Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0017327

Physical Location & Seq

Genomic Coordinates Forward (+)

35565654 .. 35574220

Gene Structure 8567 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024407

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1707 bp

ATGGAGCACAACTACTCCAACGATGGGGCATCAGAGACGAGGTTTAAGGACTCGATTAGACAGAAGAAAAAGGAGGAAGCTGCTGCCCCTCATGGTCTAGGAAATCACTCTTTGACTGGTAGTTTGTTCTACCATATTCGAGATTGGAATCATCAGGATTTGGAGGGGAAATCAAAGAGTCTTTTCAAAGTCTATTTCATATCTGGTCGGAGATATGGTCCAGGGGATGCGATATTTGTAGTGTCCTGTGCTGTTGGTTTCTTCGTAGATCCTTTCTTCTTCTACATTTGGAACATCAACGACGTTATCAAGTGTCTAAGCGCAGATAGCAGGTTGAGGATGTTATTTCTTGTTTTACTATCTGTTGTAGATTTCTTCTATGTAGCGGCCTATATGCGAAATTGTGGCAGACGTAATTCCAGCGACACATCTTGGTTCATTCAACTATTTCGCTTTATCGGAGCTGTTGATGTTACTTTTCCCATCCCACAGGTAGTTTTGCTGTCCAATGGCGCATTTTCTGTTGTTAATCTAATACTTTTACTTGTCCAATATGTTCTACGGATTAGTCACATCTACGAATGGGTCAAGCATATTAACATCGACACTCGTATAGGAAGATTGGTTAAAGGGGTATTGGACTTTTGTCCTTTCATCCTCACTGCTCATTTTTTTGGAGCCATGTGGTACTTTTTGGCTATTAAAAGAGAGACGAGGTGTTGGCTGAAAGCCTGTCAAAATGTTGAAGGATGTCATCCTGCAACTGATCTGAAAGATATCACCATTGTAAACAGATTATGCCCTACAAATCCATCAAATGCATCGGCGTTGGACTTTGGTATATATCTTGATGTTATTAAGTTTGGTACAACGAGGACAACAAATTGCGGACCAAAGCTATTGCAATGCTTCTCATGGGGTTTGCGAAATTTGAGTTTAACAGGACTGGATTCCTTTAGTAAAAATGTCCAGTACAGAATTTACACATATAGGCAGTTGGCAAAAAAGGTATCAAAGAAGCTTAAATTCAACCAGAAGATGCAAAAGATATCTCCAGACATAGATTTGTGGTTGTCCAAAAATGCTGATGTCCCGAAGGATATGAAGACGGTGATCATGAAAACTGTACGATATAGAGTGGAAGAAAACAAAGATGTTGATGTGGAAAAGATCGTCTCTATTCTCTCCCCAGTTCATAAAAGACTTATCATGCGCCCCCTTTGCCTGGATTTGCTAAAAAAAGTAGACAGCCATATTATTCGAGAGGGGGAACCACTCGGAAAGATGTTCTTCATCAGGCAAGGCACCGCATGGACCTACGCAACTCGTACTGATCACATCAGTGGTGGAAGTACAAGTGGTTCTTCGATCACAGACAACCTTGAGAAAGATGATCTCTATGGGGCAGAACTGCTAGAGTGGGCATTCAGTTTTGGCTCCTTTTCGAACTTGCCAATTTCAACAAGAACTGTTATGTCCCAAGAAAGAGTTGAAGCTTTTGTTATCAGGGCCAAAGATTTGAAGAAAATTGTCTCCATGTTCTGGTGGCAGTTTAGCAGGAAACTCCAACTCCATGATATAGAGGATTCTCTGTTGAGGCAATTGAAGTATCTGGCAATTTCTTCCTTGATACGCCACCGTAAAGCAATGGCAAAGAGAGGAACTGGCTGGGACAAAGTTTACAGCAAATTAATCAAAAGTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006950 GO:0006952 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans cNMP_binding

Protein Analysis

569

Amino Acids

65.37

Weight (kDa)

9.54

Isoelectric Point (pI)

