FvH4_6g15900

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015654
Physical Location & Seq
Forward (+)
9918191 .. 9920798
2608 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15900.t1

Sequence Viewer

Length: 672 bp
ATGTTCGTACGAAGATTAGAAGAAGGAGCTTATCCATTTCCTCTTATTATAAAACGCAGAGCAATCAACGTTTTGGGTCATCAGAATTTTTCACATACACTCCACCAAAAACCAAAAAGAAAGTCCAACTCTTCCCACCAGTTCAAGCCAAACAACCCCCCATTCCCTCTCTTCAATCCATCAATGGCGTCCAGGATGACCAGCTTCCACTCCAAGCCCAACTACCTCTTCCCCTCCCACAACCCAATTCGCAACTCCGACGGAGTCTTCGAGTTCGACGACTCCGAGCTGTGGGTGAACCCCTCCAACGGTTCAAACCACCCTCCTGAGTCCAAGAAGCTGATGTCCACCATCCCCCGGGAGCCGAGGAGGAAGACGACGGCTGATCAGAAGGGCACTACCGCCGTGACGTCATCGTCGGTGCCGGTCAACATTCCGGACTGGTCAAAGATTCTGAAAGAGCAGAGGCAACAGAGAGACACGAGCGATGAAGATGTGAACGAGGACTACGAGGATGGTGACGCAGACGAGAGGCTTCCGCCTCATGAGTACTTGGCCAGGAACAGAGGAGCTTCGTTTTCTGTGCACGAAGGTGTTGGGAGGACTCTGAAGGGGAGGGACTTGAGGCGCGTGAGGAATGCGATTTGGAAGCAGGTTGGGTTCGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

224

Amino Acids

25.64

Weight (kDa)

9.58

Isoelectric Point (pI)

