MD04G1097800.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015654
Physical Location & Seq
Reverse (-)
18166603 .. 18167139
537 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1097800.v1.1.491

Sequence Viewer

Length: 537 bp
ATGGCGTCGAGGAAGTCGGCCTTTTATGGAAAACCCAGTTCCATTTTTCCAGCCTCGTCTATGGACGACAGCGCAGTTGGCTCAGATGGGCTGTTCGAATTCGACGAGGCGGATATCTGCAACGCATCATCCAGCACAGTTACTGAGTCCAAGAAGAGCACAATTCTCAGCCACAGTGAGCCGAAGAAAATGGGGAGGAGGATGATGGTGAAGAACATGAGCATGGCGGAGAAGGGTGCCGCCGACAAGGTGATGCCATCGTCGCTGCCGGTGAACATTCCGGACTGGTCCAAGATTCTCAAAGACGGGTACAAAGAACAGAGGAAGCTGGACAGTGATGAACACTGCGGTGGAGAATTCTACGGTGACGATGAGGAGGACGACGGCGGAGATGGGAGGGTTCCGCCTCATGAGTACTTGGCGAGGACGAGAGGGGCTTCGTTTTCCGTCCATGAAGGGATTGGGAGGACTCTGAAAGGCAGAGACTTGAGGCGGGTGCGAAATGCAATTTGGAAAAAAGTTGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

179

Amino Acids

19.63

Weight (kDa)

6.12

Isoelectric Point (pI)

