Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017327

Physical Location & Seq

Genomic Coordinates Reverse (-)

9556308 .. 9557198

Gene Structure 891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g15370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCCAAGAAGGTATCAAAGAAGCTTAAATTCAACCGGAAGATACAAAAGATATCTCCAGACATAGATTTGTGGTTGTCCAAAAATGCTGATGTCCCAAAGGAATTGAAGACGGTGATCATGGAAACTGTACGATATAGAGTGGAAGAGAACCAAGATGTTCATGTGGAAAATATCGTCTCTATTCTCTCCCCAGTTCAAAAAAGACTTGTCATGTGCCCTCTTTGCCTGGATTTGCTTAAAAATGTGTCACTGCTTGAAGAAATAGGCGATCAAGTGTTGAAAGCAATCTCCGAGCATCTCAACTGGGAGTTCTATGCTGTAGACAGCTATATTATTCGAGAGGGGGAACCACTCAGGAAGATGTTCTTCATCAGGCAAGGCACCGCACTGACCTACACAACTCGTACAGATCAGATGAGTGGAGGAAGTACAAGTGGTTCTTCGATCATTGACAACCTTGAGAAGGGTGATCTCTATGGGGAAGAACTTCTAGAGTGGGCATTCAATTTTGGCTCCTTTTCGAACTTGCTTGTTTCAACGATAAGTGTTGTGTCTCAAGAAATAGTTGAAGCTTTTGTCATCAGGGCCAAAGATTTGAAGAAAATTGTCTCTACGTTCTGGTGGCAGTTTAGCAGGAAACTCCAACTCAATGACATGGAGGATTCTCAGTTGATGCAGTTGAAGTTTTTGGCAATTTCTTCCTTGTTACGCCACCGTAAAGCAATGGCAAAGAGAGGAAGTGGCTGGGACCAAGTTTACAATAAGTTAATCAAAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

262

Amino Acids

30.07

Weight (kDa)

8.89

Isoelectric Point (pI)

