Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0010654

Physical Location & Seq

Genomic Coordinates Forward (+)

15371812 .. 15375035

Gene Structure 3224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12390.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCCTACTTTGGCTGGCTCGACTTCAGAGTCGAACCATTCCCACGCCATTTCTCACTCTCTCTGTCTGTCTCTCTCTCTCTCTGCACGCCAAAAGTCGGCAATCAGCGAGCCTCCGTCCCGCCACCAACGCCGACGCTGTTCATAGATCGTAAGCCGTTTGTCGAGGGCCATCCCTTCCCCACTTCGCTCAATTACCGGAGTACGCGAATCGAGACAACACAATCCTCGGCGACTAAGATGGGCGAAAACAAATCCGAAACTTTGTATTTTGATCTGAATACGGGAGCTAAGATCCCATCTGTTGGTCTTGGAACATGGAAGGCTGAACCAGGTGTGGTCGGTCAAGCTGTCATCGCTGCAGTCAAGAATGGCTACAGGCATATTGACTGTGCATCAGTCTACGGTAACGAAAAAGAGGTAGGAGTGGCATTGAAGGAACTATTTTCAACTGGCGTAGTACAGCGTAGCGAACTCTTTATTACATCTAAGTTATGGTGCAGTGACCATGCCCCTGAAGACGTATCTAAGGCACTGAGCAAGACTTTAGAAGATCTGCAGCTTGATTATATTGATCTATATCTTATACACTATCCACTTCGTACAAAACGAGGCTCAGTAGGTTTCGCTCCTGAAGTCATGGTTCCATTGTGCCTTCCAGAGACTTGGAATGCAATGGAGGGCCTGTACGCATCTGGTCAGGCACGAGCAGTCGGGGTGAGCAACTACTCGTCTAAGAAGCTGCAGGACCTCCTTTCTTATGCAAAAGTTCCACCTGCAGTAAATCAAGTGGAGTGCCACCCTATCTGGCAGCAACCGGCTCTTCACAATTTGTGCAAATCTGCTGGAATTCATCTGTCGGCATATTCTCCTCTGGGTTCTCCAGGGGTTTTGATGAAGGGGGAAGTTCTGAAGGATCCAGTACTGAATGAAATCGCCAAGAAACTCAACAAGTCAACCGCGCAAGTATGTCTTCGTTGGGGCATTCAGAGTGGACACAGCGTCCTTCCAAAGAGTGTAAATGAAAGTAGGATCAAGGAAAATCTAAGCTTATTCGACTGGTCCATTCCCCCAGAGCTCTTCTCGAAAATTTCGGGAATCCACCAGCAAAGGCTCCTACGGGGTGATTTCGTAGTCCATGAGAGCTTGAGTCCTTATAAAAGCGTTGAAGAACTGTGGGATGGTGAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001101 GO:0003674 GO:0003824 GO:0004033 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006970 GO:0008106 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0010035 GO:0016229 GO:0016491 GO:0016614 GO:0016616 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048037 GO:0050661 GO:0050662 GO:0050896 GO:0055114 GO:0070401 GO:0097159 GO:1901265 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00010 ko00040 ko00051 ko00052 ko00561 ko00790 ko00930 ko01100 ko01110 ko01120 ko01130 ko01220 map00010 map00040 map00051 map00052 map00561 map00790 map00930 map01100 map01110 map01120 map01130 map01220

Pfam Domains

Protein Families

Aldo_ket_red

Protein Analysis

398

Amino Acids

43.91

Weight (kDa)

8.06

Isoelectric Point (pI)