49.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 93 - 223 2.2e-39 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 50
AasI GACNNNNNNGTC 1 cut(s) 415
AatII GACGTC 1 cut(s) 413
Acc36I ACCTGC 1 cut(s) 643
AccB1I GGYRCC 1 cut(s) 421
AccII CGCG 1 cut(s) 630
AccIII TCCGGA 1 cut(s) 436
AciI CCGC 2 cut(s) 402, 539
AclI AACGTT 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 555
AcsI RAATTY 1 cut(s) 85
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 2 cut(s) 188, 410
AfaI GTAC 2 cut(s) 9, 551
AfiI CCNNNNNNNGG 3 cut(s) 291, 308, 357
AgsI TTSAA 3 cut(s) 145, 175, 315
AjnI CCWGG 2 cut(s) 191, 557
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AleI CACNNNNGTG 1 cut(s) 591
AluBI AGCT 5 cut(s) 29, 204, 289, 340, 572
AluI AGCT 5 cut(s) 29, 204, 289, 340, 572
Alw21I GWGCWC 1 cut(s) 588
Alw26I GTCTC 1 cut(s) 471
Alw44I GTGCAC 1 cut(s) 584
Ama87I CYCGRG 1 cut(s) 357
Aor13HI TCCGGA 1 cut(s) 436
AoxI GGCC 1 cut(s) 555
ApaLI GTGCAC 1 cut(s) 584
ApoI RAATTY 1 cut(s) 85
ArsI GACNNNNNNTTYG 4 cut(s) 107, 139, 251, 283
AspLEI GCGC 1 cut(s) 630
AsuC2I CCSGG 2 cut(s) 358, 359
AsuHPI GGTGA 2 cut(s) 307, 530
AsuII TTCGAA 1 cut(s) 663
AvaI CYCGRG 1 cut(s) 357
BaeGI GKGCMC 2 cut(s) 398, 588
BalI TGGCCA 1 cut(s) 557
BanI GGYRCC 1 cut(s) 421
BauI CACGAG 1 cut(s) 481
BbsI GAAGAC 2 cut(s) 259, 380
Bbv12I GWGCWC 1 cut(s) 588
BccI CCATC 3 cut(s) 187, 359, 509
BceAI ACGGC 2 cut(s) 389, 396
BciT130I CCWGG 2 cut(s) 193, 559
BclI TGATCA 1 cut(s) 385
BcnI CCSGG 2 cut(s) 358, 359
BcoDI GTCTC 1 cut(s) 471
BfuAI ACCTGC 1 cut(s) 643
BmcAI AGTACT 1 cut(s) 551
Bme1390I CCNGG 4 cut(s) 193, 358, 359, 559
BmeT110I CYCGRG 1 cut(s) 357
BmiI GGNNCC 2 cut(s) 363, 423
BmrFI CCNGG 4 cut(s) 193, 358, 359, 559
BpiI GAAGAC 2 cut(s) 259, 380
Bpu14I TTCGAA 1 cut(s) 663
BpuEI CTTGAG 1 cut(s) 643
BpuMI CCSGG 2 cut(s) 358, 359
BsaHI GRCGYC 2 cut(s) 188, 410
BsaJI CCNNGG 3 cut(s) 356, 357, 365
BsaWI WCCGGW 1 cut(s) 436
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 308, 357
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 2 cut(s) 139, 446
BseAI TCCGGA 1 cut(s) 436
BseBI CCWGG 2 cut(s) 193, 559
BseDI CCNNGG 3 cut(s) 356, 357, 365
BseGI GGATG 3 cut(s) 201, 351, 520
BseLI CCNNNNNNNGG 3 cut(s) 291, 308, 357
BseMII CTCAG 1 cut(s) 318
BseNI ACTGG 2 cut(s) 139, 446
BseRI GAGGAG 2 cut(s) 382, 582
BseSI GKGCMC 2 cut(s) 398, 588
Bsh1236I CGCG 1 cut(s) 630
BshFI GGCC 1 cut(s) 557
BshNI GGYRCC 1 cut(s) 421
BsiHKAI GWGCWC 1 cut(s) 588
BsiHKCI CYCGRG 1 cut(s) 357
BsiSI CCGG 3 cut(s) 358, 425, 437
BsiWI CGTACG 1 cut(s) 7
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 3 cut(s) 291, 308, 357
BsmAI GTCTC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 643
BsnI GGCC 1 cut(s) 557
BsoBI CYCGRG 1 cut(s) 357
Bsp119I TTCGAA 1 cut(s) 663
Bsp1286I GDGCHC 2 cut(s) 398, 588
Bsp13I TCCGGA 1 cut(s) 436
Bsp143I GATC 1 cut(s) 385
BspACI CCGC 2 cut(s) 402, 539
BspANI GGCC 1 cut(s) 557
BspCNI CTCAG 1 cut(s) 319
BspEI TCCGGA 1 cut(s) 436
BspFNI CGCG 1 cut(s) 630
BspHI TCATGA 1 cut(s) 544
BspLI GGNNCC 2 cut(s) 363, 423
BspMI ACCTGC 1 cut(s) 643
BspT104I TTCGAA 1 cut(s) 663
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 2 cut(s) 139, 446
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 3 cut(s) 356, 357, 365
BssMI GATC 1 cut(s) 385
BssNI GRCGYC 2 cut(s) 188, 410
BssSI CACGAG 1 cut(s) 481
Bst2BI CACGAG 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 193, 559
Bst4CI ACNGT 1 cut(s) 311
Bst6I CTCTTC 3 cut(s) 136, 176, 233
BstACI GRCGYC 2 cut(s) 188, 410
BstBI TTCGAA 1 cut(s) 663
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 3 cut(s) 201, 351, 520
BstFNI CGCG 1 cut(s) 630
BstHHI GCGC 1 cut(s) 630
BstKTI GATC 1 cut(s) 388
BstMAI GTCTC 1 cut(s) 471
BstMBI GATC 1 cut(s) 385
BstNI CCWGG 2 cut(s) 193, 559
BstSCI CCNGG 4 cut(s) 191, 356, 357, 557
BstSLI GKGCMC 2 cut(s) 398, 588
BstUI CGCG 1 cut(s) 630
BstV2I GAAGAC 2 cut(s) 259, 380
BsuRI GGCC 1 cut(s) 557
BtgZI GCGATG 1 cut(s) 501
BtsCI GGATG 3 cut(s) 201, 351, 520
BveI ACCTGC 1 cut(s) 643
CciI TCATGA 1 cut(s) 544
CfoI GCGC 1 cut(s) 630
Cfr10I RCCGGY 1 cut(s) 424
Cfr9I CCCGGG 1 cut(s) 357
