Prupe.6G236700_v2.0.a1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0015654
Physical Location & Seq
Reverse (-)
23735735 .. 23736813
1079 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G236700.1

Sequence Viewer

Length: 510 bp
ATGGCGTCGAGGAAGGCCATCTTCCCCACCTCGTCGATCGGCGACAACCCAATTGGCTCAGACGGGCTCTTCGAGTTCGACGAGGCCGATATATGGAGCTCGTCGAACCCAGTTGCAGAACAGAAGAAGAACGCCATACCCAGTTACAGAGAGCTGAAGAAAATGGGGAGGAAGACGACGATGCTGATGAGCATGGCTGATCAGAAAAATAGTGCCAAGGTGACGTCAGCGTCGTTGCCGGTGAACATTCCGGACTGGTCCAATATTCTGAAAGAGGCGTACAAAGACCAGAGGCAGAGAGACAGCGATGAAGACCGCGGAAAAGAAGATTTTGACGGTGGCGATGATGATGATGATGGCGGAGATGGGAGGGTCCCGCCTCACGAGTACTTGGCGAGGACGAGAGGGGCTTCGTTTTCTGTTCATGAAGGGATTGGGAGGACCTTGAAAGGCAGAGACTTGAGGCGAGTGAGAAACGCGATTTGGAAAAAAGTTGGGTTCGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

170

Amino Acids

18.87

Weight (kDa)