35.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
cNMP_binding	PF00027	106 - 205	8.8e-06	Cyclic nucleotide-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0017327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15370 FvH4_6g15371
rosa_chinensis	RchiOBHm_Chr3g0468811 RchiOBHm_Chr3g0468821
rosa_laevigata	RLG00000024407
rosa_multiflora	Rmu_sc0001639.1_g000023
rosa_roxburghii	Rroxscaffold_6G00412530
rosa_rugosa	Rorug03G0096700
rosa_samantha	Rh3AG146400 Rh3AG146500 Rh3BG169000
rosa_wichuraiana	Rw3G013770 Rw3G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	383
AccI	GTMKAC	1 cut(s)	324
AciI	CCGC	1 cut(s)	387
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	29
AfaI	GTAC	3 cut(s)	132, 409, 433
AfiI	CCNNNNNNNGG	1 cut(s)	466
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	3 cut(s)	25, 330, 575
AluI	AGCT	3 cut(s)	25, 330, 575
Alw26I	GTCTC	3 cut(s)	184, 561, 616
AoxI	GGCC	2 cut(s)	3, 588
ApoI	RAATTY	1 cut(s)	29
Asp700I	GAANNNNTTC	2 cut(s)	365, 489
AspS9I	GGNCC	2 cut(s)	588, 751
AsuHPI	GGTGA	2 cut(s)	127, 482
AsuII	TTCGAA	1 cut(s)	524
AvaII	GGWCC	1 cut(s)	751
BaeGI	GKGCMC	1 cut(s)	221
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	383
BbsI	GAAGAC	1 cut(s)	116
BciT130I	CCWGG	1 cut(s)	230
BclI	TGATCA	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	184, 561, 616
BfaI	CTAG	1 cut(s)	494
BfmI	CTRYAG	1 cut(s)	321
Bme1390I	CCNGG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	588, 751
BmiI	GGNNCC	4 cut(s)	351, 385, 517, 752
BmrFI	CCNGG	1 cut(s)	230
BmrI	ACTGGG	2 cut(s)	188, 316
BmsI	GCATC	2 cut(s)	307, 666
BmuI	ACTGGG	2 cut(s)	188, 316
BpiI	GAAGAC	1 cut(s)	116
BpmI	CTGGAG	1 cut(s)	42
Bpu14I	TTCGAA	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	482, 543
BsaWI	WCCGGW	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	1 cut(s)	466
Bse1I	ACTGG	2 cut(s)	194, 311
Bse3DI	GCAATG	1 cut(s)	732
BseBI	CCWGG	1 cut(s)	230
BseLI	CCNNNNNNNGG	1 cut(s)	466
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	370, 683
BseNI	ACTGG	2 cut(s)	194, 311
BseSI	GKGCMC	1 cut(s)	221
BseYI	CCCAGC	1 cut(s)	747
BshFI	GGCC	2 cut(s)	5, 590
BshNI	GGYRCC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	37
BslFI	GGGAC	2 cut(s)	80, 764
BslI	CCNNNNNNNGG	1 cut(s)	466
BsmAI	GTCTC	3 cut(s)	184, 561, 616
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	2 cut(s)	80, 764
BsmI	GAATGC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	5, 590
Bsp119I	TTCGAA	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	5 cut(s)	117, 271, 412, 447, 472
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	2 cut(s)	5, 590
BspCNI	CTCAG	2 cut(s)	369, 682
BspLI	GGNNCC	4 cut(s)	351, 385, 517, 752
BspT104I	TTCGAA	1 cut(s)	524
BspT107I	GGYRCC	1 cut(s)	383
BsrDI	GCAATG	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	194, 311
BssMI	GATC	5 cut(s)	117, 271, 412, 447, 472
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	3 cut(s)	115, 130, 719
Bst6I	CTCTTC	1 cut(s)	141
BstBI	TTCGAA	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	356, 669
BstENI	CCTNNNNNAGG	1 cut(s)	464
BstKTI	GATC	5 cut(s)	120, 274, 415, 450, 475
BstMAI	GTCTC	3 cut(s)	184, 561, 616
BstMBI	GATC	5 cut(s)	117, 271, 412, 447, 472
BstMWI	GCNNNNNNNGC	1 cut(s)	225
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	228
BstSFI	CTRYAG	1 cut(s)	321
BstSLI	GKGCMC	1 cut(s)	221
BstV2I	GAAGAC	1 cut(s)	116
BsuRI	GGCC	2 cut(s)	5, 590
BtsI	GCAGTG	1 cut(s)	251
BtsIMutI	CAGTG	2 cut(s)	251, 389
Cfr13I	GGNCC	2 cut(s)	588, 751
Csp6I	GTAC	3 cut(s)	131, 408, 432
CviAII	CATG	4 cut(s)	121, 164, 214, 658
CviJI	RGCY	7 cut(s)	5, 25, 330, 516, 575, 590, 747
CviKI_1	RGCY	7 cut(s)	5, 25, 330, 516, 575, 590, 747
CviQI	GTAC	3 cut(s)	131, 408, 432
DdeI	CTNAG	2 cut(s)	356, 669
DpnI	GATC	5 cut(s)	119, 273, 414, 449, 474
DpnII	GATC	5 cut(s)	117, 271, 412, 447, 472
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	141
