Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0017327

Physical Location & Seq

Genomic Coordinates Reverse (-)

14703988 .. 14704896

Gene Structure 909 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43468

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCAAAAGATATCTCCAGACATAGATTTGTGGTTGTCCAAAAATGCTGATGTCCCGAAGGATATGAAGACGGTGATCATGAAAACTGTACGATATAGAGTGGAAGAAAACAAAGATGTTGATGTGGAAAATATCGTCTATATTCTCTCCCCAGTTCATAAAAGACTTATCATGCGCCCCCTTTGCCTGGATTTGCTAAAAAAAGTGCCACTCCTTGAACATATGGACGTACAAGTGTTGAAAGCGATCTCCGAGCATCTTAACTGGGTGTTCTATGCCGTAGAAAGCTATATTATTCGAGAGGGGGAACCACTCGGAAAGATGTTCTTCATCAGGCAAGGCACCGCGTGGACCTACGCAACTCGTACTGATCACATCAGTGGTGGAAGTACAAGTGGCTCTTCGATCATAGACAACCTTGAGAAAGATGATCTCTATGGGGCAGAACTGCTAGAGTGGGCATTCAGTTTTGGCTCCTTTTCGAACTTGCCAATTTCAACAAGAACTGTTGTGTCCCAAGAAAGAGTTGAAGCTTTTGTTATCAGGGCCAAAGATTTGAAGAAAATTGTCTCTATGTTCTGGTGGCAGTTTAGCAGGAAACTCCAACTCCATGATATAGAGGATTCTCTGTTGAGGCAGTTGAAGTATCTGGCAATTTCTTCCTTGTTACGCCACCGTAAGGCAATGGCAAAGAGAGGAACTGGCTGGGACAAAGTTTACAGCAAATTAATCAAAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

247

Amino Acids

28.67

Weight (kDa)

