MD12G1118800.v1.1

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015654
Physical Location & Seq
Reverse (-)
19040396 .. 19040935
540 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1118800.v1.1.491

Sequence Viewer

Length: 540 bp
ATGGCGTCGAGGAAGTCCTCCTTTTATGGAAAACCCAGTTCCATTTTTCCAGCCCCGTCGACGGACGACAGCCCAATTGGCTCGGATGGGCTATTCGAGTTCGACGAGGCGGATATCGGGAACTCGTCATCCAGCCCAGTTGCAGAGTCCAAGAAGAGCTCAGTTCCCAGCCGCAGAGAGCCGAAGAAAATGGGGAGGAAGATGATGGTGATGAGCATGAGCGTGGCGGAGATGGGTGGCGCCGCCAAGGTGGTGACGTCATCATCGTTGCCGGTGAACATTCCGGACTGGTCCGAGATTCTCAAGGAGGGTTACAAAGAGCAGAGGACGCTGGAAAGTGGTGAAGACGGCGGTGGGGATTTCTACGGTGCCGACGACGACAACGACAGCGGGTATGGGAGGGTCCCACCTCACGAGTACTTGGCGAGGATGAGAGGGGCTTCGTTTTCTGTTCACGAAGGGATTGGGAGGACTCTGAAAGGCAGAGATTTGAGGAGGGTGAGAAACGCAATTTGGGAAAAAGTTGGGTTCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

180

Amino Acids

19.47

Weight (kDa)

5.54

Isoelectric Point (pI)