5.79

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
AatII GACGTC 1 cut(s) 227
AccII CGCG 2 cut(s) 318, 479
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 4 cut(s) 316, 318, 360, 377
AcuI CTGAAG 1 cut(s) 176
AcyI GRCGYC 2 cut(s) 5, 224
AfaI GTAC 2 cut(s) 281, 389
AfiI CCNNNNNNNGG 1 cut(s) 93
AgsI TTSAA 1 cut(s) 448
AjuI GAANNNNNNNTTGG 2 cut(s) 466, 498
AluBI AGCT 2 cut(s) 99, 154
AluI AGCT 2 cut(s) 99, 154
Alw21I GWGCWC 1 cut(s) 101
Alw26I GTCTC 2 cut(s) 294, 450
Aor13HI TCCGGA 1 cut(s) 250
AoxI GGCC 2 cut(s) 15, 84
ArsI GACNNNNNNTTYG 2 cut(s) 53, 85
AspS9I GGNCC 3 cut(s) 258, 373, 441
AsuHPI GGTGA 2 cut(s) 232, 253
AsuII TTCGAA 1 cut(s) 501
AvaII GGWCC 3 cut(s) 258, 373, 441
BanII GRGCYC 2 cut(s) 69, 101
BauI CACGAG 1 cut(s) 383
BbsI GAAGAC 2 cut(s) 179, 318
Bbv12I GWGCWC 1 cut(s) 101
BccI CCATC 3 cut(s) 26, 350, 359
BclI TGATCA 1 cut(s) 199
BcoDI GTCTC 2 cut(s) 294, 450
BmcAI AGTACT 1 cut(s) 389
Bme18I GGWCC 3 cut(s) 258, 373, 441
BmgT120I GGNCC 3 cut(s) 258, 373, 441
BmiI GGNNCC 2 cut(s) 374, 375
BmrI ACTGGG 2 cut(s) 104, 135
BmsI GCATC 1 cut(s) 171
BmuI ACTGGG 2 cut(s) 104, 135
BpiI GAAGAC 2 cut(s) 179, 318
Bpu14I TTCGAA 1 cut(s) 501
BpuEI CTTGAG 1 cut(s) 481
BsaHI GRCGYC 2 cut(s) 5, 224
BsaJI CCNNGG 2 cut(s) 216, 316
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 93
Bse118I RCCGGY 1 cut(s) 238
Bse1I ACTGG 3 cut(s) 110, 141, 260
BseAI TCCGGA 1 cut(s) 250
BseDI CCNNGG 2 cut(s) 216, 316
BseLI CCNNNNNNNGG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 110, 141, 260
Bsh1236I CGCG 2 cut(s) 318, 479
Bsh1285I CGRYCG 1 cut(s) 39
BshFI GGCC 2 cut(s) 17, 86
BsiEI CGRYCG 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 101
BsiSI CCGG 2 cut(s) 239, 251
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 93
BsmAI GTCTC 2 cut(s) 294, 450
BsmFI GGGAC 1 cut(s) 359
BsnI GGCC 2 cut(s) 17, 86
Bsp119I TTCGAA 1 cut(s) 501
Bsp1286I GDGCHC 2 cut(s) 69, 101
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 2 cut(s) 36, 199
BspACI CCGC 4 cut(s) 316, 318, 360, 377
BspANI GGCC 2 cut(s) 17, 86
BspCNI CTCAG 1 cut(s) 71
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 2 cut(s) 318, 479
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 374, 375
BspQI GCTCTTC 1 cut(s) 74
BspT104I TTCGAA 1 cut(s) 501
BsrFI RCCGGY 1 cut(s) 238
BsrI ACTGG 3 cut(s) 110, 141, 260
BssAI RCCGGY 1 cut(s) 238
BssECI CCNNGG 2 cut(s) 216, 316
BssMI GATC 2 cut(s) 36, 199
BssNI GRCGYC 2 cut(s) 5, 224
BssSI CACGAG 1 cut(s) 383
BssT1I CCWWGG 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 383
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 74
BstACI GRCGYC 2 cut(s) 5, 224
BstBI TTCGAA 1 cut(s) 501
BstDEI CTNAG 1 cut(s) 58
BstDSI CCRYGG 1 cut(s) 316
BstFNI CGCG 2 cut(s) 318, 479
BstKTI GATC 2 cut(s) 39, 202
BstMAI GTCTC 2 cut(s) 294, 450
BstMBI GATC 2 cut(s) 36, 199
BstMCI CGRYCG 1 cut(s) 39
BstUI CGCG 2 cut(s) 318, 479
BstV2I GAAGAC 2 cut(s) 179, 318
BsuRI GGCC 2 cut(s) 17, 86
BtgI CCRYGG 1 cut(s) 316
BtgZI GCGATG 2 cut(s) 321, 357
CciI TCATGA 1 cut(s) 424
Cfr10I RCCGGY 1 cut(s) 238
Cfr13I GGNCC 3 cut(s) 258, 373, 441
Cfr42I CCGCGG 1 cut(s) 319
CseI GACGC 1 cut(s) 219
Csp6I GTAC 2 cut(s) 280, 388
CviAII CATG 2 cut(s) 193, 425
CviJI RGCY 8 cut(s) 17, 57, 67, 86, 99, 154, 197, 410
CviKI_1 RGCY 8 cut(s) 17, 57, 67, 86, 99, 154, 197, 410
CviQI GTAC 2 cut(s) 280, 388
DdeI CTNAG 1 cut(s) 58
DpnI GATC 2 cut(s) 38, 201
