Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011735

Physical Location & Seq

Genomic Coordinates Forward (+)

8189840 .. 8192529

Gene Structure 2690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g13490.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGAGTTCCATGAAGACCGTTATATGCAGGCTCAGAGGCCAAAATATGATTGCCTTCTATTTGATCTAGATGATACCCTTTATCCCCTAAGTACTGGTGTTGCTACTGCTTGCCGCATCAACATAGAAGATTATATGGTTGAAAAGCTTGGCATTGAGAGGAGCATCATCCCTGAATTGGGTAACCTGCTGTACAAGAATTATGGAACTACAATGGCTGGACTTAGGGCAATTGGCTATGACTTTGACTATGATGAATACCACAGTTTTGTCCATGGGAGATTACCTTATGAGAACATAAAACCAGACCCTGTTTTGAGGAGTCTCTTGCTCAACCTGCCTTACAGGAAAATTATATTCACAAATGCAGACAAGGTCCATGCTGCTAAAGCATTAAGCAGGCTTGGATTAGAAGACTGTTTTGAGGGAATTCTCTGCTTTGAGACTCTCAACCCTATTCACAAAAGCACTGTTTCTGATGATGAAGATGACATTGAGTTTGTGGGATTAAGCACTGCTCAAGTCCCTCCCACAACAACTACTAGTAGCTCTGAGATTTTTGACATCATTGCCCATTTTGCTCAAGCAAACCCCTCTTCAAAATTACCCAAAACCCCAATTGTGTGCAAGCCATCAGAAGCTGCCATAGAAAAAGCCCTCAAGATAGCCAACATTAACCCTCAGAGAACACTGTTCTTTGAAGATAGTGTCAGGAACATACAAGCTGGCAAAAGAGTGGGTCTTCACACTGTGCTGGTTGGCACATCCCAGAGAGTTAAAGGTGCTGACTTTGCATTAGAAAGCATCCATAATCTGAGGGAGGCACTACCAGAGCTCTGGCAAGCTGATAGGAAATCTGAAGTTGGTTACCCTGGAAAAGTTGCAGTGGAAACTTCAGTCACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

303

Amino Acids

33.79

Weight (kDa)