64.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 43 - 179 2.7e-35 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 239, 368
AccI GTMKAC 1 cut(s) 59
AccIII TCCGGA 1 cut(s) 283
AciI CCGC 6 cut(s) 110, 172, 227, 243, 351, 390
AcyI GRCGYC 3 cut(s) 5, 240, 257
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 2 cut(s) 496, 528
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 159
AluI AGCT 1 cut(s) 159
Alw21I GWGCWC 1 cut(s) 161
Aor13HI TCCGGA 1 cut(s) 283
AspLEI GCGC 1 cut(s) 242
AspS9I GGNCC 2 cut(s) 291, 403
AsuHPI GGTGA 5 cut(s) 220, 265, 286, 353, 511
AsuII TTCGAA 1 cut(s) 531
AvaII GGWCC 2 cut(s) 291, 403
BanI GGYRCC 2 cut(s) 239, 368
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 413
BbsI GAAGAC 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 161
BccI CCATC 3 cut(s) 80, 199, 226
BceAI ACGGC 1 cut(s) 364
BfoI RGCGCY 1 cut(s) 243
BglI GCCNNNNNGGC 1 cut(s) 78
BisI GCNGC 2 cut(s) 172, 243
BlsI GCNGC 2 cut(s) 173, 244
BmcAI AGTACT 1 cut(s) 419
Bme18I GGWCC 2 cut(s) 291, 403
BmgT120I GGNCC 2 cut(s) 291, 403
BmiI GGNNCC 4 cut(s) 241, 370, 404, 405
BmrI ACTGGG 2 cut(s) 30, 131
BmuI ACTGGG 2 cut(s) 30, 131
BpiI GAAGAC 1 cut(s) 351
Bpu14I TTCGAA 1 cut(s) 531
BpuEI CTTGAG 1 cut(s) 287
BsaHI GRCGYC 3 cut(s) 5, 240, 257
BsaJI CCNNGG 1 cut(s) 246
BsaWI WCCGGW 1 cut(s) 283
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 3 cut(s) 36, 137, 293
BseAI TCCGGA 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 3 cut(s) 91, 128, 435
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMII CTCAG 1 cut(s) 174
BseNI ACTGG 3 cut(s) 36, 137, 293
BseRI GAGGAG 1 cut(s) 508
BseYI CCCAGC 1 cut(s) 167
BshNI GGYRCC 2 cut(s) 239, 368
BsiHKAI GWGCWC 1 cut(s) 161
BsiSI CCGG 2 cut(s) 272, 284
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 1 cut(s) 61
BsmFI GGGAC 1 cut(s) 389
Bsp119I TTCGAA 1 cut(s) 531
Bsp1286I GDGCHC 1 cut(s) 161
Bsp13I TCCGGA 1 cut(s) 283
BspACI CCGC 6 cut(s) 110, 172, 227, 243, 351, 390
BspCNI CTCAG 1 cut(s) 173
BspEI TCCGGA 1 cut(s) 283
BspLI GGNNCC 4 cut(s) 241, 370, 404, 405
BspQI GCTCTTC 1 cut(s) 149
BspT104I TTCGAA 1 cut(s) 531
BspT107I GGYRCC 2 cut(s) 239, 368
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 3 cut(s) 36, 137, 293
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 1 cut(s) 246
BssNI GRCGYC 3 cut(s) 5, 240, 257
BssSI CACGAG 1 cut(s) 413
BssT1I CCWWGG 1 cut(s) 246
Bst2BI CACGAG 1 cut(s) 413
Bst4CI ACNGT 1 cut(s) 368
Bst6I CTCTTC 1 cut(s) 149
BstACI GRCGYC 3 cut(s) 5, 240, 257
BstBI TTCGAA 1 cut(s) 531
BstDEI CTNAG 1 cut(s) 160
BstF5I GGATG 3 cut(s) 91, 128, 435
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstMWI GCNNNNNNNGC 2 cut(s) 78, 328
BstV2I GAAGAC 1 cut(s) 351
BtsCI GGATG 3 cut(s) 91, 128, 435
CfoI GCGC 1 cut(s) 242
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 2 cut(s) 291, 403
CseI GACGC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 418
CviAII CATG 1 cut(s) 217
CviJI RGCY 9 cut(s) 53, 72, 81, 91, 135, 159, 171, 181, 440
CviKI_1 RGCY 9 cut(s) 53, 72, 81, 91, 135, 159, 171, 181, 440
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 1 cut(s) 160
DinI GGCGCC 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 149
EarI CTCTTC 1 cut(s) 149
EciI GGCGGA 2 cut(s) 125, 242
Ecl136II GAGCTC 1 cut(s) 159
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 161
Eco32I GATATC 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 291, 403
Eco53kI GAGCTC 1 cut(s) 159
EcoICRI GAGCTC 1 cut(s) 159
EcoO109I RGGNCCY 1 cut(s) 403
