FvH4_6g16860

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015655
Physical Location & Seq
Forward (+)
10750254 .. 10753485
3232 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g16860.t1

Sequence Viewer

Length: 2595 bp
ATGGACATACGCATACCCATCACTCTAAGCCTCCAAAACCCACCTCAACACTTCCGCACCAAAAACCCAACACCAAAAGACTTCAATTCACTCATCAAGCAACACGCCAACCTCAAAAACGACCATGCAATCCTCTCAACCTATGCCCACATGGAGTCTCTGTCCCTCTCTCCCAACACCTCCTCCCTCCCTCTCGTCCTCAAAGCCTGCGCGCGCCTCGGCGCAGTCGAGAGAGGGAGGAGCATCCATTCTCTTATTCGGAACTCGGGTTTCAACACAGATGTAAGAGTTGGGACTGCTCTTGTTGACTTCTACTGCAAATGTGGGCTCATTGAGGATGCAGTTAAGGTGTTTGATGAAATGCGTGAGAGGGATTTGGTTGTGTGGAATGCTTTGATTCATGGGTGTGTTGGGTGTGGGTGTTTTGAGGAGGGGGTGGAGTTGTTTAGGGAGATGCAGGGTGAGGGGTTGAAGCCGAATTCGCGCACCGTGGTGGCGGTGCTTTTGGCTTGTAGGGAGGTTTCGGGGTTGGGGGCAGGGAAGGAGGTGCATTGTTTTGGTTTGAGGAATGGGTTGCTTGAGGGGGATGCTCATGTGGGGACTGCTTTGATTGGGTTTTATGTGGGATTTGATGTTGGAATGGCGCGGCTTGTGTTTGATGAGATGGTTGTGAGGAATGTTGTTAATGTTGTTAGTTTGAATGCGATGATTACAGGGTATGTTGATGCTGGGGAGTACTTGGTGCCATTGGAGCTTTTCGTTCAGTTGCTTGAGGAGGGGGTTAGGTTTGATTCTGTTACTATGTTGGTTGTGATTCAAGCTTGTGGGAAGATTGGTAATGTTGAATTGGCCGGGCAGATTCATCAAATGGCTGTGAAGTGCGGCTACATCAGTGATATTTTTGTAGTAAATGCGTTGCTGAATATGTATAGTGAGTGTGGATGTTTTGAGTTATCGCGTGCATTGTTTGAAACTGTCTCAAACCGTGATGTAGCTATGTGGAATTCCATGCTGGCTGCATACAGTGAATATGGTTTATATGATGAAGCCGTGAGTTTATTTTCTAGAATGAGAAGAGAAGGATGCGTGGAAGATGAGAGAACTGTTTATATAATGTTATCTTTGTGTGAAGAATTATCTGAAGGCTTGAGGGAGGGCAAAGGCTTGCATGCTCTTGCGCGCAAGAGTGGGATGGAAATCAATGTTTCTTTGGGAAATACATTGTTAAGTATGTATGCTGAATTTAACTGTGTCGAGTCTGTTCAGAAGGTTTTTGCTGAGATGAAAGGTTTAGATGTTATCTCATGGAACACTCTGATCAGGGCATTGGCCTGCAATGGCTTGCGAGATGAAGCATGGGAAACATTTGGTGTAATGCGAGAATCTGGAACCAAGCCTAACTCGCACACCGTCATATCTGCCCTTGCCAGTTTTGAAGATGAAACTTGTGTAAATACAGTGCGAGCAATCCATGGTTTTGTAATGAAACATGGTATTGAAGTAGACCCATCTTTGAACACTGCACTAACAGATATATACATGAATAGTGGTGATGAAGCAGCAGCTAGGACTCTGTTTGAGGACTGCCCCCATAGGGATGTGATCTCATGGAATGCTATAATTGCCAGTTACGTCAGAAACAATGAGAGCAACGAAGCTCTGTTACTTTTCAACCGTATGATTTCAGAAGTGAAACCCAACTCTGTCACGATCATAAGTATACTCTCATCATGTACCCAAGTTGCATCTCTGCCTCTAGGTCAATGCTTGCATGCTTATGCAACAAGGAGGCACTTCTCATTTGACTTTGATTTGTCTCTTGCAAATGCTTTTATATCTATGTATGCTAGAAGCGGTAGTATGCAATATGCTAAAAGGATCTTTAAGAGTTTACCGACGAGAAATATTATCTCATGGAATGCGTTGATAACTGGCTACAGCATGCACGGTCATGGATATGATGCTATTCTTATGTTCCAACAAATGTTAGAGGATGGTTTCCAACCAAATGGTTCTACTTTTGTAGCTGTTCTATCTGCTTGCAGGCATTCTGGTCTGATAGAGATGGGATTGAAGCTTTTCCACACTATGGTATATGATCTGGAGATAACACCCAAGCTTGTTCACTATGGTTGTGTCGTTGACCTTCTTTGTCGTGCAGGCCGCTTAGATGAAGCTAGAGAGTTCATTGAGTCAATGCCTATAGAACCAGATGCATCAGTGTGGAGGGCTTTGCTCAATGGTTGTCGAGTTAATTCTGCAGTTAAGTTAGCTGGAGAAATTTTTAAGAAACTGGTGGAATTAGAACCCATGAATGCAGGGAATTATGTCCTGCTATCTAATATATATGCTGCAGCAGGTCTGTGGTTAGAGGTCAGAAAGATAAGAACATTGCTGAGGGAAAAGGGTTTGAAAAAGCCTCCAGGAACAAGTTGGACTGTTATTAAAAGTCAGGTCCACTCTTTTGTTGCCTCAGACACATCACACCTTGATTCAAACAGAATTTATGCTTGTTTAAATTCTCTGTCAGCCTTAACCAAAGAAATTGGTTATATTCCTGATCTACAATGGGTTTTGCTTGAAGAAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

865

Amino Acids

95.82

Weight (kDa)

5.66

Isoelectric Point (pI)

33.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 99 - 125 6.7e-06 PPR repeat
PPR_1 PF12854 99 - 122 6.2e-06 PPR repeat
PPR_2 PF13041 125 - 168 3.4e-09 PPR repeat family
PPR PF01535 127 - 157 2.2e-07 PPR repeat
PPR_2 PF13041 330 - 376 1.2e-08 PPR repeat family
PPR PF01535 333 - 362 8.2e-08 PPR repeat
PPR_2 PF13041 432 - 471 2e-08 PPR repeat family
PPR_2 PF13041 532 - 578 3.4e-08 PPR repeat family
PPR_2 PF13041 634 - 681 5.2e-09 PPR repeat family
PPR PF01535 637 - 667 9.2e-06 PPR repeat
PPR_1 PF12854 703 - 733 6.4e-06 PPR repeat
E_motif PF20431 755 - 812 3.9e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g16860
malus_domestica MD12G1106700.v1.1
prunus_persica Prupe.7G125600_v2.0.a1
pyrus_communis pycom12g10720
rosa_chinensis RchiOBHm_Chr3g0470881
rosa_laevigata RLG00000024237
rosa_multiflora Rmu_sc0013860.1_g000005
rosa_roxburghii Rroxscaffold_1G00027940 Rroxscaffold_4G00331780 Rroxscaffold_6G00410450
rosa_rugosa Rorug03G0113300
rosa_samantha Rh3AG163100 Rh3BG188500 Rh3CG178500 Rh3DG187600
rosa_wichuraiana Rw3G015360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 2348
AccB1I GGYRCC 1 cut(s) 742
AccB7I CCANNNNNTGG 1 cut(s) 2089
AccI GTMKAC 2 cut(s) 1503, 1720
AccII CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
AciI CCGC 6 cut(s) 55, 497, 646, 882, 1854, 2164
AclWI GGATC 1 cut(s) 1886
AcoI YGGCCR 1 cut(s) 849
AcsI RAATTY 6 cut(s) 478, 1003, 1241, 2280, 2502, 2518
AcuI CTGAAG 1 cut(s) 1161
AfaI GTAC 2 cut(s) 737, 1735
AfiI CCNNNNNNNGG 2 cut(s) 1594, 2089
AjnI CCWGG 1 cut(s) 2422
AleI CACNNNNGTG 1 cut(s) 491
Alw26I GTCTC 3 cut(s) 162, 982, 1821
AlwI GGATC 1 cut(s) 1886
Ama87I CYCGRG 1 cut(s) 265
AoxI GGCC 3 cut(s) 849, 1329, 2161
ApeKI GCWGC 5 cut(s) 1016, 1559, 1562, 2351, 2354
ApoI RAATTY 6 cut(s) 478, 1003, 1241, 2280, 2502, 2518
Asp700I GAANNNNTTC 1 cut(s) 2078
AspLEI GCGC 8 cut(s) 212, 214, 216, 224, 486, 646, 1180, 1182
AspS9I GGNCC 1 cut(s) 2455
AsuC2I CCSGG 1 cut(s) 853
AsuHPI GGTGA 2 cut(s) 473, 1562
AvaI CYCGRG 1 cut(s) 265
AvaII GGWCC 1 cut(s) 2455