DpnII GATC 2 cut(s) 36, 199
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eam1104I CTCTTC 1 cut(s) 74
EarI CTCTTC 1 cut(s) 74
EciI GGCGGA 1 cut(s) 375
Ecl136II GAGCTC 1 cut(s) 99
Eco130I CCWWGG 1 cut(s) 216
Eco24I GRGCYC 2 cut(s) 69, 101
Eco47I GGWCC 3 cut(s) 258, 373, 441
Eco53kI GAGCTC 1 cut(s) 99
Eco57I CTGAAG 1 cut(s) 176
EcoICRI GAGCTC 1 cut(s) 99
EcoO109I RGGNCCY 2 cut(s) 373, 441
EcoT14I CCWWGG 1 cut(s) 216
EcoT38I GRGCYC 2 cut(s) 69, 101
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 196, 428
FaiI YATR 5 cut(s) 92, 94, 137, 194, 426
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 359
FatI CATG 2 cut(s) 192, 424
FauI CCCGC 1 cut(s) 384
FbaI TGATCA 1 cut(s) 199
FriOI GRGCYC 2 cut(s) 69, 101
HaeIII GGCC 2 cut(s) 17, 86
HapII CCGG 2 cut(s) 239, 251
HgaI GACGC 1 cut(s) 219
Hin1I GRCGYC 2 cut(s) 5, 224
Hin1II CATG 2 cut(s) 196, 428
HpaII CCGG 2 cut(s) 239, 251
HphI GGTGA 2 cut(s) 232, 253
Hpy166II GTNNAC 1 cut(s) 244
Hpy188I TCNGA 3 cut(s) 61, 204, 270
Hpy188III TCNNGA 3 cut(s) 251, 383, 425
Hpy8I GTNNAC 1 cut(s) 244
Hpy99I CGWCG 6 cut(s) 10, 37, 83, 106, 181, 235
HpyAV CCTTC 2 cut(s) 7, 422
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 224
Hsp92I GRCGYC 2 cut(s) 5, 224
Hsp92II CATG 2 cut(s) 196, 428
KflI GGGWCCC 1 cut(s) 373
Kpn2I TCCGGA 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 199
KspI CCGCGG 1 cut(s) 319
Kzo9I GATC 2 cut(s) 36, 199
LguI GCTCTTC 1 cut(s) 74
LmnI GCTCC 1 cut(s) 96
LpnPI CCDG 6 cut(s) 123, 154, 241, 252, 264, 302
LweI GCATC 1 cut(s) 171
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 143, 220
MalI GATC 2 cut(s) 38, 201
MboI GATC 2 cut(s) 36, 199
MboII GAAGA 8 cut(s) 13, 61, 136, 139, 169, 184, 323, 338
MfeI CAATTG 1 cut(s) 51
MhlI GDGCHC 2 cut(s) 69, 101
MluCI AATT 1 cut(s) 51
MroI TCCGGA 1 cut(s) 250
MspA1I CMGCKG 1 cut(s) 318
MspI CCGG 2 cut(s) 239, 251
MunI CAATTG 1 cut(s) 51
MvnI CGCG 2 cut(s) 318, 479
NdeII GATC 2 cut(s) 36, 199
NlaIII CATG 2 cut(s) 196, 428
NlaIV GGNNCC 2 cut(s) 374, 375
NmuCI GTSAC 1 cut(s) 220
NspV TTCGAA 1 cut(s) 501
PagI TCATGA 1 cut(s) 424
PciSI GCTCTTC 1 cut(s) 74
PcsI WCGNNNNNNNCGW 4 cut(s) 69, 78, 84, 230
Ple19I CGATCG 1 cut(s) 39
PpuMI RGGWCCY 2 cut(s) 373, 441
Psp124BI GAGCTC 1 cut(s) 101
Psp5II RGGWCCY 2 cut(s) 373, 441
PspN4I GGNNCC 2 cut(s) 374, 375
PspPI GGNCC 3 cut(s) 258, 373, 441
PspPPI RGGWCCY 2 cut(s) 373, 441
PvuI CGATCG 1 cut(s) 39
RsaI GTAC 2 cut(s) 281, 389
RsaNI GTAC 2 cut(s) 280, 388
SacI GAGCTC 1 cut(s) 101
SacII CCGCGG 1 cut(s) 319
SapI GCTCTTC 1 cut(s) 74
Sau3AI GATC 2 cut(s) 36, 199
Sau96I GGNCC 3 cut(s) 258, 373, 441
ScaI AGTACT 1 cut(s) 389
SduI GDGCHC 2 cut(s) 69, 101
SetI ASST 6 cut(s) 32, 101, 156, 222, 227, 446
SfaNI GCATC 1 cut(s) 171
Sfr303I CCGCGG 1 cut(s) 319
SfuI TTCGAA 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 319
SinI GGWCC 3 cut(s) 258, 373, 441
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
Sse9I AATT 1 cut(s) 51
SsiI CCGC 4 cut(s) 316, 318, 360, 377
SspI AATATT 1 cut(s) 265
SstI GAGCTC 1 cut(s) 101
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 1 cut(s) 227
TaqI TCGA 6 cut(s) 8, 35, 72, 78, 104, 501
TasI AATT 1 cut(s) 51
TatI WGTACW 1 cut(s) 387
TseFI GTSAC 1 cut(s) 220
Tsp45I GTSAC 1 cut(s) 220
TspDTI ATGAA 3 cut(s) 324, 413, 441
VpaK11BI GGWCC 3 cut(s) 258, 373, 441
ZraI GACGTC 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.