Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011735

Physical Location & Seq

Genomic Coordinates Forward (+)

11030750 .. 11033871

Gene Structure 3122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG127700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAGTTCCATGAAGACCGTTACAGGCAGGCTCAGAGGCCAAAATATGATTGTCTTCTATTTGATCTAGATGATACCCTTTATCCCCTAAGTACTGGTGTTGCTACTGCTTGCCGCAATAACATAGAAGATTATATGGTTGAAAAGCTTGGCATTGAGAGGAGCATCATCCCTGAATTGGGTAACCTGCTGTACAAGAATTATGGAACTACAATGGCTGGACTTAGGGCAATTGGCTATGACTTTGACTATGATGAATACCACAGTTTTGTCCATGGTAGATTACCTTATGAGAACATAAAACCAGACCCTGTTTTGAGGAGTCTTTTGCTCAACCTGCCTTACAGGAAAATTATATTCACAAATGCAGACAAGGTCCATGCTGCTAAAGCACTAAGCAGGCTTGGTTTAGAAGATTGCTTTGAGGGAATTATCTGCTTTGAGACCCTCAACCCTATTCACAAAAGCACTGTTTCTGATGATGAAGATGACATTGAGTTTGTGGGATTAAGCACTGCTCAAATTCCTGCCACAACAACTACTAGTAGCTCTGAGATTTTTGACATCATTGCCCATTTTGCTCAAGCAAACCCCTCTTCAAAATTACCCAAAACCCCAATTGTGTGCAAGCCATCAGAAGCTGCCATAGAAAAAGCCCTCGAGATTGCCCACATTAACCCTCAGAGAACAGTAAGTTCTATATTTCTCTCTCATGGTTTTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00760 map00760

Pfam Domains

Protein Families

HAD_2 Hydrolase_like

Protein Analysis

241

Amino Acids

27.12

Weight (kDa)

5.16

Isoelectric Point (pI)

