Rw3G013780

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0017327
Physical Location & Seq
Reverse (-)
13577626 .. 13579573
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G013780.1

Sequence Viewer

Length: 879 bp
ATGGAGCACAACTACTCCAACGATGGGGCATCGGAGACGAGGTTAAGTATTCAAGATTGGAATCATCTGGATTTGGAGGGGAAATCAAAGAGTCTTTTCAAAGTCTATTTCATTTCTGGTCGGAGATATGGTCCAGGGGATGCGATATTTGTAGTGTCCTGTGCTGTTGGTTTCTTCGTAGATCCTTTCTTCTTCTACATTTGGAACATCAACGACGATATCAAGTGTCTAAGCGCAGATAGCAGGTTGAGGATGTTATTTCTTGTTTTACGATCTGTTGTAGATTTCTTCTATGTAGCGGCCTATATGCGAAATTGTGGCAGACGTAATTCCAGCGACACATCTTGGTTCATTCAACTATTTCGCTTTATCGGAGCTGTTGATGTTACTCTTCCCATCCCACAGGTAGTTTTGCTGTCCAATGGCGCATTTTCTGTTCTGTCGTCTGTTAATCTAATACTATTACTGGCACAATATGTTCTACGGATTAGTCACATCTACGAATGGGTCAAGCATATTAACATCGACACTCGTATAGGAAGATTGGTTAAAGGGGTATTGGACTTTTGTCCTTTCATCCTTACTGCTCATTTATTTGGAGCCATGTGGTACTTTTTGGCTATTAAAAGAGAGACGAGGTGTTGGCTGAAAGCCTGTCAAAATGTTGAAGGATGTCATCCTGCAACTGATCGTGATTTTTCCTGTGGCAGAAATGGGTTTAAAGTGAAAGATATCACCATTGTAAACAGATTATGCCCTACAAATCCATTAAATGCATCGGCGTTGGACTTTGTTTGGTACAACGAGGACAACAAATTGCGGACCAAAGCTATTGCAATGCTTCTCATGGGGTTTGCGAAATTTGAGGTCAGCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans cNMP_binding

Protein Analysis

292

Amino Acids

33.47

Weight (kDa)

