Rh3DG199700

Senescence regulator

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0015654
Physical Location & Seq
Reverse (-)
18111222 .. 18112598
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG199700.1

Sequence Viewer

Length: 489 bp
ATGGCGTCTAGGATGACCAGCTTCCAGTCCAAACCCAACTACCTGTTCCCGACTCACAACCCGATTCGCAACTCCGACGGAGTCTTCGAGTTCGACGAGGCCGAGTTGTGGGTCAATCCATCCAACGGTTCAAACCAGCCGGCCGAGTCCAAGAAGATGACGTCCACCATACCCAGAGAAACGAGGAGGAAGACGATGGCTGATCAGAAAGGCACTGACACCGTGACATCAGCGTCGTTGCCGGTCAACATTCCGGACTGGTCAAATATTCTGAAAGAACAGAGGAAACAGAGAGACGGGAGCGATGAAGATGTGGATAATGACTACGAGAATGGTGACGAAGTCGAGAGGGTTCCGCCTCATGAGTACTTGGCCAGGAACAGAGGGGCTTCGTTTTCTGTGCACGAAGGGATTGGGAGGACTTTGAAGGGGAGAGACTTGAGGCGCGTGAGGAATGCGATTTGGAAGCAGGTCGGGTTTGAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Senescence_reg

Protein Analysis

162

Amino Acids

18.5

Weight (kDa)