33.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017327)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15370 FvH4_6g15371
rosa_chinensis	RchiOBHm_Chr3g0468811 RchiOBHm_Chr3g0468821
rosa_laevigata	RLG00000024407
rosa_multiflora	Rmu_sc0001639.1_g000023
rosa_roxburghii	Rroxscaffold_6G00412530
rosa_rugosa	Rorug03G0096700
rosa_samantha	Rh3AG146400 Rh3AG146500 Rh3BG169000
rosa_wichuraiana	Rw3G013770 Rw3G013780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	321
AccB1I	GGYRCC	1 cut(s)	1304
AccB7I	CCANNNNNTGG	1 cut(s)	1542
AccI	GTMKAC	1 cut(s)	1245
AciI	CCGC	3 cut(s)	386, 888, 1308
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	3 cut(s)	928, 978, 1025
AfaI	GTAC	6 cut(s)	689, 868, 974, 1128, 1330, 1354
AfiI	CCNNNNNNNGG	3 cut(s)	24, 1225, 1542
AgsI	TTSAA	8 cut(s)	187, 443, 746, 1030, 1461, 1493, 1522, 1606
AjnI	CCWGG	2 cut(s)	220, 1224
AleI	CACNNNNGTG	1 cut(s)	1341
AluBI	AGCT	5 cut(s)	80, 464, 898, 1021, 1496
AluI	AGCT	5 cut(s)	80, 464, 898, 1021, 1496
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	4 cut(s)	29, 704, 1180, 1537
AlwI	GGATC	1 cut(s)	263
AoxI	GGCC	2 cut(s)	387, 1509
ApeKI	GCWGC	2 cut(s)	80, 83
ApoI	RAATTY	3 cut(s)	928, 978, 1025
ArsI	GACNNNNNNTTYG	2 cut(s)	106, 138
AseI	ATTAAT	1 cut(s)	1691
AspLEI	GCGC	3 cut(s)	323, 515, 1215
AspS9I	GGNCC	4 cut(s)	218, 890, 1314, 1509
AsuHPI	GGTGA	2 cut(s)	772, 1123
AsuII	TTCGAA	1 cut(s)	1445
AvaII	GGWCC	3 cut(s)	218, 890, 1314
BanI	GGYRCC	1 cut(s)	1304
BbsI	GAAGAC	1 cut(s)	1112
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	67, 70
BccI	CCATC	3 cut(s)	17, 491, 820
BciT130I	CCWGG	2 cut(s)	222, 1226
BclI	TGATCA	2 cut(s)	1113, 1333
BcoDI	GTCTC	4 cut(s)	29, 704, 1180, 1537
BfaI	CTAG	2 cut(s)	98, 1415
BfuAI	ACCTGC	1 cut(s)	321
BisI	GCNGC	3 cut(s)	81, 84, 387
BlsI	GCNGC	3 cut(s)	82, 85, 388
Bme1390I	CCNGG	2 cut(s)	222, 1226
Bme18I	GGWCC	3 cut(s)	218, 890, 1314
BmgT120I	GGNCC	4 cut(s)	218, 890, 1314, 1509
BmiI	GGNNCC	4 cut(s)	679, 1272, 1306, 1438
BmrFI	CCNGG	2 cut(s)	222, 1226
BmrI	ACTGGG	1 cut(s)	1184
BmsI	GCATC	4 cut(s)	38, 217, 830, 1029
BmuI	ACTGGG	1 cut(s)	1184
BoxI	GACNNNNGTC	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	1112
BpmI	CTGGAG	1 cut(s)	1038
Bpu14I	TTCGAA	1 cut(s)	1445
BpuEI	CTTGAG	1 cut(s)	1403
BsaBI	GATNNNNATC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	221
BsaXI	ACNNNNNCTCC	5 cut(s)	29, 202, 232, 1554, 1584
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 1225, 1542