EarI	CTCTTC	1 cut(s)	141
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	1 cut(s)	751
EcoNI	CCTNNNNNAGG	1 cut(s)	464
EcoRII	CCWGG	1 cut(s)	228
EcoRV	GATATC	1 cut(s)	54
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	4 cut(s)	124, 167, 217, 661
FaiI	YATR	9 cut(s)	65, 122, 138, 165, 215, 318, 333, 480, 659
FalI	AAGNNNNNCTT	4 cut(s)	353, 385, 427, 459
FaqI	GGGAC	2 cut(s)	80, 764
FatI	CATG	4 cut(s)	120, 163, 213, 657
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	324
FspBI	CTAG	1 cut(s)	494
GsaI	CCCAGC	1 cut(s)	751
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	2 cut(s)	5, 590
HapII	CCGG	1 cut(s)	37
Hin1II	CATG	4 cut(s)	124, 167, 217, 661
HindIII	AAGCTT	2 cut(s)	23, 573
HinfI	GANTC	1 cut(s)	665
HpaII	CCGG	1 cut(s)	37
HphI	GGTGA	2 cut(s)	127, 482
Hpy166II	GTNNAC	2 cut(s)	325, 760
Hpy188I	TCNGA	2 cut(s)	295, 417
Hpy188III	TCNNGA	5 cut(s)	59, 341, 358, 494, 560
Hpy8I	GTNNAC	2 cut(s)	325, 760
HpyAV	CCTTC	2 cut(s)	4, 460
HpyCH4III	ACNGT	3 cut(s)	115, 130, 719
HpyCH4IV	ACGT	1 cut(s)	617
HpyCH4V	TGCA	1 cut(s)	679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	225
HpyF3I	CTNAG	2 cut(s)	356, 669
HpySE526I	ACGT	1 cut(s)	617
Hsp92II	CATG	4 cut(s)	124, 167, 217, 661
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	5 cut(s)	117, 271, 412, 447, 472
LmnI	GCTCC	1 cut(s)	521
LweI	GCATC	2 cut(s)	307, 666
MaeI	CTAG	1 cut(s)	494
MaeII	ACGT	1 cut(s)	617
MaeIII	GTNAC	3 cut(s)	249, 708, 779
MalI	GATC	5 cut(s)	119, 273, 414, 449, 474
MboI	GATC	5 cut(s)	117, 271, 412, 447, 472
MhlI	GDGCHC	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	29, 104, 508, 606, 696
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	1 cut(s)	670
MnlI	CCTC	5 cut(s)	231, 337, 419, 655, 731
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	2 cut(s)	365, 489
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	27, 240, 770
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	37
MspR9I	CCNGG	1 cut(s)	230
Mva1269I	GAATGC	1 cut(s)	503
MvaI	CCWGG	1 cut(s)	230
MwoI	GCNNNNNNNGC	1 cut(s)	225
NdeII	GATC	5 cut(s)	117, 271, 412, 447, 472
NlaIII	CATG	4 cut(s)	124, 167, 217, 661
NlaIV	GGNNCC	4 cut(s)	351, 385, 517, 752
NmuCI	GTSAC	2 cut(s)	249, 779
NspV	TTCGAA	1 cut(s)	524
PctI	GAATGC	1 cut(s)	503
PdmI	GAANNNNTTC	2 cut(s)	365, 489
PfeI	GAWTC	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	228
PspFI	CCCAGC	1 cut(s)	747
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	4 cut(s)	351, 385, 517, 752
PspPI	GGNCC	2 cut(s)	588, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
RsaI	GTAC	3 cut(s)	132, 409, 433
RsaNI	GTAC	3 cut(s)	131, 408, 432
SaqAI	TTAA	3 cut(s)	27, 240, 770
Sau3AI	GATC	5 cut(s)	117, 271, 412, 447, 472
Sau96I	GGNCC	2 cut(s)	588, 751
ScrFI	CCNGG	1 cut(s)	230
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	7 cut(s)	15, 27, 332, 398, 462, 577, 620
SfaNI	GCATC	2 cut(s)	307, 666
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	1 cut(s)	524
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	2 cut(s)	461, 558
SmoI	CTYRAG	2 cut(s)	461, 558
Sse9I	AATT	5 cut(s)	29, 104, 508, 606, 696
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	1 cut(s)	494
StyD4I	CCNGG	1 cut(s)	228
TaaI	ACNGT	3 cut(s)	115, 130, 719
TaiI	ACGT	1 cut(s)	620
TaqI	TCGA	3 cut(s)	340, 446, 524
TasI	AATT	5 cut(s)	29, 104, 508, 606, 696
TatI	WGTACW	1 cut(s)	431
TfiI	GAWTC	1 cut(s)	665
Tru1I	TTAA	3 cut(s)	27, 240, 770
Tru9I	TTAA	3 cut(s)	27, 240, 770
TscAI	CASTG	2 cut(s)	258, 396
TseFI	GTSAC	2 cut(s)	249, 779
Tsp45I	GTSAC	2 cut(s)	249, 779
TspDTI	ATGAA	2 cut(s)	152, 361
TspRI	CASTG	2 cut(s)	258, 396
VpaK11BI	GGWCC	1 cut(s)	751
XagI	CCTNNNNNAGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	29
XbaI	TCTAGA	1 cut(s)	493
XmiI	GTMKAC	1 cut(s)	324
XmnI	GAANNNNTTC	2 cut(s)	365, 489
XspI	CTAG	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.