9.23

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15370 FvH4_6g15371
rosa_chinensis	RchiOBHm_Chr3g0468811 RchiOBHm_Chr3g0468821
rosa_laevigata	RLG00000024407
rosa_multiflora	Rmu_sc0001639.1_g000023
rosa_roxburghii	Rroxscaffold_6G00412530
rosa_rugosa	Rorug03G0096700
rosa_samantha	Rh3AG146400 Rh3AG146500 Rh3BG169000
rosa_wichuraiana	Rw3G013770 Rw3G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	341
AccII	CGCG	1 cut(s)	347
AciI	CCGC	1 cut(s)	345
AdeI	CACNNNGTG	1 cut(s)	348
AfaI	GTAC	4 cut(s)	90, 231, 367, 391
AfiI	CCNNNNNNNGG	2 cut(s)	187, 679
AgsI	TTSAA	6 cut(s)	218, 241, 498, 530, 559, 643
AjnI	CCWGG	1 cut(s)	186
AleI	CACNNNNGTG	1 cut(s)	378
AluBI	AGCT	2 cut(s)	288, 533
AluI	AGCT	2 cut(s)	288, 533
Alw26I	GTCTC	1 cut(s)	574
AoxI	GGCC	1 cut(s)	546
AseI	ATTAAT	1 cut(s)	728
AspLEI	GCGC	1 cut(s)	177
AspS9I	GGNCC	2 cut(s)	351, 546
AsuHPI	GGTGA	1 cut(s)	85
AsuII	TTCGAA	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	351
BanI	GGYRCC	1 cut(s)	341
BbsI	GAAGAC	1 cut(s)	74
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	2 cut(s)	75, 370
BcoDI	GTCTC	1 cut(s)	574
BfaI	CTAG	1 cut(s)	452
Bme1390I	CCNGG	1 cut(s)	188
Bme18I	GGWCC	1 cut(s)	351
BmgT120I	GGNCC	2 cut(s)	351, 546
BmiI	GGNNCC	3 cut(s)	309, 343, 475
BmrFI	CCNGG	1 cut(s)	188
BmrI	ACTGGG	2 cut(s)	146, 274
BmsI	GCATC	1 cut(s)	265
BmuI	ACTGGG	2 cut(s)	146, 274
BpiI	GAAGAC	1 cut(s)	74
Bpu14I	TTCGAA	1 cut(s)	482
BpuEI	CTTGAG	1 cut(s)	440
BsaXI	ACNNNNNCTCC	2 cut(s)	591, 621
Bsc4I	CCNNNNNNNGG	2 cut(s)	187, 679
Bse1I	ACTGG	3 cut(s)	152, 269, 706
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	1 cut(s)	188
BseLI	CCNNNNNNNGG	2 cut(s)	187, 679
BseMI	GCAATG	1 cut(s)	690
BseNI	ACTGG	3 cut(s)	152, 269, 706
BseYI	CCCAGC	1 cut(s)	705
Bsh1236I	CGCG	1 cut(s)	347
BshFI	GGCC	1 cut(s)	548
BshNI	GGYRCC	1 cut(s)	341
BslFI	GGGAC	3 cut(s)	38, 499, 722
BslI	CCNNNNNNNGG	2 cut(s)	187, 679
BsmAI	GTCTC	1 cut(s)	574
BsmFI	GGGAC	3 cut(s)	38, 499, 722
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	1 cut(s)	548
Bsp119I	TTCGAA	1 cut(s)	482
Bsp143I	GATC	5 cut(s)	75, 246, 370, 405, 430
BspACI	CCGC	1 cut(s)	345
BspANI	GGCC	1 cut(s)	548
BspFNI	CGCG	1 cut(s)	347
BspHI	TCATGA	1 cut(s)	78
BspLI	GGNNCC	3 cut(s)	309, 343, 475
BspQI	GCTCTTC	1 cut(s)	406
BspT104I	TTCGAA	1 cut(s)	482
BspT107I	GGYRCC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	3 cut(s)	152, 269, 706
BssMI	GATC	5 cut(s)	75, 246, 370, 405, 430
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	4 cut(s)	73, 88, 508, 677
Bst6I	CTCTTC	1 cut(s)	406
BstBI	TTCGAA	1 cut(s)	482
BstFNI	CGCG	1 cut(s)	347
BstHHI	GCGC	1 cut(s)	177
BstKTI	GATC	5 cut(s)	78, 249, 373, 408, 433
BstMAI	GTCTC	1 cut(s)	574
BstMBI	GATC	5 cut(s)	75, 246, 370, 405, 430
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	347
BstV2I	GAAGAC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	548
BtsIMutI	CAGTG	1 cut(s)	385
CciI	TCATGA	1 cut(s)	78
CfoI	GCGC	1 cut(s)	177
Cfr13I	GGNCC	2 cut(s)	351, 546
Csp6I	GTAC	4 cut(s)	89, 230, 366, 390
CviAII	CATG	3 cut(s)	79, 172, 611
CviJI	RGCY	6 cut(s)	288, 399, 474, 533, 548, 705
CviKI_1	RGCY	6 cut(s)	288, 399, 474, 533, 548, 705
CviQI	GTAC	4 cut(s)	89, 230, 366, 390
DpnI	GATC	5 cut(s)	77, 248, 372, 407, 432
DpnII	GATC	5 cut(s)	75, 246, 370, 405, 430
DraIII	CACNNNGTG	1 cut(s)	348