5.97

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Senescence_reg PF04520 44 - 162 8.3e-39 Senescence regulator
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g15900
malus_domestica MD04G1097800.v1.1 MD12G1118800.v1.1
prunus_persica Prupe.6G236700_v2.0.a1
pyrus_communis pycom04g09300 pycom12g11740
rosa_chinensis RchiOBHm_Chr3g0469591
rosa_laevigata RLG00000024334
rosa_multiflora Rmu_sc0006483.1_g000007
rosa_roxburghii Rroxscaffold_6G00411740
rosa_rugosa Rorug03G0102800
rosa_samantha Rh3AG152100 Rh3BG175800 Rh3CG166800 Rh3DG199700
rosa_wichuraiana Rw3G014340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AatII GACGTC 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 460
AccII CGCG 1 cut(s) 447
AccIII TCCGGA 1 cut(s) 253
AciI CCGC 1 cut(s) 356
AcoI YGGCCR 2 cut(s) 141, 372
AcyI GRCGYC 2 cut(s) 5, 161
AfaI GTAC 1 cut(s) 368
AfiI CCNNNNNNNGG 2 cut(s) 108, 125
AgsI TTSAA 3 cut(s) 132, 427, 482
AjnI CCWGG 1 cut(s) 374
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
AluBI AGCT 1 cut(s) 21
AluI AGCT 1 cut(s) 21
Alw21I GWGCWC 1 cut(s) 405
Alw26I GTCTC 2 cut(s) 288, 429
Alw44I GTGCAC 1 cut(s) 401
Aor13HI TCCGGA 1 cut(s) 253
AoxI GGCC 3 cut(s) 99, 141, 372
ApaLI GTGCAC 1 cut(s) 401
ArsI GACNNNNNNTTYG 2 cut(s) 68, 100
AspLEI GCGC 1 cut(s) 447
AsuHPI GGTGA 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 405
BalI TGGCCA 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 76, 197
Bbv12I GWGCWC 1 cut(s) 405
BccI CCATC 2 cut(s) 127, 190
BciT130I CCWGG 1 cut(s) 376
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 288, 429
BfaI CTAG 1 cut(s) 9
BfuAI ACCTGC 1 cut(s) 460
BmcAI AGTACT 1 cut(s) 368
Bme1390I CCNGG 1 cut(s) 376
BmiI GGNNCC 1 cut(s) 354
BmrFI CCNGG 1 cut(s) 376
BpiI GAAGAC 2 cut(s) 76, 197
BpuEI CTTGAG 1 cut(s) 460
BsaHI GRCGYC 2 cut(s) 5, 161
BsaWI WCCGGW 1 cut(s) 253
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 125
Bse118I RCCGGY 2 cut(s) 139, 241
Bse1I ACTGG 2 cut(s) 25, 263
BseAI TCCGGA 1 cut(s) 253
BseBI CCWGG 1 cut(s) 376
BseGI GGATG 2 cut(s) 18, 119
BseLI CCNNNNNNNGG 2 cut(s) 108, 125
BseNI ACTGG 2 cut(s) 25, 263
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 405
BseX3I CGGCCG 1 cut(s) 141
Bsh1236I CGCG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 3 cut(s) 101, 143, 374
BsiEI CGRYCG 1 cut(s) 144
BsiHKAI GWGCWC 1 cut(s) 405
BsiSI CCGG 3 cut(s) 140, 242, 254
BslI CCNNNNNNNGG 2 cut(s) 108, 125
BsmAI GTCTC 2 cut(s) 288, 429
BsmBI CGTCTC 1 cut(s) 288
BsmI GAATGC 1 cut(s) 460
BsnI GGCC 3 cut(s) 101, 143, 374
Bsp1286I GDGCHC 1 cut(s) 405
Bsp13I TCCGGA 1 cut(s) 253
Bsp143I GATC 1 cut(s) 202
BspACI CCGC 1 cut(s) 356
BspANI GGCC 3 cut(s) 101, 143, 374
BspEI TCCGGA 1 cut(s) 253
BspFNI CGCG 1 cut(s) 447
BspHI TCATGA 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 460
BsrFI RCCGGY 2 cut(s) 139, 241
BsrI ACTGG 2 cut(s) 25, 263
BssAI RCCGGY 2 cut(s) 139, 241
BssMI GATC 1 cut(s) 202
BssNI GRCGYC 2 cut(s) 5, 161
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 2 cut(s) 128, 223
BstACI GRCGYC 2 cut(s) 5, 161
BstC8I GCNNGC 1 cut(s) 141
BstF5I GGATG 2 cut(s) 18, 119
BstFNI CGCG 1 cut(s) 447
BstHHI GCGC 1 cut(s) 447
BstKTI GATC 1 cut(s) 205
BstMAI GTCTC 2 cut(s) 288, 429
BstMBI GATC 1 cut(s) 202
BstMCI CGRYCG 1 cut(s) 144
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 374
BstSLI GKGCMC 1 cut(s) 405
BstUI CGCG 1 cut(s) 447
BstV2I GAAGAC 2 cut(s) 76, 197
BstZI CGGCCG 1 cut(s) 141
BsuRI GGCC 3 cut(s) 101, 143, 374
BtgZI GCGATG 1 cut(s) 318
BtsCI GGATG 2 cut(s) 18, 119
BtsIMutI CAGTG 1 cut(s) 213
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 141
CciI TCATGA 1 cut(s) 361