47.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010654)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760 AT2G37760
fragaria_vesca	FvH4_6g12990
malus_domestica	MD00G1141200.v1.1
prunus_persica	Prupe.6G262200_v2.0.a1 Prupe.6G262200_v2.0.a1
pyrus_communis	pycom04g12390
rosa_chinensis	RchiOBHm_Chr3g0465121
rosa_multiflora	Rmu_sc0018026.1_g000001
rosa_roxburghii	Rroxscaffold_6G00415230
rosa_rugosa	Rorug03G0075600 Rorug03G0075600
rosa_samantha	Rh3BG139200 Rh3DG140500
rosa_wichuraiana	Rw3G011390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1158
AarI	CACCTGC	1 cut(s)	784
AasI	GACNNNNNNGTC	1 cut(s)	29
Acc36I	ACCTGC	1 cut(s)	784
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	402
AccII	CGCG	2 cut(s)	208, 962
AciI	CCGC	2 cut(s)	122, 960
AclWI	GGATC	4 cut(s)	289, 911, 924, 1040
AcsI	RAATTY	2 cut(s)	849, 1089
AcuI	CTGAAG	4 cut(s)	10, 537, 654, 932
AfaI	GTAC	5 cut(s)	205, 462, 604, 689, 924
AfiI	CCNNNNNNNGG	2 cut(s)	98, 305
AgsI	TTSAA	3 cut(s)	436, 450, 1169
AhdI	GACNNNNNGTC	1 cut(s)	1001
AjnI	CCWGG	2 cut(s)	331, 883
AluBI	AGCT	7 cut(s)	290, 350, 562, 742, 1050, 1078, 1146
AluI	AGCT	7 cut(s)	290, 350, 562, 742, 1050, 1078, 1146
Alw21I	GWGCWC	1 cut(s)	1080
Alw26I	GTCTC	3 cut(s)	76, 209, 656
AlwI	GGATC	4 cut(s)	289, 911, 924, 1040
AoxI	GGCC	3 cut(s)	3, 169, 682
ApeKI	GCWGC	4 cut(s)	359, 559, 742, 811
ApoI	RAATTY	2 cut(s)	849, 1089
AspLEI	GCGC	1 cut(s)	964
AspS9I	GGNCC	4 cut(s)	169, 682, 748, 1062
AsuHPI	GGTGA	2 cut(s)	730, 1136
AvaII	GGWCC	2 cut(s)	748, 1062
BamHI	GGATCC	1 cut(s)	916
BanII	GRGCYC	1 cut(s)	1080
BauI	CACGAG	1 cut(s)	705
BbsI	GAAGAC	2 cut(s)	525, 965
Bbv12I	GWGCWC	1 cut(s)	1080
BbvI	GCAGC	4 cut(s)	346, 571, 729, 823
BccI	CCATC	4 cut(s)	180, 235, 307, 1175
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	2 cut(s)	333, 885
BcoDI	GTCTC	3 cut(s)	76, 209, 656
BfmI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
BfuAI	ACCTGC	1 cut(s)	784
BglII	AGATCT	1 cut(s)	553
BisI	GCNGC	4 cut(s)	360, 560, 743, 812
BlsI	GCNGC	4 cut(s)	361, 561, 744, 813
BmcAI	AGTACT	1 cut(s)	924
Bme1390I	CCNGG	2 cut(s)	333, 885
Bme18I	GGWCC	2 cut(s)	748, 1062
BmeRI	GACNNNNNGTC	1 cut(s)	1001
BmgT120I	GGNCC	4 cut(s)	169, 682, 748, 1062
BmiI	GGNNCC	3 cut(s)	645, 918, 1115
BmrFI	CCNGG	2 cut(s)	333, 885
BmsI	GCATC	2 cut(s)	404, 701
BpiI	GAAGAC	2 cut(s)	525, 965
BplI	GAGNNNNNCTC	2 cut(s)	1067, 1099
BpmI	CTGGAG	1 cut(s)	867
BpuEI	CTTGAG	1 cut(s)	1168
BsaBI	GATNNNNATC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	228, 884
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	671, 701
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 305