BanI GGYRCC 1 cut(s) 742
BanII GRGCYC 1 cut(s) 330
BarI GAAGNNNNNNTAC 4 cut(s) 869, 901, 1647, 1679
BbvCI CCTCAGC 1 cut(s) 2396
BbvI GCAGC 5 cut(s) 1003, 1571, 1574, 2338, 2366
BccI CCATC 6 cut(s) 26, 658, 1186, 1516, 1988, 2059
BceAI ACGGC 1 cut(s) 1034
BciT130I CCWGG 1 cut(s) 2424
BclI TGATCA 1 cut(s) 1317
BcnI CCSGG 1 cut(s) 853
BcoDI GTCTC 3 cut(s) 162, 982, 1821
BfaI CTAG 5 cut(s) 1065, 1566, 1757, 1848, 2178
BfmI CTRYAG 4 cut(s) 1936, 2202, 2259, 2352
BfuAI ACCTGC 1 cut(s) 2348
BisI GCNGC 8 cut(s) 647, 883, 1017, 1560, 1563, 2164, 2352, 2355
BlsI GCNGC 8 cut(s) 648, 884, 1018, 1561, 1564, 2165, 2353, 2356
BmcAI AGTACT 1 cut(s) 737
Bme1390I CCNGG 2 cut(s) 853, 2424
Bme18I GGWCC 1 cut(s) 2455
BmeT110I CYCGRG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 2455
BmiI GGNNCC 2 cut(s) 744, 1390
BmrFI CCNGG 2 cut(s) 853, 2424
BpmI CTGGAG 3 cut(s) 2123, 2295, 2406
Bpu10I CCTNAGC 1 cut(s) 2396
BpuEI CTTGAG 3 cut(s) 599, 791, 1168
BpuMI CCSGG 1 cut(s) 853
BsaBI GATNNNNATC 1 cut(s) 1196
BsaJI CCNNGG 3 cut(s) 217, 489, 1471
BsaXI ACNNNNNCTCC 4 cut(s) 146, 167, 176, 197
Bsc4I CCNNNNNNNGG 2 cut(s) 1594, 2089
Bse1I ACTGG 4 cut(s) 1428, 1626, 1936, 2298
Bse3DI GCAATG 2 cut(s) 1342, 2390
Bse8I GATNNNNATC 1 cut(s) 1196
BseBI CCWGG 1 cut(s) 2424
BseDI CCNNGG 3 cut(s) 217, 489, 1471
BseGI GGATG 8 cut(s) 243, 343, 592, 947, 1088, 1197, 1603, 1999
BseJI GATNNNNATC 1 cut(s) 1196
BseLI CCNNNNNNNGG 2 cut(s) 1594, 2089
BseMI GCAATG 2 cut(s) 1342, 2390
BseMII CTCAG 3 cut(s) 1269, 2387, 2487
BseNI ACTGG 4 cut(s) 1428, 1626, 1936, 2298
BsePI GCGCGC 3 cut(s) 210, 212, 1178
BseRI GAGGAG 4 cut(s) 172, 253, 443, 788
BseXI GCAGC 5 cut(s) 1003, 1571, 1574, 2338, 2366
BseYI CCCAGC 1 cut(s) 728
BsgI GTGCAG 2 cut(s) 1506, 2178
Bsh1236I CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
BshFI GGCC 3 cut(s) 851, 1331, 2163
BshNI GGYRCC 1 cut(s) 742
BsiHKCI CYCGRG 1 cut(s) 265
BsiSI CCGG 1 cut(s) 852
BslFI GGGAC 3 cut(s) 148, 307, 613
BslI CCNNNNNNNGG 2 cut(s) 1594, 2089
BsmAI GTCTC 3 cut(s) 162, 982, 1821
BsmFI GGGAC 3 cut(s) 148, 307, 613
BsmI GAATGC 6 cut(s) 394, 706, 1618, 1924, 2047, 2320
BsnI GGCC 3 cut(s) 851, 1331, 2163
BsoBI CYCGRG 1 cut(s) 265
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
Bsp19I CCATGG 1 cut(s) 1471
BspACI CCGC 6 cut(s) 55, 497, 646, 882, 1854, 2164
BspANI GGCC 3 cut(s) 851, 1331, 2163
BspCNI CTCAG 3 cut(s) 1270, 2388, 2486
BspFNI CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
BspLI GGNNCC 2 cut(s) 744, 1390
