pycom04g09300

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015654
Physical Location & Seq
Reverse (-)
11812987 .. 11813678
692 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g09300.2

Sequence Viewer

Length: 582 bp
ATGACAAATGTAACTTTTAGAAAGTCCAAGCTTGCTTCTTCATCAATGGCGTCGAGGAAGTCGTCCTTTTATGGAAAACTCAATTCCATTTTTCCAGCCTCGTCGATGGATGACAGCCCAGTTGGCCCAGATGGGCTGTTCGAATTTGACGAGGCGGATATCTGCAACTCATCATCCAGCACAGTTACTGAGTCCAAGAAGAGCACAATTCTCAGCCACGGTGAGCCGAAGAAAATGGGGAGGAAGATGATGGTGATGAACATGAGCATGGCGGAGAAGGGCGCCGCCGACAAGGTGATGTCATCGTCGCTGCCGGTGAACATTCCGGACTGGTCCAAGATTCTCAAAGACGGGTACAAAGAGCAGAGGAAGCTGGACAGTGATGAAAACTGCTGTGGAGAATTCTACAGTGACGATGAGGAGGACGACGGCGGAGATGGGAGGGTTCCGCCTCATGAGTACTTGGCGAGGACGAGAGGGGCTTCGTTTTCTGTCCATGAAGGGATTGGGAGGACTCTGAAAGGCAGGGACTTGAGGCGGGTGCGAAATGCAATTTGGAAAAAAGTTGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

194

Amino Acids

21.37

Weight (kDa)

6.84

Isoelectric Point (pI)