CfoI GCGC 1 cut(s) 447
Cfr10I RCCGGY 2 cut(s) 139, 241
CseI GACGC 1 cut(s) 222
Csp6I GTAC 1 cut(s) 367
CviAII CATG 1 cut(s) 362
CviJI RGCY 7 cut(s) 21, 101, 139, 143, 200, 374, 389
CviKI_1 RGCY 7 cut(s) 21, 101, 139, 143, 200, 374, 389
CviQI GTAC 1 cut(s) 367
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 141, 372
EagI CGGCCG 1 cut(s) 141
EciI GGCGGA 1 cut(s) 345
EclXI CGGCCG 1 cut(s) 141
Eco52I CGGCCG 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 374
Esp3I CGTCTC 1 cut(s) 288
FaeI CATG 1 cut(s) 365
FaiI YATR 2 cut(s) 170, 363
FatI CATG 1 cut(s) 361
FbaI TGATCA 1 cut(s) 202
FokI GGATG 2 cut(s) 25, 106
FspBI CTAG 1 cut(s) 9
GlaI GCGC 1 cut(s) 446
HaeIII GGCC 3 cut(s) 101, 143, 374
HapII CCGG 3 cut(s) 140, 242, 254
HgaI GACGC 1 cut(s) 222
HhaI GCGC 1 cut(s) 447
Hin1I GRCGYC 2 cut(s) 5, 161
Hin1II CATG 1 cut(s) 365
Hin6I GCGC 1 cut(s) 445
HinP1I GCGC 1 cut(s) 445
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HinfI GANTC 4 cut(s) 52, 64, 81, 146
HpaII CCGG 3 cut(s) 140, 242, 254
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 3 cut(s) 165, 247, 403
Hpy188I TCNGA 3 cut(s) 76, 207, 273
Hpy188III TCNNGA 4 cut(s) 49, 254, 346, 362
Hpy8I GTNNAC 3 cut(s) 165, 247, 403
Hpy99I CGWCG 3 cut(s) 80, 98, 238
HpyAV CCTTC 2 cut(s) 401, 421
HpyCH4III ACNGT 2 cut(s) 128, 223
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 1 cut(s) 403
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 2 cut(s) 5, 161
Hsp92II CATG 1 cut(s) 365
HspAI GCGC 1 cut(s) 445
Kpn2I TCCGGA 1 cut(s) 253
KroI GCCGGC 1 cut(s) 139
KroNI GCCGGC 1 cut(s) 141
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 1 cut(s) 202
LmnI GCTCC 1 cut(s) 300
MaeI CTAG 1 cut(s) 9
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 223, 335
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 4 cut(s) 76, 166, 202, 320
MhlI GDGCHC 1 cut(s) 405
MlsI TGGCCA 1 cut(s) 374
MluNI TGGCCA 1 cut(s) 374
MlyI GAGTC 3 cut(s) 46, 90, 155
MmeI TCCRAC 2 cut(s) 99, 147
Mox20I TGGCCA 1 cut(s) 374
MroI TCCGGA 1 cut(s) 253
MroNI GCCGGC 1 cut(s) 139
MscI TGGCCA 1 cut(s) 374
Msp20I TGGCCA 1 cut(s) 374
MspI CCGG 3 cut(s) 140, 242, 254
MspR9I CCNGG 1 cut(s) 376
Mva1269I GAATGC 1 cut(s) 460
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 447
NaeI GCCGGC 1 cut(s) 141
NdeII GATC 1 cut(s) 202
NgoMIV GCCGGC 1 cut(s) 139
NlaIII CATG 1 cut(s) 365
NlaIV GGNNCC 1 cut(s) 354
NmeAIII GCCGAG 2 cut(s) 127, 169
NmuCI GTSAC 2 cut(s) 223, 335
PagI TCATGA 1 cut(s) 361
PcsI WCGNNNNNNNCGW 3 cut(s) 84, 93, 99
PctI GAATGC 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 64
PflFI GACNNNGTC 2 cut(s) 80, 341
PleI GAGTC 3 cut(s) 46, 89, 154
PpsI GAGTC 3 cut(s) 46, 89, 154
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 1 cut(s) 354
PsyI GACNNNGTC 2 cut(s) 80, 341
RsaI GTAC 1 cut(s) 368
RsaNI GTAC 1 cut(s) 367
Sau3AI GATC 1 cut(s) 202
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 3 cut(s) 46, 90, 155
ScrFI CCNGG 1 cut(s) 376
SduI GDGCHC 1 cut(s) 405
SetI ASST 4 cut(s) 23, 45, 164, 474
SmlI CTYRAG 1 cut(s) 439
SmoI CTYRAG 1 cut(s) 439
SsiI CCGC 1 cut(s) 356
SspI AATATT 1 cut(s) 268
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 374
TaaI ACNGT 2 cut(s) 128, 223
TaiI ACGT 1 cut(s) 164
TaqI TCGA 3 cut(s) 87, 93, 345
TatI WGTACW 1 cut(s) 366
TfiI GAWTC 1 cut(s) 64
TscAI CASTG 1 cut(s) 220
TseFI GTSAC 2 cut(s) 223, 335
Tsp45I GTSAC 2 cut(s) 223, 335
TspDTI ATGAA 1 cut(s) 321
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 220
Tth111I GACNNNGTC 2 cut(s) 80, 341
VneI GTGCAC 1 cut(s) 401
XspI CTAG 1 cut(s) 9
ZraI GACGTC 1 cut(s) 162
ZrmI AGTACT 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.