5.34

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	203 - 270	9.9e-07	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	204 - 264	7.6e-06	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02230 AT5G02230 AT5G02230
fragaria_vesca	FvH4_6g13490 FvH4_6g13490
malus_domestica	MD04G1130800.v1.1 MD12G1143900.v1.1
prunus_persica	Prupe.6G257300_v2.0.a1 Prupe.6G257300_v2.0.a1 Prupe.6G257300_v2.0.a1
pyrus_communis	pycom12g13850
rosa_chinensis	RchiOBHm_Chr3g0466361
rosa_laevigata	RLG00000024581
rosa_multiflora	Rmu_sc0003480.1_g000006
rosa_roxburghii	Rroxscaffold_6G00414540
rosa_rugosa	Rorug03G0081300
rosa_samantha	Rh3AG127700 Rh3DG149700
rosa_wichuraiana	Rw3G012060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	195, 345
AciI	CCGC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	429
AcuI	CTGAAG	2 cut(s)	879, 879
AdeI	CACNNNGTG	1 cut(s)	751
AfaI	GTAC	2 cut(s)	94, 194
AfiI	CCNNNNNNNGG	2 cut(s)	178, 179
AgsI	TTSAA	3 cut(s)	143, 600, 701
AhlI	ACTAGT	1 cut(s)	542
AjnI	CCWGG	1 cut(s)	871
AluBI	AGCT	7 cut(s)	148, 549, 641, 725, 835, 845, 905
AluI	AGCT	7 cut(s)	148, 549, 641, 725, 835, 845, 905
Alw21I	GWGCWC	1 cut(s)	837
Alw26I	GTCTC	2 cut(s)	329, 437
AlwNI	CAGNNNCTG	2 cut(s)	311, 641
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	383, 641
ApoI	RAATTY	1 cut(s)	429
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	1 cut(s)	376
AvaII	GGWCC	1 cut(s)	376
BanII	GRGCYC	1 cut(s)	837
BbsI	GAAGAC	3 cut(s)	21, 420, 734
Bbv12I	GWGCWC	1 cut(s)	837
BbvI	GCAGC	2 cut(s)	370, 628
BccI	CCATC	1 cut(s)	640
BciT130I	CCWGG	1 cut(s)	873
BcoDI	GTCTC	2 cut(s)	329, 437
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	68, 543
BfuAI	ACCTGC	2 cut(s)	195, 345
BisI	GCNGC	3 cut(s)	115, 384, 642
BlsI	GCNGC	3 cut(s)	116, 385, 643
BmcAI	AGTACT	1 cut(s)	94
Bme1390I	CCNGG	1 cut(s)	873
Bme18I	GGWCC	1 cut(s)	376
BmgT120I	GGNCC	1 cut(s)	376
BmrFI	CCNGG	1 cut(s)	873
BmsI	GCATC	3 cut(s)	126, 174, 813
BpiI	GAAGAC	3 cut(s)	21, 420, 734
BpuEI	CTTGAG	3 cut(s)	504, 567, 644
BsaJI	CCNNGG	2 cut(s)	274, 871
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 179
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	567
BseBI	CCWGG	1 cut(s)	873
BseDI	CCNNGG	2 cut(s)	274, 871
BseGI	GGATG	3 cut(s)	168, 764, 804
BseLI	CCNNNNNNNGG	2 cut(s)	178, 179
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	4 cut(s)	47, 543, 695, 806
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	175, 334
BseXI	GCAGC	2 cut(s)	370, 628
BshFI	GGCC	1 cut(s)	40
BsiHKAI	GWGCWC	1 cut(s)	837
BslFI	GGGAC	1 cut(s)	509
BslI	CCNNNNNNNGG	2 cut(s)	178, 179
BsmAI	GTCTC	2 cut(s)	329, 437
BsmFI	GGGAC	1 cut(s)	509
BsnI	GGCC	1 cut(s)	40
Bsp1286I	GDGCHC	1 cut(s)	837
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	4 cut(s)	46, 544, 694, 807
BspMI	ACCTGC	2 cut(s)	195, 345
BsrDI	GCAATG	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	2 cut(s)	274, 871
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	873
Bst4CI	ACNGT	6 cut(s)	20, 266, 419, 472, 693, 751
Bst6I	CTCTTC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	6 cut(s)	30, 112, 401, 629, 727, 843
BstDEI	CTNAG	7 cut(s)	33, 89, 224, 552, 681, 815, 906
BstDSI	CCRYGG	1 cut(s)	274
BstEII	GGTNACC	2 cut(s)	182, 866
BstF5I	GGATG	3 cut(s)	168, 764, 804
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	329, 437
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	337, 389, 578, 791
BstNI	CCWGG	1 cut(s)	873
BstPI	GGTNACC	2 cut(s)	182, 866
BstSCI	CCNGG	1 cut(s)	871
BstV1I	GCAGC	2 cut(s)	370, 628
BstV2I	GAAGAC	3 cut(s)	21, 420, 734
BstXI	CCANNNNNNTGG	1 cut(s)	837
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	3 cut(s)	168, 764, 804
BtsI	GCAGTG	2 cut(s)	513, 891
BtsIMutI	CAGTG	5 cut(s)	468, 513, 689, 747, 891
BveI	ACCTGC	2 cut(s)	195, 345
Cac8I	GCNNGC	6 cut(s)	30, 112, 401, 629, 727, 843
CaiI	CAGNNNCTG	2 cut(s)	311, 641
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	93, 193