Bse1I	ACTGG	5 cut(s)	121, 951, 970, 1190, 1669
Bse3DI	GCAATG	2 cut(s)	911, 1653
Bse8I	GATNNNNATC	1 cut(s)	147
BseBI	CCWGG	2 cut(s)	222, 1226
BseDI	CCNNGG	1 cut(s)	221
BseGI	GGATG	6 cut(s)	232, 345, 483, 654, 754, 755
BseJI	GATNNNNATC	1 cut(s)	147
BseLI	CCNNNNNNNGG	3 cut(s)	24, 1225, 1542
BseMI	GCAATG	2 cut(s)	911, 1653
BseNI	ACTGG	5 cut(s)	121, 951, 970, 1190, 1669
BseXI	GCAGC	2 cut(s)	67, 70
BseYI	CCCAGC	1 cut(s)	1668
BshFI	GGCC	2 cut(s)	389, 1511
BshNI	GGYRCC	1 cut(s)	1304
BsiHKAI	GWGCWC	1 cut(s)	9
BslFI	GGGAC	3 cut(s)	1076, 1462, 1685
BslI	CCNNNNNNNGG	3 cut(s)	24, 1225, 1542
BsmAI	GTCTC	4 cut(s)	29, 704, 1180, 1537
BsmBI	CGTCTC	3 cut(s)	29, 704, 1180
BsmFI	GGGAC	3 cut(s)	1076, 1462, 1685
BsmI	GAATGC	1 cut(s)	1424
BsnI	GGCC	2 cut(s)	389, 1511
Bsp119I	TTCGAA	1 cut(s)	1445
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
BspACI	CCGC	3 cut(s)	386, 888, 1308
BspANI	GGCC	2 cut(s)	389, 1511
BspHI	TCATGA	1 cut(s)	1116
BspLI	GGNNCC	4 cut(s)	679, 1272, 1306, 1438
BspMI	ACCTGC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	1445
BspT107I	GGYRCC	1 cut(s)	1304
BsrDI	GCAATG	2 cut(s)	911, 1653
BsrI	ACTGG	5 cut(s)	121, 951, 970, 1190, 1669
BssECI	CCNNGG	1 cut(s)	221
BssMI	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
Bst2UI	CCWGG	2 cut(s)	222, 1226
Bst4CI	ACNGT	4 cut(s)	1111, 1126, 1471, 1640
BstBI	TTCGAA	1 cut(s)	1445
BstDEI	CTNAG	1 cut(s)	317
BstF5I	GGATG	6 cut(s)	232, 345, 483, 654, 754, 755
BstHHI	GCGC	3 cut(s)	323, 515, 1215
BstKTI	GATC	7 cut(s)	271, 769, 1116, 1173, 1336, 1371, 1396
BstMAI	GTCTC	4 cut(s)	29, 704, 1180, 1537
BstMBI	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
BstMWI	GCNNNNNNNGC	2 cut(s)	327, 1221
BstNI	CCWGG	2 cut(s)	222, 1226
BstPAI	GACNNNNGTC	1 cut(s)	645
BstSCI	CCNGG	2 cut(s)	220, 1224
BstV1I	GCAGC	2 cut(s)	67, 70
BstV2I	GAAGAC	1 cut(s)	1112
BstX2I	RGATCY	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	268
BsuRI	GGCC	2 cut(s)	389, 1511
BtsCI	GGATG	6 cut(s)	232, 345, 483, 654, 754, 755
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	2 cut(s)	660, 1348
BveI	ACCTGC	1 cut(s)	321
CciI	TCATGA	1 cut(s)	1116
CfoI	GCGC	3 cut(s)	323, 515, 1215
Cfr13I	GGNCC	4 cut(s)	218, 890, 1314, 1509
Csp6I	GTAC	6 cut(s)	688, 867, 973, 1127, 1329, 1353
CviAII	CATG	8 cut(s)	92, 682, 915, 1117, 1210, 1311, 1537, 1574
CviQI	GTAC	6 cut(s)	688, 867, 973, 1127, 1329, 1353
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	7 cut(s)	270, 768, 1115, 1172, 1335, 1370, 1395
