Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0017327

Physical Location & Seq

Genomic Coordinates Reverse (-)

12925237 .. 12925758

Gene Structure 522 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG146400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGACGTACAAGTGTTGAAAGCGATCTCCGAGCATCTTAACTGGGTGTTCTATGCCGTAGAAAGCTATATTATTCGAGAGGGGGAACCACTCGGAAAGATGTTCTTCATCAGGCAAGGCACCGCGTGGACCTACGCAACTCGTACTGATCACATCAGTGGTGGAAGTACAAGTGGCTCTTCGATCATAGACAACCTTGAGAAAGATGATCTCTATGGGGCAGAACTGCTAGAGTGGGCATTCAGTTTTGGCTCCTTTTCGAACTTGCCAATTTCAACAAGAACTGTTGTGTCCCAAGAAAGAGTTGAAGCTTTTGTTATCAGGGCCAAAGATTTGAAGAAAATTGTCTCTATGTTCTGGTGGCAGTTTAGCAGGAAACTCCAACTCCATGATATAGAGGATTCTCTGTTGAGGCAGTTGAAGTATCTGGCAATTTCTTCCTTGTTACGCCACCGTAAGGCAATGGCAAAGAGAGGAACTGGCTGGGACAAAGTTTACAGCAAATTAATCAAAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

173

Amino Acids

19.96

Weight (kDa)

9.27

Isoelectric Point (pI)