46.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011735)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02230 AT5G02230 AT5G02230
fragaria_vesca	FvH4_6g13490 FvH4_6g13490
malus_domestica	MD04G1130800.v1.1 MD12G1143900.v1.1
prunus_persica	Prupe.6G257300_v2.0.a1 Prupe.6G257300_v2.0.a1 Prupe.6G257300_v2.0.a1
pyrus_communis	pycom12g13850
rosa_chinensis	RchiOBHm_Chr3g0466361
rosa_laevigata	RLG00000024581
rosa_multiflora	Rmu_sc0003480.1_g000006
rosa_roxburghii	Rroxscaffold_6G00414540
rosa_rugosa	Rorug03G0081300
rosa_samantha	Rh3AG127700 Rh3DG149700
rosa_wichuraiana	Rw3G012060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	195, 345
AciI	CCGC	1 cut(s)	115
AcsI	RAATTY	1 cut(s)	522
AfaI	GTAC	2 cut(s)	94, 194
AfiI	CCNNNNNNNGG	2 cut(s)	178, 179
AgsI	TTSAA	2 cut(s)	143, 600
AhlI	ACTAGT	1 cut(s)	542
AluBI	AGCT	3 cut(s)	148, 549, 641
AluI	AGCT	3 cut(s)	148, 549, 641
Alw26I	GTCTC	1 cut(s)	437
AlwNI	CAGNNNCTG	2 cut(s)	311, 641
Ama87I	CYCGRG	1 cut(s)	659
AoxI	GGCC	1 cut(s)	38
ApeKI	GCWGC	2 cut(s)	383, 641
ApoI	RAATTY	1 cut(s)	522
ArsI	GACNNNNNNTTYG	2 cut(s)	482, 514
AspS9I	GGNCC	1 cut(s)	376
AvaI	CYCGRG	1 cut(s)	659
AvaII	GGWCC	1 cut(s)	376
BbsI	GAAGAC	2 cut(s)	21, 47
BbvI	GCAGC	2 cut(s)	370, 628
BccI	CCATC	1 cut(s)	640
BcoDI	GTCTC	1 cut(s)	437
BcuI	ACTAGT	1 cut(s)	542
BfaI	CTAG	2 cut(s)	68, 543
BfuAI	ACCTGC	2 cut(s)	195, 345
BisI	GCNGC	3 cut(s)	115, 384, 642
BlsI	GCNGC	3 cut(s)	116, 385, 643
BmcAI	AGTACT	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	376
BmeT110I	CYCGRG	1 cut(s)	659
BmgT120I	GGNCC	1 cut(s)	376
BmsI	GCATC	1 cut(s)	174
BpiI	GAAGAC	2 cut(s)	21, 47
BpuEI	CTTGAG	1 cut(s)	567
BsaI	GGTCTC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 179
Bse1I	ACTGG	1 cut(s)	100
Bse3DI	GCAATG	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	274
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	2 cut(s)	178, 179
BseMI	GCAATG	1 cut(s)	567
BseMII	CTCAG	3 cut(s)	47, 543, 695
BseNI	ACTGG	1 cut(s)	100
BseRI	GAGGAG	2 cut(s)	175, 334
BseXI	GCAGC	2 cut(s)	370, 628
BshFI	GGCC	1 cut(s)	40
BsiHKCI	CYCGRG	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	178, 179
BsmAI	GTCTC	1 cut(s)	437
BsnI	GGCC	1 cut(s)	40
Bso31I	GGTCTC	1 cut(s)	437
BsoBI	CYCGRG	1 cut(s)	659
Bsp1407I	TGTACA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	274
BspACI	CCGC	1 cut(s)	115
BspANI	GGCC	1 cut(s)	40
BspCNI	CTCAG	3 cut(s)	46, 544, 694
BspMI	ACCTGC	2 cut(s)	195, 345
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	567
BsrGI	TGTACA	1 cut(s)	192
BsrI	ACTGG	1 cut(s)	100
BssECI	CCNNGG	1 cut(s)	274
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	274
Bst4CI	ACNGT	4 cut(s)	20, 266, 472, 691
Bst6I	CTCTTC	1 cut(s)	601
BstAUI	TGTACA	1 cut(s)	192
BstC8I	GCNNGC	4 cut(s)	30, 112, 401, 629
BstDEI	CTNAG	6 cut(s)	33, 89, 224, 395, 552, 681
BstDSI	CCRYGG	1 cut(s)	274
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	437
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	337, 389, 578
BstPI	GGTNACC	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	370, 628
BstV2I	GAAGAC	2 cut(s)	21, 47
BsuRI	GGCC	1 cut(s)	40
BtgI	CCRYGG	1 cut(s)	274
BtsCI	GGATG	1 cut(s)	168
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	468, 513
BveI	ACCTGC	2 cut(s)	195, 345
Cac8I	GCNNGC	4 cut(s)	30, 112, 401, 629