BspMAI CTGCAG 2 cut(s) 2263, 2356
BspMI ACCTGC 1 cut(s) 2348
BspPI GGATC 1 cut(s) 1886
BspT107I GGYRCC 1 cut(s) 742
BsrDI GCAATG 2 cut(s) 1342, 2390
BsrI ACTGG 4 cut(s) 1428, 1626, 1936, 2298
BssECI CCNNGG 3 cut(s) 217, 489, 1471
BssHII GCGCGC 3 cut(s) 210, 212, 1178
BssMI GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
BssNAI GTATAC 1 cut(s) 1721
BssT1I CCWWGG 1 cut(s) 1471
Bst1107I GTATAC 1 cut(s) 1721
Bst2UI CCWGG 1 cut(s) 2424
Bst6I CTCTTC 1 cut(s) 1069
BstDEI CTNAG 5 cut(s) 26, 1278, 2167, 2396, 2473
BstDSI CCRYGG 2 cut(s) 489, 1471
BstF5I GGATG 8 cut(s) 243, 343, 592, 947, 1088, 1197, 1603, 1999
BstFNI CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
BstHHI GCGC 8 cut(s) 212, 214, 216, 224, 486, 646, 1180, 1182
BstKTI GATC 6 cut(s) 1320, 1605, 1713, 1881, 2101, 2563
BstMAI GTCTC 3 cut(s) 162, 982, 1821
BstMBI GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
BstMWI GCNNNNNNNGC 4 cut(s) 481, 751, 1402, 1622
BstNI CCWGG 1 cut(s) 2424
BstNSI RCATGY 3 cut(s) 1172, 1775, 1945
BstSCI CCNGG 2 cut(s) 851, 2422
BstSFI CTRYAG 4 cut(s) 1936, 2202, 2259, 2352
BstUI CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
BstV1I GCAGC 5 cut(s) 1003, 1571, 1574, 2338, 2366
BstX2I RGATCY 1 cut(s) 1878
BstXI CCANNNNNNTGG 1 cut(s) 2009
BstYI RGATCY 1 cut(s) 1878
BstZ17I GTATAC 1 cut(s) 1721
BsuRI GGCC 3 cut(s) 851, 1331, 2163
BtgI CCRYGG 2 cut(s) 489, 1471
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 8 cut(s) 243, 343, 592, 947, 1088, 1197, 1603, 1999
BtsI GCAGTG 1 cut(s) 1518
BtsIMutI CAGTG 5 cut(s) 898, 1030, 1464, 1518, 2226
BveI ACCTGC 1 cut(s) 2348
CfoI GCGC 8 cut(s) 212, 214, 216, 224, 486, 646, 1180, 1182
Cfr13I GGNCC 1 cut(s) 2455
Csp6I GTAC 2 cut(s) 736, 1734
CviQI GTAC 2 cut(s) 736, 1734
DdeI CTNAG 5 cut(s) 26, 1278, 2167, 2396, 2473
DpnI GATC 6 cut(s) 1319, 1604, 1712, 1880, 2100, 2562
DpnII GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
DraI TTTAAA 1 cut(s) 2517
EaeI YGGCCR 1 cut(s) 849
Eam1104I CTCTTC 1 cut(s) 1069
EarI CTCTTC 1 cut(s) 1069
Eco130I CCWWGG 1 cut(s) 1471
Eco24I GRGCYC 1 cut(s) 330
Eco47I GGWCC 1 cut(s) 2455
Eco57I CTGAAG 1 cut(s) 1161
Eco88I CYCGRG 1 cut(s) 265
EcoRI GAATTC 2 cut(s) 478, 1003
EcoRII CCWGG 1 cut(s) 2422
EcoT14I CCWWGG 1 cut(s) 1471
EcoT22I ATGCAT 1 cut(s) 2218
EcoT38I GRGCYC 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 1471
FaqI GGGAC 3 cut(s) 148, 307, 613
FbaI TGATCA 1 cut(s) 1317
FblI GTMKAC 2 cut(s) 1503, 1720
Fnu4HI GCNGC 8 cut(s) 647, 883, 1017, 1560, 1563, 2164, 2352, 2355