Eam1104I	CTCTTC	1 cut(s)	406
EarI	CTCTTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	351
EcoRII	CCWGG	1 cut(s)	186
EcoRV	GATATC	1 cut(s)	12
FaeI	CATG	3 cut(s)	82, 175, 614
FalI	AAGNNNNNCTT	4 cut(s)	311, 343, 385, 417
FaqI	GGGAC	3 cut(s)	38, 499, 722
FatI	CATG	3 cut(s)	78, 171, 610
FauNDI	CATATG	1 cut(s)	222
FbaI	TGATCA	2 cut(s)	75, 370
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	176
GsaI	CCCAGC	1 cut(s)	709
HaeIII	GGCC	1 cut(s)	548
HhaI	GCGC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	82, 175, 614
Hin6I	GCGC	1 cut(s)	175
HinP1I	GCGC	1 cut(s)	175
HindIII	AAGCTT	1 cut(s)	531
HinfI	GANTC	1 cut(s)	623
HphI	GGTGA	1 cut(s)	85
Hpy166II	GTNNAC	2 cut(s)	351, 718
Hpy188I	TCNGA	2 cut(s)	253, 317
Hpy188III	TCNNGA	4 cut(s)	17, 55, 79, 299
Hpy8I	GTNNAC	2 cut(s)	351, 718
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	4 cut(s)	73, 88, 508, 677
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	3 cut(s)	82, 175, 614
HspAI	GCGC	1 cut(s)	175
Ksp22I	TGATCA	2 cut(s)	75, 370
Kzo9I	GATC	5 cut(s)	75, 246, 370, 405, 430
LguI	GCTCTTC	1 cut(s)	406
LmnI	GCTCC	1 cut(s)	479
LweI	GCATC	1 cut(s)	265
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	666, 737
MalI	GATC	5 cut(s)	77, 248, 372, 407, 432
MboI	GATC	5 cut(s)	75, 246, 370, 405, 430
MboII	GAAGA	6 cut(s)	79, 116, 319, 393, 571, 651
MluCI	AATT	4 cut(s)	492, 564, 654, 725
MmeI	TCCRAC	1 cut(s)	628
MnlI	CCTC	4 cut(s)	295, 613, 627, 689
MseI	TTAA	2 cut(s)	261, 728
MslI	CAYNNNNRTG	1 cut(s)	378
MspR9I	CCNGG	1 cut(s)	188
Mva1269I	GAATGC	1 cut(s)	461
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	347
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	5 cut(s)	75, 246, 370, 405, 430
NlaIII	CATG	3 cut(s)	82, 175, 614
NlaIV	GGNNCC	3 cut(s)	309, 343, 475
NmuCI	GTSAC	1 cut(s)	737
NspV	TTCGAA	1 cut(s)	482
OliI	CACNNNNGTG	1 cut(s)	378
PagI	TCATGA	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	406
PctI	GAATGC	1 cut(s)	461
PfeI	GAWTC	1 cut(s)	623
PshBI	ATTAAT	1 cut(s)	728
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	705
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	309, 343, 475
PspPI	GGNCC	2 cut(s)	351, 546
RsaI	GTAC	4 cut(s)	90, 231, 367, 391
RsaNI	GTAC	4 cut(s)	89, 230, 366, 390
RseI	CAYNNNNRTG	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	406
SaqAI	TTAA	2 cut(s)	261, 728
Sau3AI	GATC	5 cut(s)	75, 246, 370, 405, 430
Sau96I	GGNCC	2 cut(s)	351, 546
ScrFI	CCNGG	1 cut(s)	188
SetI	ASST	5 cut(s)	231, 290, 356, 420, 535
SfaNI	GCATC	1 cut(s)	265
SfuI	TTCGAA	1 cut(s)	482
SinI	GGWCC	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	378
SmlI	CTYRAG	1 cut(s)	419
SmoI	CTYRAG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	492, 564, 654, 725
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	186
TaaI	ACNGT	4 cut(s)	73, 88, 508, 677
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	3 cut(s)	298, 404, 482
TasI	AATT	4 cut(s)	492, 564, 654, 725
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	2 cut(s)	261, 728
Tru9I	TTAA	2 cut(s)	261, 728
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	737
TspDTI	ATGAA	4 cut(s)	80, 95, 146, 319
TspRI	CASTG	1 cut(s)	385
VpaK11BI	GGWCC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	728
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.