31.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15370 FvH4_6g15371
rosa_chinensis	RchiOBHm_Chr3g0468811 RchiOBHm_Chr3g0468821
rosa_laevigata	RLG00000024407
rosa_multiflora	Rmu_sc0001639.1_g000023
rosa_roxburghii	Rroxscaffold_6G00412530
rosa_rugosa	Rorug03G0096700
rosa_samantha	Rh3AG146400 Rh3AG146500 Rh3BG169000
rosa_wichuraiana	Rw3G013770 Rw3G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	119
AccII	CGCG	1 cut(s)	125
AciI	CCGC	1 cut(s)	123
AdeI	CACNNNGTG	1 cut(s)	126
AfaI	GTAC	3 cut(s)	9, 145, 169
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	5 cut(s)	19, 276, 308, 337, 421
AleI	CACNNNNGTG	1 cut(s)	156
AluBI	AGCT	2 cut(s)	66, 311
AluI	AGCT	2 cut(s)	66, 311
Alw26I	GTCTC	1 cut(s)	352
AoxI	GGCC	1 cut(s)	324
AseI	ATTAAT	1 cut(s)	506
AspS9I	GGNCC	2 cut(s)	129, 324
AsuII	TTCGAA	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	129
BanI	GGYRCC	1 cut(s)	119
BceAI	ACGGC	1 cut(s)	41
BclI	TGATCA	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	352
BfaI	CTAG	1 cut(s)	230
Bme18I	GGWCC	1 cut(s)	129
BmgT120I	GGNCC	2 cut(s)	129, 324
BmiI	GGNNCC	3 cut(s)	87, 121, 253
BmrI	ACTGGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	43
BmuI	ACTGGG	1 cut(s)	52
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	218
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	47, 484
Bse3DI	GCAATG	1 cut(s)	468
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseMI	GCAATG	1 cut(s)	468
BseNI	ACTGG	2 cut(s)	47, 484
BseYI	CCCAGC	1 cut(s)	483
Bsh1236I	CGCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	326
BshNI	GGYRCC	1 cut(s)	119
BslFI	GGGAC	2 cut(s)	277, 500
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	352
BsmFI	GGGAC	2 cut(s)	277, 500
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	1 cut(s)	326
Bsp119I	TTCGAA	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	24, 148, 183, 208
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	326
BspFNI	CGCG	1 cut(s)	125
BspLI	GGNNCC	3 cut(s)	87, 121, 253
BspQI	GCTCTTC	1 cut(s)	184
BspT104I	TTCGAA	1 cut(s)	260
BspT107I	GGYRCC	1 cut(s)	119
BsrDI	GCAATG	1 cut(s)	468
BsrI	ACTGG	2 cut(s)	47, 484
BssMI	GATC	4 cut(s)	24, 148, 183, 208
Bst4CI	ACNGT	2 cut(s)	286, 455
Bst6I	CTCTTC	1 cut(s)	184
BstBI	TTCGAA	1 cut(s)	260
BstFNI	CGCG	1 cut(s)	125
BstKTI	GATC	4 cut(s)	27, 151, 186, 211
BstMAI	GTCTC	1 cut(s)	352
BstMBI	GATC	4 cut(s)	24, 148, 183, 208
BstUI	CGCG	1 cut(s)	125
BsuRI	GGCC	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	163
Cfr13I	GGNCC	2 cut(s)	129, 324
Csp6I	GTAC	3 cut(s)	8, 144, 168
CviAII	CATG	1 cut(s)	389
CviJI	RGCY	6 cut(s)	66, 177, 252, 311, 326, 483
CviKI_1	RGCY	6 cut(s)	66, 177, 252, 311, 326, 483
CviQI	GTAC	3 cut(s)	8, 144, 168
DpnI	GATC	4 cut(s)	26, 150, 185, 210
DpnII	GATC	4 cut(s)	24, 148, 183, 208
DraIII	CACNNNGTG	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco47I	GGWCC	1 cut(s)	129
FaeI	CATG	1 cut(s)	392
FaiI	YATR	7 cut(s)	54, 69, 188, 216, 353, 390, 395
FalI	AAGNNNNNCTT	4 cut(s)	89, 121, 163, 195
FaqI	GGGAC	2 cut(s)	277, 500
FatI	CATG	1 cut(s)	388
FbaI	TGATCA	1 cut(s)	148
FspBI	CTAG	1 cut(s)	230
GsaI	CCCAGC	1 cut(s)	487
HaeIII	GGCC	1 cut(s)	326
Hin1II	CATG	1 cut(s)	392
HindIII	AAGCTT	1 cut(s)	309
HinfI	GANTC	1 cut(s)	401
Hpy166II	GTNNAC	2 cut(s)	129, 496
Hpy188I	TCNGA	2 cut(s)	31, 95
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	2 cut(s)	129, 496
HpyCH4III	ACNGT	2 cut(s)	286, 455
HpyCH4IV	ACGT	1 cut(s)	6
HpySE526I	ACGT	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	392
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	24, 148, 183, 208
LguI	GCTCTTC	1 cut(s)	184
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	8 cut(s)	28, 97, 307, 343, 358, 413, 465, 469
LweI	GCATC	1 cut(s)	43
MaeI	CTAG	1 cut(s)	230
MaeII	ACGT	1 cut(s)	6
MaeIII	GTNAC	2 cut(s)	444, 515
MalI	GATC	4 cut(s)	26, 150, 185, 210
MboI	GATC	4 cut(s)	24, 148, 183, 208
MboII	GAAGA	4 cut(s)	97, 171, 349, 429
MluCI	AATT	4 cut(s)	270, 342, 432, 503
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	4 cut(s)	73, 391, 405, 467
MseI	TTAA	2 cut(s)	39, 506
MslI	CAYNNNNRTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	239
MvnI	CGCG	1 cut(s)	125
NdeII	GATC	4 cut(s)	24, 148, 183, 208
NlaIII	CATG	1 cut(s)	392
NlaIV	GGNNCC	3 cut(s)	87, 121, 253
NmuCI	GTSAC	1 cut(s)	515
NspV	TTCGAA	1 cut(s)	260
OliI	CACNNNNGTG	1 cut(s)	156
PciSI	GCTCTTC	1 cut(s)	184
PctI	GAATGC	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	401
PshBI	ATTAAT	1 cut(s)	506
PspFI	CCCAGC	1 cut(s)	483
PspN4I	GGNNCC	3 cut(s)	87, 121, 253
PspPI	GGNCC	2 cut(s)	129, 324
RsaI	GTAC	3 cut(s)	9, 145, 169
RsaNI	GTAC	3 cut(s)	8, 144, 168
RseI	CAYNNNNRTG	1 cut(s)	156
SapI	GCTCTTC	1 cut(s)	184
SaqAI	TTAA	2 cut(s)	39, 506
Sau3AI	GATC	4 cut(s)	24, 148, 183, 208
Sau96I	GGNCC	2 cut(s)	129, 324
SetI	ASST	5 cut(s)	9, 68, 134, 198, 313
SfaNI	GCATC	1 cut(s)	43
SfuI	TTCGAA	1 cut(s)	260
SinI	GGWCC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	156
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	4 cut(s)	270, 342, 432, 503
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	1 cut(s)	230
TaaI	ACNGT	2 cut(s)	286, 455
TaiI	ACGT	1 cut(s)	9
TaqI	TCGA	3 cut(s)	76, 182, 260
TasI	AATT	4 cut(s)	270, 342, 432, 503
TatI	WGTACW	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	401
Tru1I	TTAA	2 cut(s)	39, 506
Tru9I	TTAA	2 cut(s)	39, 506
TscAI	CASTG	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	515
Tsp45I	GTSAC	1 cut(s)	515
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	163
VpaK11BI	GGWCC	1 cut(s)	129
VspI	ATTAAT	1 cut(s)	506
XspI	CTAG	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.