FokI GGATG 8 cut(s) 230, 350, 599, 954, 1095, 1204, 1610, 2006
FriOI GRGCYC 1 cut(s) 330
Fsp4HI GCNGC 8 cut(s) 647, 883, 1017, 1560, 1563, 2164, 2352, 2355
FspBI CTAG 5 cut(s) 1065, 1566, 1757, 1848, 2178
GlaI GCGC 8 cut(s) 211, 213, 215, 223, 485, 645, 1179, 1181
GluI GCNGC 8 cut(s) 647, 883, 1017, 1560, 1563, 2164, 2352, 2355
GsaI CCCAGC 1 cut(s) 732
GsuI CTGGAG 3 cut(s) 2123, 2295, 2406
HaeIII GGCC 3 cut(s) 851, 1331, 2163
HapII CCGG 1 cut(s) 852
HhaI GCGC 8 cut(s) 212, 214, 216, 224, 486, 646, 1180, 1182
Hin6I GCGC 8 cut(s) 210, 212, 214, 222, 484, 644, 1178, 1180
HinP1I GCGC 8 cut(s) 210, 212, 214, 222, 484, 644, 1178, 1180
HincII GTYRAC 2 cut(s) 307, 2143
HindII GTYRAC 2 cut(s) 307, 2143
HindIII AAGCTT 3 cut(s) 819, 2075, 2117
HpaII CCGG 1 cut(s) 852
HphI GGTGA 2 cut(s) 473, 1562
Hpy166II GTNNAC 7 cut(s) 307, 1504, 1721, 1892, 2125, 2143, 2458
Hpy188I TCNGA 9 cut(s) 261, 1141, 1266, 1317, 1637, 1687, 2058, 2378, 2476
Hpy188III TCNNGA 6 cut(s) 229, 1065, 1386, 1708, 2102, 2558
Hpy8I GTNNAC 7 cut(s) 307, 1504, 1721, 1892, 2125, 2143, 2458
Hpy99I CGWCG 1 cut(s) 1900
HpyAV CCTTC 5 cut(s) 535, 1073, 1136, 1261, 2156
HpyCH4IV ACGT 1 cut(s) 1632
HpyF10VI GCNNNNNNNGC 4 cut(s) 481, 751, 1402, 1622
HpyF3I CTNAG 5 cut(s) 26, 1278, 2167, 2396, 2473
HpySE526I ACGT 1 cut(s) 1632
HspAI GCGC 8 cut(s) 210, 212, 214, 222, 484, 644, 1178, 1180
Ksp22I TGATCA 1 cut(s) 1317
Kzo9I GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
LmnI GCTCC 2 cut(s) 240, 751
Lsp1109I GCAGC 5 cut(s) 1003, 1571, 1574, 2338, 2366
MaeI CTAG 5 cut(s) 1065, 1566, 1757, 1848, 2178
MaeII ACGT 1 cut(s) 1632
MaeIII GTNAC 4 cut(s) 796, 1628, 1662, 1705
MalI GATC 6 cut(s) 1319, 1604, 1712, 1880, 2100, 2562
MboI GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
MboII GAAGA 6 cut(s) 841, 1086, 1103, 1142, 1448, 2594
MflI RGATCY 1 cut(s) 1878
MhlI GDGCHC 1 cut(s) 330
MlyI GAGTC 4 cut(s) 164, 1265, 1564, 2201
MmeI TCCRAC 4 cut(s) 616, 2002, 2026, 2414
Mph1103I ATGCAT 1 cut(s) 2218
MroXI GAANNNNTTC 1 cut(s) 2078
MslI CAYNNNNRTG 7 cut(s) 405, 491, 1596, 1776, 1950, 1956, 2221
MspI CCGG 1 cut(s) 852
MspR9I CCNGG 2 cut(s) 853, 2424
Mva1269I GAATGC 6 cut(s) 394, 706, 1618, 1924, 2047, 2320
MvaI CCWGG 1 cut(s) 2424
MvnI CGCG 6 cut(s) 212, 214, 484, 646, 958, 1180
MwoI GCNNNNNNNGC 4 cut(s) 481, 751, 1402, 1622
NciI CCSGG 1 cut(s) 853
NcoI CCATGG 1 cut(s) 1471
NdeII GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
NlaIV GGNNCC 2 cut(s) 744, 1390
