 cut(s)	25, 393, 408, 681, 878
PspPI	GGNCC	3 cut(s)	445, 670, 825
PspPPI	RGGWCCY	1 cut(s)	670
PstI	CTGCAG	3 cut(s)	283, 324, 544
RsaI	GTAC	1 cut(s)	367
RsaNI	GTAC	1 cut(s)	366
RseI	CAYNNNNRTG	1 cut(s)	218
SacI	GAGCTC	1 cut(s)	843
SapI	GCTCTTC	2 cut(s)	591, 848
SaqAI	TTAA	1 cut(s)	711
SatI	GCNGC	6 cut(s)	123, 227, 265, 323, 359, 506
Sau3AI	GATC	3 cut(s)	37, 337, 795
Sau96I	GGNCC	3 cut(s)	445, 670, 825
ScrFI	CCNGG	4 cut(s)	96, 375, 648, 884
SduI	GDGCHC	3 cut(s)	380, 653, 843
SfaNI	GCATC	3 cut(s)	167, 464, 870
SfcI	CTRYAG	4 cut(s)	139, 279, 320, 540
SinI	GGWCC	2 cut(s)	670, 825
SmiMI	CAYNNNNRTG	1 cut(s)	218
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	3 cut(s)	203, 592, 852
SsiI	CCGC	2 cut(s)	359, 606
SspI	AATATT	1 cut(s)	687
SspMI	CTAG	2 cut(s)	311, 912
SstI	GAGCTC	1 cut(s)	843
StyD4I	CCNGG	4 cut(s)	94, 373, 646, 882
StyI	CCWWGG	2 cut(s)	73, 291
TaaI	ACNGT	4 cut(s)	155, 170, 764, 939
TaiI	ACGT	1 cut(s)	472
TasI	AATT	3 cut(s)	203, 592, 852
TauI	GCSGC	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	1 cut(s)	711
Tru9I	TTAA	1 cut(s)	711
TscAI	CASTG	5 cut(s)	220, 303, 359, 387, 769
TseI	GCWGC	5 cut(s)	122, 226, 264, 322, 505
TspDTI	ATGAA	2 cut(s)	605, 708
TspRI	CASTG	5 cut(s)	220, 303, 359, 387, 769
Van91I	CCANNNNNTGG	1 cut(s)	68
Vha464I	CTTAAG	1 cut(s)	710
VpaK11BI	GGWCC	2 cut(s)	670, 825
XapI	RAATTY	1 cut(s)	852
XspI	CTAG	2 cut(s)	311, 912
Zsp2I	ATGCAT	2 cut(s)	6, 457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.