8.82

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017327)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15370 FvH4_6g15371
rosa_chinensis RchiOBHm_Chr3g0468811 RchiOBHm_Chr3g0468821
rosa_laevigata RLG00000024407
rosa_multiflora Rmu_sc0001639.1_g000023
rosa_roxburghii Rroxscaffold_6G00412530
rosa_rugosa Rorug03G0096700
rosa_samantha Rh3AG146400 Rh3AG146500 Rh3BG169000
rosa_wichuraiana Rw3G013770 Rw3G013780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 234
AciI CCGC 2 cut(s) 299, 820
AclWI GGATC 1 cut(s) 176
AcsI RAATTY 1 cut(s) 860
AfaI GTAC 2 cut(s) 611, 800
AfiI CCNNNNNNNGG 1 cut(s) 24
AgsI TTSAA 4 cut(s) 53, 100, 356, 668
AjnI CCWGG 1 cut(s) 133
AluBI AGCT 2 cut(s) 377, 830
AluI AGCT 2 cut(s) 377, 830
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 29, 626
AlwI GGATC 1 cut(s) 176
AoxI GGCC 1 cut(s) 300
ApoI RAATTY 1 cut(s) 860
AspLEI GCGC 2 cut(s) 236, 428
AspS9I GGNCC 2 cut(s) 131, 822
AsuHPI GGTGA 1 cut(s) 727
AvaII GGWCC 2 cut(s) 131, 822
Bbv12I GWGCWC 1 cut(s) 9
BccI CCATC 2 cut(s) 17, 404
BciT130I CCWGG 1 cut(s) 135
BcoDI GTCTC 2 cut(s) 29, 626
BfuAI ACCTGC 1 cut(s) 234
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
Bme1390I CCNGG 1 cut(s) 135
Bme18I GGWCC 2 cut(s) 131, 822
BmgT120I GGNCC 2 cut(s) 131, 822
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 1 cut(s) 135
BmsI GCATC 3 cut(s) 38, 130, 785
BoxI GACNNNNGTC 1 cut(s) 567
BsaBI GATNNNNATC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 134
BsaXI ACNNNNNCTCC 5 cut(s) 26, 29, 56, 115, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 24
Bse1I ACTGG 1 cut(s) 471
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 1 cut(s) 60
BseBI CCWGG 1 cut(s) 135
BseDI CCNNGG 1 cut(s) 134
BseGI GGATG 6 cut(s) 145, 258, 396, 576, 676, 677
BseJI GATNNNNATC 1 cut(s) 60
BseLI CCNNNNNNNGG 1 cut(s) 24
BseMI GCAATG 1 cut(s) 843
BseNI ACTGG 1 cut(s) 471
BshFI GGCC 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 24
BsmAI GTCTC 2 cut(s) 29, 626
BsmBI CGTCTC 2 cut(s) 29, 626
BsnI GGCC 1 cut(s) 302
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 3 cut(s) 181, 272, 688
BspACI CCGC 2 cut(s) 299, 820
BspANI GGCC 1 cut(s) 302
BspLI GGNNCC 1 cut(s) 601
BspMI ACCTGC 1 cut(s) 234
BspPI GGATC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 843
BsrI ACTGG 1 cut(s) 471
BssECI CCNNGG 1 cut(s) 134
BssMI GATC 3 cut(s) 181, 272, 688
Bst2UI CCWGG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 230, 876
BstF5I GGATG 6 cut(s) 145, 258, 396, 576, 676, 677
BstHHI GCGC 2 cut(s) 236, 428
BstKTI GATC 3 cut(s) 184, 275, 691
BstMAI GTCTC 2 cut(s) 29, 626
BstMBI GATC 3 cut(s) 181, 272, 688
BstMWI GCNNNNNNNGC 1 cut(s) 240
BstNI CCWGG 1 cut(s) 135
BstPAI GACNNNNGTC 1 cut(s) 567
BstSCI CCNGG 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 181
BstYI RGATCY 1 cut(s) 181
BsuRI GGCC 1 cut(s) 302
BtsCI GGATG 6 cut(s) 145, 258, 396, 576, 676, 677
BveI ACCTGC 1 cut(s) 234
CfoI GCGC 2 cut(s) 236, 428
Cfr13I GGNCC 2 cut(s) 131, 822
Csp6I GTAC 2 cut(s) 610, 799
CviAII CATG 2 cut(s) 604, 847
CviJI RGCY 7 cut(s) 302, 377, 602, 620, 646, 653, 830
CviKI_1 RGCY 7 cut(s) 302, 377, 602, 620, 646, 653, 830
CviQI GTAC 2 cut(s) 610, 799
DdeI CTNAG 2 cut(s) 230, 876
DpnI GATC 3 cut(s) 183, 274, 690