CviAII	CATG	3 cut(s)	11, 275, 380
CviQI	GTAC	2 cut(s)	93, 193
DdeI	CTNAG	7 cut(s)	33, 89, 224, 552, 681, 815, 906
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DraIII	CACNNNGTG	1 cut(s)	751
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	835
Eco130I	CCWWGG	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	837
Eco47I	GGWCC	1 cut(s)	376
Eco53kI	GAGCTC	1 cut(s)	835
Eco57I	CTGAAG	2 cut(s)	879, 879
Eco91I	GGTNACC	2 cut(s)	182, 866
EcoICRI	GAGCTC	1 cut(s)	835
EcoO65I	GGTNACC	2 cut(s)	182, 866
EcoRI	GAATTC	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	274
EcoT38I	GRGCYC	1 cut(s)	837
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	3 cut(s)	14, 278, 383
FaqI	GGGAC	1 cut(s)	509
FatI	CATG	3 cut(s)	10, 274, 379
Fnu4HI	GCNGC	3 cut(s)	115, 384, 642
FokI	GGATG	3 cut(s)	155, 751, 791
FriOI	GRGCYC	1 cut(s)	837
Fsp4HI	GCNGC	3 cut(s)	115, 384, 642
FspBI	CTAG	2 cut(s)	68, 543
GluI	GCNGC	3 cut(s)	115, 384, 642
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	3 cut(s)	14, 278, 383
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	322, 445
Hpy188I	TCNGA	7 cut(s)	36, 478, 553, 637, 684, 816, 859
Hpy188III	TCNNGA	3 cut(s)	68, 661, 712
HpyAV	CCTTC	1 cut(s)	65
HpyCH4III	ACNGT	6 cut(s)	20, 266, 419, 472, 693, 751
HpyCH4V	TGCA	5 cut(s)	28, 368, 627, 794, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	337, 389, 578, 791
HpyF3I	CTNAG	7 cut(s)	33, 89, 224, 552, 681, 815, 906
Hsp92II	CATG	3 cut(s)	14, 278, 383
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	2 cut(s)	370, 628
LweI	GCATC	3 cut(s)	126, 174, 813
MaeI	CTAG	2 cut(s)	68, 543
MaeIII	GTNAC	3 cut(s)	182, 866, 898
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	7 cut(s)	26, 140, 425, 497, 588, 713, 734
MfeI	CAATTG	2 cut(s)	231, 618
MhlI	GDGCHC	1 cut(s)	837
MluCI	AATT	7 cut(s)	176, 199, 231, 351, 429, 602, 618
MlyI	GAGTC	2 cut(s)	331, 439
MseI	TTAA	4 cut(s)	395, 509, 675, 777
MspR9I	CCNGG	1 cut(s)	873
MunI	CAATTG	2 cut(s)	231, 618
MvaI	CCWGG	1 cut(s)	873
MwoI	GCNNNNNNNGC	4 cut(s)	337, 389, 578, 791
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	14, 278, 383
NmuCI	GTSAC	1 cut(s)	898
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	116, 385, 643
PleI	GAGTC	2 cut(s)	330, 439
PpsI	GAGTC	2 cut(s)	330, 439
Psp124BI	GAGCTC	1 cut(s)	837
Psp6I	CCWGG	1 cut(s)	871
PspEI	GGTNACC	2 cut(s)	182, 866
PspGI	CCWGG	1 cut(s)	871
PspPI	GGNCC	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	311, 641
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	2 cut(s)	94, 194
RsaNI	GTAC	2 cut(s)	93, 193
SacI	GAGCTC	1 cut(s)	837
SaqAI	TTAA	4 cut(s)	395, 509, 675, 777
SatI	GCNGC	3 cut(s)	115, 384, 642
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	376
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	2 cut(s)	331, 439
ScrFI	CCNGG	1 cut(s)	873
SduI	GDGCHC	1 cut(s)	837
SfaNI	GCATC	3 cut(s)	126, 174, 813
SinI	GGWCC	1 cut(s)	376
SmlI	CTYRAG	3 cut(s)	519, 582, 659
SmoI	CTYRAG	3 cut(s)	519, 582, 659
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	7 cut(s)	176, 199, 231, 351, 429, 602, 618
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	68, 543
SstI	GAGCTC	1 cut(s)	837
StyD4I	CCNGG	1 cut(s)	871
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	6 cut(s)	20, 266, 419, 472, 693, 751
TasI	AATT	7 cut(s)	176, 199, 231, 351, 429, 602, 618
TatI	WGTACW	2 cut(s)	92, 192
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	4 cut(s)	395, 509, 675, 777
Tru9I	TTAA	4 cut(s)	395, 509, 675, 777
TscAI	CASTG	5 cut(s)	475, 520, 696, 754, 891
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	2 cut(s)	383, 641
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	3 cut(s)	27, 270, 498
TspRI	CASTG	5 cut(s)	475, 520, 696, 754, 891
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	429
XbaI	TCTAGA	1 cut(s)	67
XspI	CTAG	2 cut(s)	68, 543
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.