48.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
AcsI RAATTY 2 cut(s) 143, 401
AcyI GRCGYC 2 cut(s) 50, 282
AfaI GTAC 2 cut(s) 356, 461
AjuI GAANNNNNNNTTGG 2 cut(s) 538, 570
AluBI AGCT 2 cut(s) 31, 373
AluI AGCT 2 cut(s) 31, 373
Alw21I GWGCWC 1 cut(s) 206
AlwNI CAGNNNCTG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 1 cut(s) 124
ApeKI GCWGC 1 cut(s) 310
ApoI RAATTY 2 cut(s) 143, 401
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 2 cut(s) 125, 333
AsuHPI GGTGA 4 cut(s) 233, 265, 307, 328
AsuII TTCGAA 2 cut(s) 141, 573
AvaII GGWCC 1 cut(s) 333
BanI GGYRCC 1 cut(s) 281
Bbv12I GWGCWC 1 cut(s) 206
BbvI GCAGC 1 cut(s) 297
BccI CCATC 4 cut(s) 100, 125, 244, 431
BceAI ACGGC 1 cut(s) 445
BfmI CTRYAG 1 cut(s) 406
BfoI RGCGCY 1 cut(s) 285
BglI GCCNNNNNGGC 1 cut(s) 123
BisI GCNGC 2 cut(s) 285, 311
BlsI GCNGC 2 cut(s) 286, 312
BmcAI AGTACT 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 333
BmgT120I GGNCC 2 cut(s) 125, 333
BmiI GGNNCC 2 cut(s) 283, 447
BmrI ACTGGG 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 113
Bpu14I TTCGAA 2 cut(s) 141, 573
BpuEI CTTGAG 1 cut(s) 553
BsaHI GRCGYC 2 cut(s) 50, 282
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 1 cut(s) 325
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 2 cut(s) 119, 335
BseAI TCCGGA 1 cut(s) 325
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 2 cut(s) 115, 173
BseMII CTCAG 2 cut(s) 180, 226
BseNI ACTGG 2 cut(s) 119, 335
BseRI GAGGAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 297
BshFI GGCC 1 cut(s) 126
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 206
BsiSI CCGG 2 cut(s) 314, 326
BslFI GGGAC 1 cut(s) 542
BsmFI GGGAC 1 cut(s) 542
BsnI GGCC 1 cut(s) 126
Bsp119I TTCGAA 2 cut(s) 141, 573
Bsp1286I GDGCHC 1 cut(s) 206
Bsp13I TCCGGA 1 cut(s) 325
BspACI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 2 cut(s) 181, 225
BspEI TCCGGA 1 cut(s) 325
BspHI TCATGA 1 cut(s) 454
BspLI GGNNCC 2 cut(s) 283, 447
BspQI GCTCTTC 1 cut(s) 194
BspT104I TTCGAA 2 cut(s) 141, 573
BspT107I GGYRCC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 313
BsrI ACTGG 2 cut(s) 119, 335
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 1 cut(s) 217
BssNI GRCGYC 2 cut(s) 50, 282
Bst4CI ACNGT 4 cut(s) 184, 221, 380, 410
Bst6I CTCTTC 1 cut(s) 194
BstACI GRCGYC 2 cut(s) 50, 282
BstBI TTCGAA 2 cut(s) 141, 573
BstC8I GCNNGC 1 cut(s) 33
BstDEI CTNAG 2 cut(s) 189, 212
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 2 cut(s) 115, 173
BstH2I RGCGCY 1 cut(s) 285
BstHHI GCGC 1 cut(s) 284
BstMWI GCNNNNNNNGC 2 cut(s) 123, 370
BstSFI CTRYAG 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 297
BsuRI GGCC 1 cut(s) 126
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 2 cut(s) 115, 173
BtsIMutI CAGTG 2 cut(s) 385, 415
Cac8I GCNNGC 1 cut(s) 33
CaiI CAGNNNCTG 1 cut(s) 188
CciI TCATGA 1 cut(s) 454
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 125, 333
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 355, 460
CviAII CATG 4 cut(s) 262, 268, 455, 497
CviJI RGCY 9 cut(s) 31, 98, 117, 126, 136, 216, 226, 373, 482
CviKI_1 RGCY 9 cut(s) 31, 98, 117, 126, 136, 216, 226, 373, 482
CviQI GTAC 2 cut(s) 355, 460
DdeI CTNAG 2 cut(s) 189, 212
DinI GGCGCC 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 194
EciI GGCGGA 4 cut(s) 170, 287, 438, 447
Eco32I GATATC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 333
EcoRI GAATTC 1 cut(s) 401