CaiI	CAGNNNCTG	2 cut(s)	311, 641
Cfr13I	GGNCC	1 cut(s)	376
Csp6I	GTAC	2 cut(s)	93, 193
CviAII	CATG	4 cut(s)	11, 275, 380, 713
CviQI	GTAC	2 cut(s)	93, 193
DdeI	CTNAG	6 cut(s)	33, 89, 224, 395, 552, 681
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Eco130I	CCWWGG	1 cut(s)	274
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	376
Eco88I	CYCGRG	1 cut(s)	659
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	274
ErhI	CCWWGG	1 cut(s)	274
FaeI	CATG	4 cut(s)	14, 278, 383, 716
FatI	CATG	4 cut(s)	10, 274, 379, 712
Fnu4HI	GCNGC	3 cut(s)	115, 384, 642
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	115, 384, 642
FspBI	CTAG	2 cut(s)	68, 543
GluI	GCNGC	3 cut(s)	115, 384, 642
HaeIII	GGCC	1 cut(s)	40
Hin1II	CATG	4 cut(s)	14, 278, 383, 716
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	322
Hpy188I	TCNGA	5 cut(s)	36, 478, 553, 637, 684
Hpy188III	TCNNGA	2 cut(s)	68, 661
HpyCH4III	ACNGT	4 cut(s)	20, 266, 472, 691
HpyCH4V	TGCA	2 cut(s)	368, 627
HpyF10VI	GCNNNNNNNGC	3 cut(s)	337, 389, 578
HpyF3I	CTNAG	6 cut(s)	33, 89, 224, 395, 552, 681
Hsp92II	CATG	4 cut(s)	14, 278, 383, 716
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	162
Lsp1109I	GCAGC	2 cut(s)	370, 628
LweI	GCATC	1 cut(s)	174
MaeI	CTAG	2 cut(s)	68, 543
MaeIII	GTNAC	2 cut(s)	20, 182
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	6 cut(s)	26, 47, 140, 425, 497, 588
MfeI	CAATTG	2 cut(s)	231, 618
MluCI	AATT	8 cut(s)	176, 199, 231, 351, 429, 522, 602, 618
MlyI	GAGTC	1 cut(s)	331
MnlI	CCTC	8 cut(s)	30, 153, 312, 418, 458, 604, 668, 690
MseI	TTAA	2 cut(s)	509, 675
MunI	CAATTG	2 cut(s)	231, 618
MwoI	GCNNNNNNNGC	3 cut(s)	337, 389, 578
NcoI	CCATGG	1 cut(s)	274
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	4 cut(s)	14, 278, 383, 716
PaeR7I	CTCGAG	1 cut(s)	659
PflFI	GACNNNGTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	116, 385, 643
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
PspEI	GGTNACC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	376
PstNI	CAGNNNCTG	2 cut(s)	311, 641
PsyI	GACNNNGTC	1 cut(s)	374
RsaI	GTAC	2 cut(s)	94, 194
RsaNI	GTAC	2 cut(s)	93, 193
SaqAI	TTAA	2 cut(s)	509, 675
SatI	GCNGC	3 cut(s)	115, 384, 642
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	1 cut(s)	376
ScaI	AGTACT	1 cut(s)	94
SchI	GAGTC	1 cut(s)	331
SetI	ASST	7 cut(s)	150, 189, 289, 339, 378, 551, 643
SfaNI	GCATC	1 cut(s)	174
Sfr274I	CTCGAG	1 cut(s)	659
SinI	GGWCC	1 cut(s)	376
SlaI	CTCGAG	1 cut(s)	659
SmlI	CTYRAG	2 cut(s)	582, 659
SmoI	CTYRAG	2 cut(s)	582, 659
SpeI	ACTAGT	1 cut(s)	542
Sse9I	AATT	8 cut(s)	176, 199, 231, 351, 429, 522, 602, 618
SsiI	CCGC	1 cut(s)	115
SspMI	CTAG	2 cut(s)	68, 543
StyI	CCWWGG	1 cut(s)	274
TaaI	ACNGT	4 cut(s)	20, 266, 472, 691
TaqI	TCGA	1 cut(s)	660
TasI	AATT	8 cut(s)	176, 199, 231, 351, 429, 522, 602, 618
TatI	WGTACW	2 cut(s)	92, 192
TauI	GCSGC	1 cut(s)	117
Tru1I	TTAA	2 cut(s)	509, 675
Tru9I	TTAA	2 cut(s)	509, 675
TscAI	CASTG	2 cut(s)	475, 520
TseI	GCWGC	2 cut(s)	383, 641
TspDTI	ATGAA	3 cut(s)	27, 270, 498
TspRI	CASTG	2 cut(s)	475, 520
Tth111I	GACNNNGTC	1 cut(s)	374
VpaK11BI	GGWCC	1 cut(s)	376
XapI	RAATTY	1 cut(s)	522
XbaI	TCTAGA	1 cut(s)	67
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	2 cut(s)	68, 543
ZrmI	AGTACT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.