NmeAIII GCCGAG 1 cut(s) 198
NmuCI GTSAC 1 cut(s) 1705
NsiI ATGCAT 1 cut(s) 2218
NspI RCATGY 3 cut(s) 1172, 1775, 1945
OliI CACNNNNGTG 1 cut(s) 491
PaeI GCATGC 3 cut(s) 1172, 1775, 1945
PauI GCGCGC 3 cut(s) 210, 212, 1178
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PctI GAATGC 6 cut(s) 394, 706, 1618, 1924, 2047, 2320
PdmI GAANNNNTTC 1 cut(s) 2078
PfeI GAWTC 6 cut(s) 397, 791, 814, 859, 1382, 2492
PflMI CCANNNNNTGG 1 cut(s) 2089
PfoI TCCNGGA 1 cut(s) 2422
PkrI GCNGC 8 cut(s) 648, 884, 1018, 1561, 1564, 2165, 2353, 2356
PleI GAGTC 4 cut(s) 163, 1264, 1564, 2200
PpsI GAGTC 4 cut(s) 163, 1264, 1564, 2200
Psp6I CCWGG 1 cut(s) 2422
PspFI CCCAGC 1 cut(s) 728
PspGI CCWGG 1 cut(s) 2422
PspN4I GGNNCC 2 cut(s) 744, 1390
PspPI GGNCC 1 cut(s) 2455
PstI CTGCAG 2 cut(s) 2263, 2356
PsuI RGATCY 1 cut(s) 1878
PteI GCGCGC 3 cut(s) 210, 212, 1178
RsaI GTAC 2 cut(s) 737, 1735
RsaNI GTAC 2 cut(s) 736, 1734
RseI CAYNNNNRTG 7 cut(s) 405, 491, 1596, 1776, 1950, 1956, 2221
SatI GCNGC 8 cut(s) 647, 883, 1017, 1560, 1563, 2164, 2352, 2355
Sau3AI GATC 6 cut(s) 1317, 1602, 1710, 1878, 2098, 2560
Sau96I GGNCC 1 cut(s) 2455
ScaI AGTACT 1 cut(s) 737
SchI GAGTC 4 cut(s) 164, 1265, 1564, 2201
ScrFI CCNGG 2 cut(s) 853, 2424
SduI GDGCHC 1 cut(s) 330
SfcI CTRYAG 4 cut(s) 1936, 2202, 2259, 2352
SinI GGWCC 1 cut(s) 2455
SmiMI CAYNNNNRTG 7 cut(s) 405, 491, 1596, 1776, 1950, 1956, 2221
SmlI CTYRAG 3 cut(s) 578, 770, 1147
SmoI CTYRAG 3 cut(s) 578, 770, 1147
SphI GCATGC 3 cut(s) 1172, 1775, 1945
SsiI CCGC 6 cut(s) 55, 497, 646, 882, 1854, 2164
SspI AATATT 1 cut(s) 1906
SspMI CTAG 5 cut(s) 1065, 1566, 1757, 1848, 2178
StyD4I CCNGG 2 cut(s) 851, 2422
StyI CCWWGG 1 cut(s) 1471
TaiI ACGT 1 cut(s) 1635
TaqI TCGA 3 cut(s) 228, 1254, 2248
TatI WGTACW 1 cut(s) 735
TauI GCSGC 3 cut(s) 649, 885, 2166
TfiI GAWTC 6 cut(s) 397, 791, 814, 859, 1382, 2492
TscAI CASTG 5 cut(s) 898, 1030, 1464, 1525, 2226
TseFI GTSAC 1 cut(s) 1705
TseI GCWGC 5 cut(s) 1016, 1559, 1562, 2351, 2354
Tsp45I GTSAC 1 cut(s) 1705
TspRI CASTG 5 cut(s) 898, 1030, 1464, 1525, 2226
Van91I CCANNNNNTGG 1 cut(s) 2089
VpaK11BI GGWCC 1 cut(s) 2455
XapI RAATTY 6 cut(s) 478, 1003, 1241, 2280, 2502, 2518
XbaI TCTAGA 1 cut(s) 1064
XceI RCATGY 3 cut(s) 1172, 1775, 1945
XcmI CCANNNNNNNNNTGG 1 cut(s) 2430
XmiI GTMKAC 2 cut(s) 1503, 1720
XmnI GAANNNNTTC 1 cut(s) 2078
XspI CTAG 5 cut(s) 1065, 1566, 1757, 1848, 2178
ZrmI AGTACT 1 cut(s) 737
Zsp2I ATGCAT 1 cut(s) 2218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.