DpnII GATC 3 cut(s) 181, 272, 688
DraI TTTAAA 1 cut(s) 721
Eam1104I CTCTTC 1 cut(s) 396
EarI CTCTTC 1 cut(s) 396
Eco32I GATATC 2 cut(s) 220, 733
Eco47I GGWCC 2 cut(s) 131, 822
EcoRII CCWGG 1 cut(s) 133
EcoRV GATATC 2 cut(s) 220, 733
EcoT22I ATGCAT 1 cut(s) 778
Esp3I CGTCTC 2 cut(s) 29, 626
FaeI CATG 2 cut(s) 607, 850
FatI CATG 2 cut(s) 603, 846
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 6 cut(s) 152, 265, 383, 563, 663, 684
Fsp4HI GCNGC 1 cut(s) 300
GlaI GCGC 2 cut(s) 235, 427
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 302
HhaI GCGC 2 cut(s) 236, 428
Hin1II CATG 2 cut(s) 607, 850
Hin6I GCGC 2 cut(s) 234, 426
HinP1I GCGC 2 cut(s) 234, 426
HinfI GANTC 2 cut(s) 61, 91
HphI GGTGA 1 cut(s) 727
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 3 cut(s) 34, 123, 374
Hpy188III TCNNGA 3 cut(s) 53, 68, 692
Hpy8I GTNNAC 1 cut(s) 745
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 662
HpyCH4IV ACGT 1 cut(s) 325
HpyCH4V TGCA 3 cut(s) 683, 776, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 240
HpyF3I CTNAG 2 cut(s) 230, 876
HpySE526I ACGT 1 cut(s) 325
Hsp92II CATG 2 cut(s) 607, 850
HspAI GCGC 2 cut(s) 234, 426
Kzo9I GATC 3 cut(s) 181, 272, 688
LmnI GCTCC 3 cut(s) 4, 374, 599
LweI GCATC 3 cut(s) 38, 130, 785
MaeII ACGT 1 cut(s) 325
MaeIII GTNAC 2 cut(s) 385, 491
MalI GATC 3 cut(s) 183, 274, 690
MboI GATC 3 cut(s) 181, 272, 688
MboII GAAGA 6 cut(s) 166, 181, 184, 280, 383, 552
MflI RGATCY 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 4 cut(s) 313, 328, 815, 860
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 3 cut(s) 42, 101, 765
MnlI CCTC 6 cut(s) 33, 70, 243, 630, 799, 859
Mph1103I ATGCAT 1 cut(s) 778
MseI TTAA 7 cut(s) 44, 450, 519, 549, 624, 720, 770
MspR9I CCNGG 1 cut(s) 135
MvaI CCWGG 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 240
NdeII GATC 3 cut(s) 181, 272, 688
NlaIII CATG 2 cut(s) 607, 850
NlaIV GGNNCC 1 cut(s) 601
NmuCI GTSAC 1 cut(s) 491
NsiI ATGCAT 1 cut(s) 778
PfeI GAWTC 1 cut(s) 61
PkrI GCNGC 1 cut(s) 301
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 567
Psp6I CCWGG 1 cut(s) 133
PspGI CCWGG 1 cut(s) 133
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 2 cut(s) 131, 822
PsuI RGATCY 1 cut(s) 181
RsaI GTAC 2 cut(s) 611, 800
RsaNI GTAC 2 cut(s) 610, 799
SaqAI TTAA 7 cut(s) 44, 450, 519, 549, 624, 720, 770
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 3 cut(s) 181, 272, 688
Sau96I GGNCC 2 cut(s) 131, 822
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 135
SduI GDGCHC 1 cut(s) 9
SetI ASST 8 cut(s) 44, 248, 328, 379, 408, 641, 832, 870
SfaNI GCATC 3 cut(s) 38, 130, 785
SinI GGWCC 2 cut(s) 131, 822
Sse9I AATT 4 cut(s) 313, 328, 815, 860
SsiI CCGC 2 cut(s) 299, 820
StyD4I CCNGG 1 cut(s) 133
TaiI ACGT 1 cut(s) 328
TaqI TCGA 1 cut(s) 525
TasI AATT 4 cut(s) 313, 328, 815, 860
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 7 cut(s) 44, 450, 519, 549, 624, 720, 770
Tru9I TTAA 7 cut(s) 44, 450, 519, 549, 624, 720, 770
TseFI GTSAC 1 cut(s) 491
Tsp45I GTSAC 1 cut(s) 491
TspDTI ATGAA 3 cut(s) 100, 340, 565
TspGWI ACGGA 1 cut(s) 499
VpaK11BI GGWCC 2 cut(s) 131, 822
XapI RAATTY 1 cut(s) 860
Zsp2I ATGCAT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.