Bse118I	RCCGGY	1 cut(s)	817
Bse1I	ACTGG	3 cut(s)	457, 920, 1064
Bse3DI	GCAATG	1 cut(s)	681
Bse8I	GATNNNNATC	1 cut(s)	579
BseBI	CCWGG	2 cut(s)	333, 885
BseDI	CCNNGG	2 cut(s)	228, 884
BseGI	GGATG	2 cut(s)	172, 1186
BseJI	GATNNNNATC	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	98, 305
BseMI	GCAATG	1 cut(s)	681
BseMII	CTCAG	2 cut(s)	527, 630
BseNI	ACTGG	3 cut(s)	457, 920, 1064
BseRI	GAGGAG	1 cut(s)	861
BseXI	GCAGC	4 cut(s)	346, 571, 729, 823
BsgI	GTGCAG	2 cut(s)	70, 520
Bsh1236I	CGCG	2 cut(s)	208, 962
BshFI	GGCC	3 cut(s)	5, 171, 684
BsiHKAI	GWGCWC	1 cut(s)	1080
BsiSI	CCGG	2 cut(s)	199, 818
BslFI	GGGAC	1 cut(s)	104
BslI	CCNNNNNNNGG	2 cut(s)	98, 305
BsmAI	GTCTC	3 cut(s)	76, 209, 656
BsmFI	GGGAC	1 cut(s)	104
BsmI	GAATGC	2 cut(s)	676, 984
BsnI	GGCC	3 cut(s)	5, 171, 684
Bsp1286I	GDGCHC	1 cut(s)	1080
Bsp143I	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BspACI	CCGC	2 cut(s)	122, 960
BspANI	GGCC	3 cut(s)	5, 171, 684
BspCNI	CTCAG	2 cut(s)	528, 629
BspFNI	CGCG	2 cut(s)	208, 962
BspLI	GGNNCC	3 cut(s)	645, 918, 1115
BspMAI	CTGCAG	4 cut(s)	364, 561, 747, 781
BspMI	ACCTGC	1 cut(s)	784
BspPI	GGATC	4 cut(s)	289, 911, 924, 1040
BspQI	GCTCTTC	2 cut(s)	828, 1085
BsrDI	GCAATG	1 cut(s)	681
BsrFI	RCCGGY	1 cut(s)	817
BsrI	ACTGG	3 cut(s)	457, 920, 1064
BssAI	RCCGGY	1 cut(s)	817
BssECI	CCNNGG	2 cut(s)	228, 884
BssMI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BssSI	CACGAG	1 cut(s)	705
Bst2BI	CACGAG	1 cut(s)	705
Bst2UI	CCWGG	2 cut(s)	333, 885
Bst4CI	ACNGT	3 cut(s)	392, 407, 1176
Bst6I	CTCTTC	2 cut(s)	828, 1085
BstC8I	GCNNGC	3 cut(s)	17, 89, 111
BstDEI	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
BstF5I	GGATG	2 cut(s)	172, 1186
BstFNI	CGCG	2 cut(s)	208, 962
BstHHI	GCGC	1 cut(s)	964
BstKTI	GATC	7 cut(s)	151, 277, 297, 556, 577, 919, 1035
BstMAI	GTCTC	3 cut(s)	76, 209, 656
BstMBI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 356
BstNI	CCWGG	2 cut(s)	333, 885
BstSCI	CCNGG	2 cut(s)	331, 883
BstSFI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
BstUI	CGCG	2 cut(s)	208, 962
BstV1I	GCAGC	4 cut(s)	346, 571, 729, 823
BstV2I	GAAGAC	2 cut(s)	525, 965
BstX2I	RGATCY	3 cut(s)	294, 553, 916
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	3 cut(s)	294, 553, 916
BsuRI	GGCC	3 cut(s)	5, 171, 684
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	2 cut(s)	172, 1186
BtsI	GCAGTG	1 cut(s)	508
BtsIMutI	CAGTG	2 cut(s)	508, 533
BveI	ACCTGC	1 cut(s)	784
Cac8I	GCNNGC	3 cut(s)	17, 89, 111
CfoI	GCGC	1 cut(s)	964
Cfr10I	RCCGGY	1 cut(s)	817
Cfr13I	GGNCC	4 cut(s)	169, 682, 748, 1062
CseI	GACGC	2 cut(s)	145, 991
CsiI	ACCWGGT	1 cut(s)	331
Csp6I	GTAC	5 cut(s)	204, 461, 603, 688, 923