DpnII	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
Eco32I	GATATC	2 cut(s)	778, 1050
Eco47I	GGWCC	3 cut(s)	218, 890, 1314
EcoRII	CCWGG	2 cut(s)	220, 1224
EcoRV	GATATC	2 cut(s)	778, 1050
EcoT22I	ATGCAT	1 cut(s)	823
Esp3I	CGTCTC	3 cut(s)	29, 704, 1180
FaeI	CATG	8 cut(s)	95, 685, 918, 1120, 1213, 1314, 1540, 1577
FalI	AAGNNNNNCTT	4 cut(s)	1274, 1306, 1348, 1380
FaqI	GGGAC	3 cut(s)	1076, 1462, 1685
FatI	CATG	8 cut(s)	91, 681, 914, 1116, 1209, 1310, 1536, 1573
FbaI	TGATCA	2 cut(s)	1113, 1333
FblI	GTMKAC	1 cut(s)	1245
Fnu4HI	GCNGC	3 cut(s)	81, 84, 387
FokI	GGATG	6 cut(s)	239, 352, 470, 641, 741, 762
Fsp4HI	GCNGC	3 cut(s)	81, 84, 387
FspBI	CTAG	2 cut(s)	98, 1415
GlaI	GCGC	3 cut(s)	322, 514, 1214
GluI	GCNGC	3 cut(s)	81, 84, 387
GsaI	CCCAGC	1 cut(s)	1672
GsuI	CTGGAG	1 cut(s)	1038
HaeIII	GGCC	2 cut(s)	389, 1511
HhaI	GCGC	3 cut(s)	323, 515, 1215
Hin1II	CATG	8 cut(s)	95, 685, 918, 1120, 1213, 1314, 1540, 1577
Hin6I	GCGC	3 cut(s)	321, 513, 1213
HinP1I	GCGC	3 cut(s)	321, 513, 1213
HindIII	AAGCTT	2 cut(s)	1019, 1494
HinfI	GANTC	5 cut(s)	50, 148, 178, 950, 1586
HphI	GGTGA	2 cut(s)	772, 1123
Hpy166II	GTNNAC	3 cut(s)	790, 1246, 1681
Hpy188I	TCNGA	5 cut(s)	34, 210, 461, 771, 1280
Hpy188III	TCNNGA	7 cut(s)	140, 155, 848, 1055, 1093, 1117, 1262
Hpy8I	GTNNAC	3 cut(s)	790, 1246, 1681
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	740, 1090
HpyCH4III	ACNGT	4 cut(s)	1111, 1126, 1471, 1640
HpyCH4IV	ACGT	2 cut(s)	303, 412
HpyCH4V	TGCA	4 cut(s)	761, 821, 904, 1042
HpyF10VI	GCNNNNNNNGC	2 cut(s)	327, 1221
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	2 cut(s)	303, 412
Hsp92II	CATG	8 cut(s)	95, 685, 918, 1120, 1213, 1314, 1540, 1577
HspAI	GCGC	3 cut(s)	321, 513, 1213
Ksp22I	TGATCA	2 cut(s)	1113, 1333
Kzo9I	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
LmnI	GCTCC	4 cut(s)	4, 461, 677, 1442
Lsp1109I	GCAGC	2 cut(s)	67, 70
LweI	GCATC	4 cut(s)	38, 217, 830, 1029
MaeI	CTAG	2 cut(s)	98, 1415
MaeII	ACGT	2 cut(s)	303, 412
MaeIII	GTNAC	3 cut(s)	472, 569, 1700
MalI	GATC	7 cut(s)	270, 768, 1115, 1172, 1335, 1370, 1395
MboI	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
MfeI	CAATTG	1 cut(s)	1601
MflI	RGATCY	1 cut(s)	268
MhlI	GDGCHC	1 cut(s)	9
MlyI	GAGTC	2 cut(s)	44, 187
MmeI	TCCRAC	4 cut(s)	42, 188, 810, 1591
Mph1103I	ATGCAT	1 cut(s)	823
MseI	TTAA	9 cut(s)	45, 528, 597, 627, 702, 858, 938, 1023, 1691
MslI	CAYNNNNRTG	1 cut(s)	1341
MspR9I	CCNGG	2 cut(s)	222, 1226
MunI	CAATTG	1 cut(s)	1601
Mva1269I	GAATGC	1 cut(s)	1424