EcoRV GATATC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 283
EheI GGCGCC 1 cut(s) 283
FaeI CATG 4 cut(s) 265, 271, 458, 500
FaiI YATR 5 cut(s) 72, 263, 269, 456, 498
FalI AAGNNNNNCTT 2 cut(s) 50, 82
FaqI GGGAC 1 cut(s) 542
FatI CATG 4 cut(s) 261, 267, 454, 496
FauI CCCGC 1 cut(s) 531
Fnu4HI GCNGC 2 cut(s) 285, 311
FokI GGATG 2 cut(s) 122, 160
Fsp4HI GCNGC 2 cut(s) 285, 311
GlaI GCGC 1 cut(s) 283
GluI GCNGC 2 cut(s) 285, 311
HaeII RGCGCY 1 cut(s) 285
HaeIII GGCC 1 cut(s) 126
HapII CCGG 2 cut(s) 314, 326
HgaI GACGC 1 cut(s) 39
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 2 cut(s) 50, 282
Hin1II CATG 4 cut(s) 265, 271, 458, 500
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HindIII AAGCTT 1 cut(s) 29
HinfI GANTC 3 cut(s) 191, 340, 514
HpaII CCGG 2 cut(s) 314, 326
HphI GGTGA 4 cut(s) 233, 265, 307, 328
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 519
Hpy188III TCNNGA 2 cut(s) 326, 455
Hpy8I GTNNAC 1 cut(s) 319
Hpy99I CGWCG 4 cut(s) 55, 106, 310, 431
HpyAV CCTTC 2 cut(s) 271, 494
HpyCH4III ACNGT 4 cut(s) 184, 221, 380, 410
HpyCH4V TGCA 2 cut(s) 165, 551
HpyF10VI GCNNNNNNNGC 2 cut(s) 123, 370
HpyF3I CTNAG 2 cut(s) 189, 212
Hsp92I GRCGYC 2 cut(s) 50, 282
Hsp92II CATG 4 cut(s) 265, 271, 458, 500
HspAI GCGC 1 cut(s) 282
KasI GGCGCC 1 cut(s) 281
Kpn2I TCCGGA 1 cut(s) 325
LguI GCTCTTC 1 cut(s) 194
LpnPI CCDG 9 cut(s) 108, 132, 141, 190, 316, 327, 339, 359, 511
Lsp1109I GCAGC 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 10, 184, 410
MboII GAAGA 4 cut(s) 30, 211, 241, 256
MhlI GDGCHC 1 cut(s) 206
MluCI AATT 5 cut(s) 82, 143, 207, 401, 552
Mly113I GGCGCC 1 cut(s) 282
MlyI GAGTC 2 cut(s) 200, 508
MroI TCCGGA 1 cut(s) 325
MslI CAYNNNNRTG 1 cut(s) 266
MspI CCGG 2 cut(s) 314, 326
MwoI GCNNNNNNNGC 2 cut(s) 123, 370
NarI GGCGCC 1 cut(s) 282
NlaIII CATG 4 cut(s) 265, 271, 458, 500
NlaIV GGNNCC 2 cut(s) 283, 447
NmuCI GTSAC 1 cut(s) 410
NspV TTCGAA 2 cut(s) 141, 573
PagI TCATGA 1 cut(s) 454
PciSI GCTCTTC 1 cut(s) 194
PcsI WCGNNNNNNNCGW 2 cut(s) 59, 147
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 2 cut(s) 286, 312
PleI GAGTC 2 cut(s) 199, 508
PluTI GGCGCC 1 cut(s) 285
PpsI GAGTC 2 cut(s) 199, 508
PspN4I GGNNCC 2 cut(s) 283, 447
PspPI GGNCC 2 cut(s) 125, 333
PstNI CAGNNNCTG 1 cut(s) 188
RsaI GTAC 2 cut(s) 356, 461
RsaNI GTAC 2 cut(s) 355, 460
RseI CAYNNNNRTG 1 cut(s) 266
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 2 cut(s) 285, 311
Sau96I GGNCC 2 cut(s) 125, 333
ScaI AGTACT 1 cut(s) 461
SchI GAGTC 2 cut(s) 200, 508
SduI GDGCHC 1 cut(s) 206
SetI ASST 3 cut(s) 33, 297, 375
SfcI CTRYAG 1 cut(s) 406
SfoI GGCGCC 1 cut(s) 283
SfuI TTCGAA 2 cut(s) 141, 573
SinI GGWCC 1 cut(s) 333
SmiMI CAYNNNNRTG 1 cut(s) 266
SmlI CTYRAG 1 cut(s) 532
SmoI CTYRAG 1 cut(s) 532
Sse9I AATT 5 cut(s) 82, 143, 207, 401, 552
SsiI CCGC 6 cut(s) 155, 272, 285, 432, 449, 538
SspDI GGCGCC 1 cut(s) 281
TaaI ACNGT 4 cut(s) 184, 221, 380, 410
TaqI TCGA 4 cut(s) 53, 104, 141, 573
TasI AATT 5 cut(s) 82, 143, 207, 401, 552
TatI WGTACW 1 cut(s) 459
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 340
TscAI CASTG 2 cut(s) 385, 415
TseFI GTSAC 1 cut(s) 410
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 410
TspDTI ATGAA 4 cut(s) 30, 272, 399, 513
TspRI CASTG 2 cut(s) 385, 415
VpaK11BI GGWCC 1 cut(s) 333
XapI RAATTY 2 cut(s) 143, 401
XcmI CCANNNNNNNNNTGG 1 cut(s) 503
ZrmI AGTACT 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.