CviAII	CATG	4 cut(s)	318, 509, 640, 1139
CviQI	GTAC	5 cut(s)	204, 461, 603, 688, 923
DdeI	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
DpnI	GATC	7 cut(s)	150, 276, 296, 555, 576, 918, 1034
DpnII	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
DrdI	GACNNNNNNGTC	1 cut(s)	29
DriI	GACNNNNNGTC	1 cut(s)	1001
DseDI	GACNNNNNNGTC	1 cut(s)	29
Eam1104I	CTCTTC	2 cut(s)	828, 1085
Eam1105I	GACNNNNNGTC	1 cut(s)	1001
EarI	CTCTTC	2 cut(s)	828, 1085
Ecl136II	GAGCTC	1 cut(s)	1078
Eco24I	GRGCYC	1 cut(s)	1080
Eco47I	GGWCC	2 cut(s)	748, 1062
Eco53kI	GAGCTC	1 cut(s)	1078
Eco57I	CTGAAG	4 cut(s)	10, 537, 654, 932
EcoICRI	GAGCTC	1 cut(s)	1078
EcoO109I	RGGNCCY	2 cut(s)	682, 748
EcoRI	GAATTC	1 cut(s)	849
EcoRII	CCWGG	2 cut(s)	331, 883
EcoT38I	GRGCYC	1 cut(s)	1080
FaeI	CATG	4 cut(s)	321, 512, 643, 1142
FalI	AAGNNNNNCTT	2 cut(s)	957, 989
FaqI	GGGAC	1 cut(s)	104
FatI	CATG	4 cut(s)	317, 508, 639, 1138
FauI	CCCGC	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	360, 560, 743, 812
FokI	GGATG	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	1080
Fsp4HI	GCNGC	4 cut(s)	360, 560, 743, 812
GlaI	GCGC	1 cut(s)	963
GluI	GCNGC	4 cut(s)	360, 560, 743, 812
GsuI	CTGGAG	1 cut(s)	867
HaeIII	GGCC	3 cut(s)	5, 171, 684
HapII	CCGG	2 cut(s)	199, 818
HgaI	GACGC	2 cut(s)	145, 991
HhaI	GCGC	1 cut(s)	964
Hin1II	CATG	4 cut(s)	321, 512, 643, 1142
Hin6I	GCGC	1 cut(s)	962
HinP1I	GCGC	1 cut(s)	962
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HindIII	AAGCTT	1 cut(s)	1048
HinfI	GANTC	4 cut(s)	30, 210, 1098, 1150
HpaII	CCGG	2 cut(s)	199, 818
HphI	GGTGA	2 cut(s)	730, 1136
Hpy166II	GTNNAC	3 cut(s)	403, 957, 995
Hpy188I	TCNGA	5 cut(s)	29, 259, 279, 912, 990
Hpy188III	TCNNGA	6 cut(s)	214, 367, 632, 659, 1084, 1095
Hpy8I	GTNNAC	3 cut(s)	403, 957, 995
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	7 cut(s)	187, 316, 430, 665, 892, 907, 1016
HpyCH4III	ACNGT	3 cut(s)	392, 407, 1176
HpyCH4IV	ACGT	1 cut(s)	522
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 356
HpyF3I	CTNAG	8 cut(s)	237, 291, 489, 528, 536, 616, 735, 1046
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	4 cut(s)	321, 512, 643, 1142
HspAI	GCGC	1 cut(s)	962
Kzo9I	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
LguI	GCTCTTC	2 cut(s)	828, 1085
LmnI	GCTCC	3 cut(s)	287, 634, 1119
Lsp1109I	GCAGC	4 cut(s)	346, 571, 729, 823
LweI	GCATC	2 cut(s)	404, 701
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	407, 503
MalI	GATC	7 cut(s)	150, 276, 296, 555, 576, 918, 1034
MboI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
MboII	GAAGA	6 cut(s)	530, 563, 815, 965, 1072, 1181
MflI	RGATCY	3 cut(s)	294, 553, 916