50.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 46 - 178 5.9e-37 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 7 cut(s) 110, 227, 240, 348, 387, 404, 493
AcsI RAATTY 2 cut(s) 98, 356
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 311, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AleI CACNNNNGTG 1 cut(s) 348
AluBI AGCT 1 cut(s) 328
AluI AGCT 1 cut(s) 328
Alw21I GWGCWC 1 cut(s) 161
Alw26I GTCTC 1 cut(s) 477
AlwNI CAGNNNCTG 1 cut(s) 143
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 18
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 2 cut(s) 98, 356
AspLEI GCGC 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 288
AsuHPI GGTGA 4 cut(s) 220, 262, 283, 377
AsuII TTCGAA 2 cut(s) 96, 528
AvaII GGWCC 1 cut(s) 288
BanI GGYRCC 1 cut(s) 236
Bbv12I GWGCWC 1 cut(s) 161
BbvI GCAGC 1 cut(s) 252
BccI CCATC 4 cut(s) 80, 199, 265, 386
BceAI ACGGC 1 cut(s) 400
BcoDI GTCTC 1 cut(s) 477
BisI GCNGC 2 cut(s) 240, 266
BlsI GCNGC 2 cut(s) 241, 267
BmcAI AGTACT 1 cut(s) 416
Bme18I GGWCC 1 cut(s) 288
BmgT120I GGNCC 1 cut(s) 288
BmiI GGNNCC 2 cut(s) 238, 402
BmrI ACTGGG 1 cut(s) 30
BmsI GCATC 2 cut(s) 134, 243
BmuI ACTGGG 1 cut(s) 30
Bpu14I TTCGAA 2 cut(s) 96, 528
BpuEI CTTGAG 1 cut(s) 508
BsaHI GRCGYC 1 cut(s) 5
BsaWI WCCGGW 1 cut(s) 280
Bse118I RCCGGY 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 36, 290
BseAI TCCGGA 1 cut(s) 280
BseGI GGATG 2 cut(s) 128, 207
BseMII CTCAG 3 cut(s) 96, 135, 181
BseNI ACTGG 2 cut(s) 36, 290
BseRI GAGGAG 2 cut(s) 211, 389
BseXI GCAGC 1 cut(s) 252
BshFI GGCC 1 cut(s) 20
BshNI GGYRCC 1 cut(s) 236
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 269, 281
BsmAI GTCTC 1 cut(s) 477
BsnI GGCC 1 cut(s) 20
Bsp119I TTCGAA 2 cut(s) 96, 528
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 280
BspACI CCGC 7 cut(s) 110, 227, 240, 348, 387, 404, 493
BspANI GGCC 1 cut(s) 20
BspCNI CTCAG 3 cut(s) 95, 136, 180
BspEI TCCGGA 1 cut(s) 280
BspHI TCATGA 1 cut(s) 409
BspLI GGNNCC 2 cut(s) 238, 402
BspQI GCTCTTC 1 cut(s) 149
BspT104I TTCGAA 2 cut(s) 96, 528
BspT107I GGYRCC 1 cut(s) 236
BsrFI RCCGGY 1 cut(s) 268
BsrI ACTGG 2 cut(s) 36, 290
BssAI RCCGGY 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 5
Bst4CI ACNGT 4 cut(s) 139, 176, 335, 365
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 2 cut(s) 96, 528
BstDEI CTNAG 3 cut(s) 82, 144, 167
BstF5I GGATG 2 cut(s) 128, 207
BstHHI GCGC 1 cut(s) 74
BstMAI GTCTC 1 cut(s) 477
BstMWI GCNNNNNNNGC 2 cut(s) 78, 262
BstV1I GCAGC 1 cut(s) 252
BsuRI GGCC 1 cut(s) 20
BtsCI GGATG 2 cut(s) 128, 207
BtsI GCAGTG 1 cut(s) 343
BtsIMutI CAGTG 3 cut(s) 181, 340, 343
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 1 cut(s) 409
CfoI GCGC 1 cut(s) 74
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 1 cut(s) 288
Csp6I GTAC 2 cut(s) 310, 415
CviAII CATG 4 cut(s) 217, 223, 410, 452
CviJI RGCY 8 cut(s) 20, 53, 81, 91, 171, 181, 328, 437
CviKI_1 RGCY 8 cut(s) 20, 53, 81, 91, 171, 181, 328, 437
CviQI GTAC 2 cut(s) 310, 415
DdeI CTNAG 3 cut(s) 82, 144, 167
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 4 cut(s) 125, 242, 393, 402
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 288
EcoRI GAATTC 2 cut(s) 98, 356
EcoRV GATATC 1 cut(s) 115
FaeI CATG 4 cut(s) 220, 226, 413, 455
FaiI YATR 6 cut(s) 27, 62, 218, 224, 411, 453
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 4 cut(s) 216, 222, 409, 451
FauI CCCGC 1 cut(s) 486
Fnu4HI GCNGC 2 cut(s) 240, 266
FokI GGATG 2 cut(s) 115, 214
Fsp4HI GCNGC 2 cut(s) 240, 266
GlaI GCGC 1 cut(s) 73
GluI GCNGC 2 cut(s) 240, 266
HaeIII GGCC 1 cut(s) 20
HapII CCGG 2 cut(s) 269, 281
HhaI GCGC 1 cut(s) 74
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 220, 226, 413, 455
Hin6I GCGC 1 cut(s) 72
HinP1I GCGC 1 cut(s) 72
HinfI GANTC 3 cut(s) 146, 295, 469
HpaII CCGG 2 cut(s) 269, 281
HphI GGTGA 4 cut(s) 220, 262, 283, 377
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 2 cut(s) 85, 474
Hpy188III TCNNGA 2 cut(s) 281, 410
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 4 cut(s) 10, 107, 265, 386
HpyAV CCTTC 2 cut(s) 226, 449
HpyCH4III ACNGT 4 cut(s) 139, 176, 335, 365
HpyCH4V TGCA 2 cut(s) 120, 506
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 262
HpyF3I CTNAG 3 cut(s) 82, 144, 167
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 220, 226, 413, 455
HspAI GCGC 1 cut(s) 72
Kpn2I TCCGGA 1 cut(s) 280
LguI GCTCTTC 1 cut(s) 149
LpnPI CCDG 7 cut(s) 49, 63, 145, 271, 282, 294, 314
Lsp1109I GCAGC 1 cut(s) 252
LweI GCATC 2 cut(s) 134, 243
MaeIII GTNAC 2 cut(s) 139, 365
MboII GAAGA 3 cut(s) 166, 196, 223
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 4 cut(s) 98, 162, 356, 507
MlyI GAGTC 2 cut(s) 155, 463
MroI TCCGGA 1 cut(s) 280
MslI CAYNNNNRTG 2 cut(s) 221, 348
MspI CCGG 2 cut(s) 269, 281
MwoI GCNNNNNNNGC 2 cut(s) 78, 262
NlaIII CATG 4 cut(s) 220, 226, 413, 455
NlaIV GGNNCC 2 cut(s) 238, 402
NmuCI GTSAC 1 cut(s) 365
NspV TTCGAA 2 cut(s) 96, 528
OliI CACNNNNGTG 1 cut(s) 348
PagI TCATGA 1 cut(s) 409
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 241, 267
PleI GAGTC 2 cut(s) 154, 463
PpsI GAGTC 2 cut(s) 154, 463
PspN4I GGNNCC 2 cut(s) 238, 402
PspPI GGNCC 1 cut(s) 288
PstNI CAGNNNCTG 1 cut(s) 143
RsaI GTAC 2 cut(s) 311, 416
RsaNI GTAC 2 cut(s) 310, 415
RseI CAYNNNNRTG 2 cut(s) 221, 348
SapI GCTCTTC 1 cut(s) 149
SatI GCNGC 2 cut(s) 240, 266
Sau96I GGNCC 1 cut(s) 288
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 2 cut(s) 155, 463
SduI GDGCHC 1 cut(s) 161
SetI ASST 2 cut(s) 252, 330
SfaNI GCATC 2 cut(s) 134, 243
SfuI TTCGAA 2 cut(s) 96, 528
SinI GGWCC 1 cut(s) 288
SmiMI CAYNNNNRTG 2 cut(s) 221, 348
SmlI CTYRAG 1 cut(s) 487
SmoI CTYRAG 1 cut(s) 487
Sse9I AATT 4 cut(s) 98, 162, 356, 507
SsiI CCGC 7 cut(s) 110, 227, 240, 348, 387, 404, 493
TaaI ACNGT 4 cut(s) 139, 176, 335, 365
TaqI TCGA 4 cut(s) 8, 96, 102, 528
TasI AATT 4 cut(s) 98, 162, 356, 507
TatI WGTACW 1 cut(s) 414
TauI GCSGC 1 cut(s) 242
TfiI GAWTC 1 cut(s) 295
TscAI CASTG 3 cut(s) 181, 340, 350
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 2 cut(s) 354, 468
TspGWI ACGGA 1 cut(s) 436
TspRI CASTG 3 cut(s) 181, 340, 350
VpaK11BI GGWCC 1 cut(s) 288
XapI RAATTY 2 cut(s) 98, 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 458
ZrmI AGTACT 1 cut(s) 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.