MvaI	CCWGG	2 cut(s)	222, 1226
MwoI	GCNNNNNNNGC	2 cut(s)	327, 1221
NdeII	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
NlaIII	CATG	8 cut(s)	95, 685, 918, 1120, 1213, 1314, 1540, 1577
NlaIV	GGNNCC	4 cut(s)	679, 1272, 1306, 1438
NmuCI	GTSAC	2 cut(s)	569, 1700
NsiI	ATGCAT	1 cut(s)	823
NspV	TTCGAA	1 cut(s)	1445
OliI	CACNNNNGTG	1 cut(s)	1341
PagI	TCATGA	1 cut(s)	1116
PctI	GAATGC	1 cut(s)	1424
PfeI	GAWTC	3 cut(s)	148, 950, 1586
PflMI	CCANNNNNTGG	1 cut(s)	1542
PkrI	GCNGC	3 cut(s)	82, 85, 388
PleI	GAGTC	2 cut(s)	44, 186
PpsI	GAGTC	2 cut(s)	44, 186
PshAI	GACNNNNGTC	1 cut(s)	645
PshBI	ATTAAT	1 cut(s)	1691
Psp6I	CCWGG	2 cut(s)	220, 1224
PspFI	CCCAGC	1 cut(s)	1668
PspGI	CCWGG	2 cut(s)	220, 1224
PspN4I	GGNNCC	4 cut(s)	679, 1272, 1306, 1438
PspPI	GGNCC	4 cut(s)	218, 890, 1314, 1509
PsrI	GAACNNNNNNTAC	2 cut(s)	1345, 1377
PsuI	RGATCY	1 cut(s)	268
RsaI	GTAC	6 cut(s)	689, 868, 974, 1128, 1330, 1354
RsaNI	GTAC	6 cut(s)	688, 867, 973, 1127, 1329, 1353
RseI	CAYNNNNRTG	1 cut(s)	1341
SaqAI	TTAA	9 cut(s)	45, 528, 597, 627, 702, 858, 938, 1023, 1691
SatI	GCNGC	3 cut(s)	81, 84, 387
Sau3AI	GATC	7 cut(s)	268, 766, 1113, 1170, 1333, 1368, 1393
Sau96I	GGNCC	4 cut(s)	218, 890, 1314, 1509
SchI	GAGTC	2 cut(s)	44, 187
ScrFI	CCNGG	2 cut(s)	222, 1226
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	4 cut(s)	38, 217, 830, 1029
SfuI	TTCGAA	1 cut(s)	1445
SinI	GGWCC	3 cut(s)	218, 890, 1314
SmiMI	CAYNNNNRTG	1 cut(s)	1341
SmlI	CTYRAG	1 cut(s)	1382
SmoI	CTYRAG	1 cut(s)	1382
SsiI	CCGC	3 cut(s)	386, 888, 1308
SspMI	CTAG	2 cut(s)	98, 1415
StyD4I	CCNGG	2 cut(s)	220, 1224
TaaI	ACNGT	4 cut(s)	1111, 1126, 1471, 1640
TaiI	ACGT	2 cut(s)	306, 415
TaqI	TCGA	6 cut(s)	53, 139, 603, 1261, 1367, 1445
TatI	WGTACW	2 cut(s)	972, 1352
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	3 cut(s)	148, 950, 1586
Tru1I	TTAA	9 cut(s)	45, 528, 597, 627, 702, 858, 938, 1023, 1691
Tru9I	TTAA	9 cut(s)	45, 528, 597, 627, 702, 858, 938, 1023, 1691
TscAI	CASTG	2 cut(s)	667, 1348
TseFI	GTSAC	2 cut(s)	569, 1700
TseI	GCWGC	2 cut(s)	80, 83
Tsp45I	GTSAC	2 cut(s)	569, 1700
TspDTI	ATGAA	7 cut(s)	187, 427, 643, 1118, 1133, 1184, 1282
TspGWI	ACGGA	1 cut(s)	577
TspRI	CASTG	2 cut(s)	667, 1348
Van91I	CCANNNNNTGG	1 cut(s)	1542
VpaK11BI	GGWCC	3 cut(s)	218, 890, 1314
VspI	ATTAAT	1 cut(s)	1691
XapI	RAATTY	3 cut(s)	928, 978, 1025
XmiI	GTMKAC	1 cut(s)	1245
XspI	CTAG	2 cut(s)	98, 1415
Zsp2I	ATGCAT	1 cut(s)	823

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.