MhlI	GDGCHC	1 cut(s)	1080
MluCI	AATT	4 cut(s)	193, 829, 849, 1089
MlyI	GAGTC	2 cut(s)	39, 1159
MnlI	CCTC	8 cut(s)	124, 160, 238, 412, 605, 673, 761, 882
MspI	CCGG	2 cut(s)	199, 818
MspR9I	CCNGG	2 cut(s)	333, 885
Mva1269I	GAATGC	2 cut(s)	676, 984
MvaI	CCWGG	2 cut(s)	333, 885
MvnI	CGCG	2 cut(s)	208, 962
MwoI	GCNNNNNNNGC	2 cut(s)	130, 356
NdeII	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
NlaIII	CATG	4 cut(s)	321, 512, 643, 1142
NlaIV	GGNNCC	3 cut(s)	645, 918, 1115
NmeAIII	GCCGAG	1 cut(s)	209
NmuCI	GTSAC	1 cut(s)	503
PaqCI	CACCTGC	1 cut(s)	784
PciSI	GCTCTTC	2 cut(s)	828, 1085
PcsI	WCGNNNNNNNCGW	1 cut(s)	607
PctI	GAATGC	2 cut(s)	676, 984
PfeI	GAWTC	2 cut(s)	210, 1098
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	361, 561, 744, 813
PleI	GAGTC	2 cut(s)	38, 1158
PpsI	GAGTC	2 cut(s)	38, 1158
PpuMI	RGGWCCY	1 cut(s)	748
PsiI	TTATAA	1 cut(s)	1158
Psp124BI	GAGCTC	1 cut(s)	1080
Psp5II	RGGWCCY	1 cut(s)	748
Psp6I	CCWGG	2 cut(s)	331, 883
PspGI	CCWGG	2 cut(s)	331, 883
PspN4I	GGNNCC	3 cut(s)	645, 918, 1115
PspPI	GGNCC	4 cut(s)	169, 682, 748, 1062
PspPPI	RGGWCCY	1 cut(s)	748
PstI	CTGCAG	4 cut(s)	364, 561, 747, 781
PsuI	RGATCY	3 cut(s)	294, 553, 916
RsaI	GTAC	5 cut(s)	205, 462, 604, 689, 924
RsaNI	GTAC	5 cut(s)	204, 461, 603, 688, 923
SacI	GAGCTC	1 cut(s)	1080
SapI	GCTCTTC	2 cut(s)	828, 1085
SatI	GCNGC	4 cut(s)	360, 560, 743, 812
Sau3AI	GATC	7 cut(s)	148, 274, 294, 553, 574, 916, 1032
Sau96I	GGNCC	4 cut(s)	169, 682, 748, 1062
ScaI	AGTACT	1 cut(s)	924
SchI	GAGTC	2 cut(s)	39, 1159
ScrFI	CCNGG	2 cut(s)	333, 885
SduI	GDGCHC	1 cut(s)	1080
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	2 cut(s)	404, 701
SfcI	CTRYAG	5 cut(s)	360, 376, 557, 743, 777
SinI	GGWCC	2 cut(s)	748, 1062
SmlI	CTYRAG	1 cut(s)	1147
SmoI	CTYRAG	1 cut(s)	1147
Sse9I	AATT	4 cut(s)	193, 829, 849, 1089
SsiI	CCGC	2 cut(s)	122, 960
SstI	GAGCTC	1 cut(s)	1080
StyD4I	CCNGG	2 cut(s)	331, 883
TaaI	ACNGT	3 cut(s)	392, 407, 1176
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	6 cut(s)	21, 33, 165, 213, 1056, 1085
TaqII	GACCGA	1 cut(s)	332
TasI	AATT	4 cut(s)	193, 829, 849, 1089
TatI	WGTACW	2 cut(s)	460, 922
TfiI	GAWTC	2 cut(s)	210, 1098
TscAI	CASTG	2 cut(s)	508, 540
TseFI	GTSAC	1 cut(s)	503
TseI	GCWGC	4 cut(s)	359, 559, 742, 811
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	5 cut(s)	133, 842, 911, 945, 1038
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	2 cut(s)	508, 540
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	2 cut(s)	748, 1062
XapI	RAATTY	2 cut(s)	849, 1089
XmiI	GTMKAC	1 cut(s)	402
ZrmI	AGTACT	1 cut(s)	924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.