CseI GACGC 2 cut(s) 177, 530
Csp6I GTAC 2 cut(s) 8, 550
CviAII CATG 1 cut(s) 545
CviQI GTAC 2 cut(s) 8, 550
DdeI CTNAG 1 cut(s) 327
DpnI GATC 1 cut(s) 387
DpnII GATC 1 cut(s) 385
DrdI GACNNNNNNGTC 1 cut(s) 415
DseDI GACNNNNNNGTC 1 cut(s) 415
EaeI YGGCCR 1 cut(s) 555
Eam1104I CTCTTC 3 cut(s) 136, 176, 233
EarI CTCTTC 3 cut(s) 136, 176, 233
EciI GGCGGA 1 cut(s) 528
Eco57I CTGAAG 1 cut(s) 629
Eco88I CYCGRG 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 191, 557
FaeI CATG 1 cut(s) 548
FaiI YATR 3 cut(s) 50, 96, 546
FaqI GGGAC 1 cut(s) 632
FatI CATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 385
FokI GGATG 3 cut(s) 208, 338, 527
GlaI GCGC 1 cut(s) 629
HaeIII GGCC 1 cut(s) 557
HapII CCGG 3 cut(s) 358, 425, 437
HgaI GACGC 2 cut(s) 177, 530
HhaI GCGC 1 cut(s) 630
Hin1I GRCGYC 2 cut(s) 188, 410
Hin1II CATG 1 cut(s) 548
Hin6I GCGC 1 cut(s) 628
HinP1I GCGC 1 cut(s) 628
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 5 cut(s) 264, 281, 329, 451, 604
HpaII CCGG 3 cut(s) 358, 425, 437
HphI GGTGA 2 cut(s) 307, 530
Hpy166II GTNNAC 5 cut(s) 298, 348, 430, 499, 586
Hpy188I TCNGA 6 cut(s) 84, 259, 286, 390, 456, 609
Hpy188III TCNNGA 3 cut(s) 326, 437, 545
Hpy8I GTNNAC 5 cut(s) 298, 348, 430, 499, 586
Hpy99I CGWCG 4 cut(s) 263, 281, 382, 421
HpyAV CCTTC 4 cut(s) 17, 385, 584, 604
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 2 cut(s) 69, 410
HpyCH4V TGCA 1 cut(s) 586
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 2 cut(s) 69, 410
Hsp92I GRCGYC 2 cut(s) 188, 410
Hsp92II CATG 1 cut(s) 548
HspAI GCGC 1 cut(s) 628
Kpn2I TCCGGA 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 1 cut(s) 385
LmnI GCTCC 3 cut(s) 26, 361, 569
MaeII ACGT 2 cut(s) 69, 410
MaeIII GTNAC 2 cut(s) 406, 518
MalI GATC 1 cut(s) 387
MboI GATC 1 cut(s) 385
MboII GAAGA 8 cut(s) 24, 32, 123, 163, 220, 259, 385, 503
MhlI GDGCHC 2 cut(s) 398, 588
MlsI TGGCCA 1 cut(s) 557
MluCI AATT 2 cut(s) 85, 246
MluNI TGGCCA 1 cut(s) 557
MlyI GAGTC 4 cut(s) 273, 275, 338, 598
MmeI TCCRAC 3 cut(s) 150, 282, 330
Mox20I TGGCCA 1 cut(s) 557
MroI TCCGGA 1 cut(s) 436
MscI TGGCCA 1 cut(s) 557
MslI CAYNNNNRTG 1 cut(s) 591
Msp20I TGGCCA 1 cut(s) 557
MspI CCGG 3 cut(s) 358, 425, 437
MspR9I CCNGG 4 cut(s) 193, 358, 359, 559
Mva1269I GAATGC 1 cut(s) 643
MvaI CCWGG 2 cut(s) 193, 559
MvnI CGCG 1 cut(s) 630
NciI CCSGG 2 cut(s) 358, 359
NdeII GATC 1 cut(s) 385
NlaIII CATG 1 cut(s) 548
NlaIV GGNNCC 2 cut(s) 363, 423
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 2 cut(s) 406, 518
NspV TTCGAA 1 cut(s) 663
OliI CACNNNNGTG 1 cut(s) 591
PagI TCATGA 1 cut(s) 544
PcsI WCGNNNNNNNCGW 4 cut(s) 267, 276, 282, 507
PctI GAATGC 1 cut(s) 643
PfeI GAWTC 1 cut(s) 451
Pfl23II CGTACG 1 cut(s) 7
PflFI GACNNNGTC 1 cut(s) 263
PfoI TCCNGGA 1 cut(s) 191
PleI GAGTC 4 cut(s) 272, 275, 337, 598
PpsI GAGTC 4 cut(s) 272, 275, 337, 598
PsiI TTATAA 1 cut(s) 50
Psp1406I AACGTT 1 cut(s) 69
Psp6I CCWGG 2 cut(s) 191, 557
PspGI CCWGG 2 cut(s) 191, 557
PspLI CGTACG 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 363, 423
PsrI GAACNNNNNNTAC 2 cut(s) 491, 523
PsyI GACNNNGTC 1 cut(s) 263
RsaI GTAC 2 cut(s) 9, 551
RsaNI GTAC 2 cut(s) 8, 550
RseI CAYNNNNRTG 1 cut(s) 591
Sau3AI GATC 1 cut(s) 385
ScaI AGTACT 1 cut(s) 551
SchI GAGTC 4 cut(s) 273, 275, 338, 598
ScrFI CCNGG 4 cut(s) 193, 358, 359, 559
SduI GDGCHC 2 cut(s) 398, 588
SfuI TTCGAA 1 cut(s) 663
SmaI CCCGGG 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 591
SmlI CTYRAG 1 cut(s) 622
SmoI CTYRAG 1 cut(s) 622
Sse9I AATT 2 cut(s) 85, 246
SsiI CCGC 2 cut(s) 402, 539
StyD4I CCNGG 4 cut(s) 191, 356, 357, 557
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 2 cut(s) 72, 413
TaqI TCGA 3 cut(s) 270, 276, 663
TasI AATT 2 cut(s) 85, 246
TatI WGTACW 1 cut(s) 549
TfiI GAWTC 1 cut(s) 451
TseFI GTSAC 2 cut(s) 406, 518
Tsp45I GTSAC 2 cut(s) 406, 518
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 276
TspMI CCCGGG 1 cut(s) 357
Tth111I GACNNNGTC 1 cut(s) 263
VneI GTGCAC 1 cut(s) 584
XapI RAATTY 1 cut(s) 85
XmaI CCCGGG 1 cut(s) 357
ZraI GACGTC 1 cut(s) 411
ZrmI AGTACT 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.