EcoRV GATATC 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 161
EgeI GGCGCC 1 cut(s) 241
EheI GGCGCC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 1 cut(s) 220
FaiI YATR 3 cut(s) 27, 218, 396
FalI AAGNNNNNCTT 1 cut(s) 37
FaqI GGGAC 1 cut(s) 389
FatI CATG 1 cut(s) 216
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 172, 243
FokI GGATG 3 cut(s) 98, 115, 442
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 2 cut(s) 172, 243
GlaI GCGC 1 cut(s) 241
GluI GCNGC 2 cut(s) 172, 243
GsaI CCCAGC 1 cut(s) 171
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 2 cut(s) 272, 284
HgaI GACGC 1 cut(s) 337
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 3 cut(s) 5, 240, 257
Hin1II CATG 1 cut(s) 220
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HinfI GANTC 3 cut(s) 146, 298, 472
HpaII CCGG 2 cut(s) 272, 284
HphI GGTGA 5 cut(s) 220, 265, 286, 353, 511
Hpy166II GTNNAC 3 cut(s) 60, 277, 454
Hpy188I TCNGA 3 cut(s) 85, 295, 477
Hpy188III TCNNGA 4 cut(s) 118, 284, 413, 455
Hpy8I GTNNAC 3 cut(s) 60, 277, 454
Hpy99I CGWCG 6 cut(s) 10, 61, 64, 107, 377, 380
HpyAV CCTTC 1 cut(s) 452
HpyCH4III ACNGT 1 cut(s) 368
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 328
HpyF3I CTNAG 1 cut(s) 160
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 3 cut(s) 5, 240, 257
Hsp92II CATG 1 cut(s) 220
HspAI GCGC 1 cut(s) 240
KasI GGCGCC 1 cut(s) 239
KflI GGGWCCC 1 cut(s) 403
Kpn2I TCCGGA 1 cut(s) 283
LguI GCTCTTC 1 cut(s) 149
LpnPI CCDG 9 cut(s) 49, 63, 145, 150, 181, 274, 285, 297, 317
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 253, 311
MboII GAAGA 4 cut(s) 166, 196, 211, 356
MfeI CAATTG 1 cut(s) 75
MhlI GDGCHC 1 cut(s) 161
MluCI AATT 2 cut(s) 75, 510
Mly113I GGCGCC 1 cut(s) 240
MlyI GAGTC 2 cut(s) 155, 466
MroI TCCGGA 1 cut(s) 283
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 390
MspI CCGG 2 cut(s) 272, 284
MunI CAATTG 1 cut(s) 75
MwoI GCNNNNNNNGC 2 cut(s) 78, 328
NarI GGCGCC 1 cut(s) 240
NlaIII CATG 1 cut(s) 220
NlaIV GGNNCC 4 cut(s) 241, 370, 404, 405
NmuCI GTSAC 1 cut(s) 253
NspV TTCGAA 1 cut(s) 531
PciSI GCTCTTC 1 cut(s) 149
PcsI WCGNNNNNNNCGW 4 cut(s) 102, 263, 372, 381
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 173, 244
PleI GAGTC 2 cut(s) 154, 466
PluTI GGCGCC 1 cut(s) 243
PpsI GAGTC 2 cut(s) 154, 466
PpuMI RGGWCCY 1 cut(s) 403
Psp124BI GAGCTC 1 cut(s) 161
Psp5II RGGWCCY 1 cut(s) 403
PspFI CCCAGC 1 cut(s) 167
PspN4I GGNNCC 4 cut(s) 241, 370, 404, 405
PspPI GGNCC 2 cut(s) 291, 403
PspPPI RGGWCCY 1 cut(s) 403
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 221
SacI GAGCTC 1 cut(s) 161
SalI GTCGAC 1 cut(s) 58
SapI GCTCTTC 1 cut(s) 149
SatI GCNGC 2 cut(s) 172, 243
Sau96I GGNCC 2 cut(s) 291, 403
ScaI AGTACT 1 cut(s) 419
SchI GAGTC 2 cut(s) 155, 466
SduI GDGCHC 1 cut(s) 161
SetI ASST 4 cut(s) 161, 252, 260, 412
SfoI GGCGCC 1 cut(s) 241
SfuI TTCGAA 1 cut(s) 531
SgrDI CGTCGACG 1 cut(s) 58
SinI GGWCC 2 cut(s) 291, 403
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 2 cut(s) 75, 510
SsiI CCGC 6 cut(s) 110, 172, 227, 243, 351, 390
SspDI GGCGCC 1 cut(s) 239
SstI GAGCTC 1 cut(s) 161
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 368
TaiI ACGT 1 cut(s) 260
TaqI TCGA 5 cut(s) 8, 59, 96, 102, 531
TasI AATT 2 cut(s) 75, 510
TatI WGTACW 1 cut(s) 417
TauI GCSGC 2 cut(s) 174, 245
TfiI GAWTC 1 cut(s) 298
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspGWI ACGGA 1 cut(s) 77
VpaK11BI GGWCC 2 cut(s) 291, 403
XmiI GTMKAC 1 cut(s) 59
ZraI GACGTC 1 cut(s) 258
ZrmI AGTACT 1 cut(s) 419
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.