RLG00000024237

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0015655
Physical Location & Seq
Reverse (-)
33386443 .. 33389217
2775 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024237

Sequence Viewer

Length: 2412 bp
ATGGGTATACCTGTCACTGTAAGCCTTCAAAACCCACCTCTCCCGCCCAAACAGTTGCACACCAAAAACCCAACACCAAAAGACTTCAACTTGCTCATAAAGCACCACGCCAAGCTCAAAAACGACCATGCAATCCTCTCAACCTATACCCACATGGAGTCTCTTGGATTGGCGCCGGATAACTCCTCTCTCCCTCTCGTTCTCAAGGCCTGTGCGCGGCTGAGCGCCGTCGAGAGAGGGAAGGGGATACATTATTCGAGTATTCGGAACTCGGGTTTGGATAAAGATGTGAGGATTGGGACTGCCCTTGTTGATTTCTACTGCAAAAGTGGGCTCATTGATGATGCAGTTAAGGTGTTTGATGAAATGTGTGAGAGAGATTTGGTTCTGTGGAATGCTTTGATTCATGGGTGTGTGGGGTGTGGTTGTTATCAAGAGGCTATATGCTTGTTTAGGGAGATGCAGAGTGAGGGGTTGAAGCCGAATTCGCGCAGTGTGGTTGCATTGCTTTTGGCTTGTAGGGAGGTTTCGGAGTTGAGATGTGGGAAAGAGATACATGGCTATGGTTTGAGGAATGGATTGCTTGATTTGGATGCTCATGTGGGGACTGCTTTGATTGGGTTTTATATGAGATTTGATGTCAGAATGTCGCATCTTACATTTGATTCGATGGTTGTGAGGAATGTTGTTAGTTCGAATGCAATAATTACAGGGTATGTTGATGCTGGGGAGTACTTGATGGCGGCGAAGCTTTTCGTGCAGTTGCTTGTGGATGGGGTTGAGTTTGACTCTGTTTCGATGTTGGTTGTGATTCAGGCTTGTGCGAAAATTGGATCTGTTGAATTGGCTAGGCAAATTCATCAAATGGCTATAAAGTACAGCTACAGCAGTGATCTTTTCATTGTAAATGCATTGCTGAATATGTATAGTGAGTGTGGACGTATTGAATTATCGCGTTCATTATTTGAAACTGTCCCAAACCGTGATGTAGCTTTGTGGAATTCCATGCTAGCTGCATACAGTGAATACGGTTTTTATGAGGAAGCCATGAACTTATTTTCAAAAATGCAAACAGAAGGAATCATGGAAGATCAAAGAACTGTTTATATAATGTTGTCGTTATGTGAAGAAGTATCTGAAGGCTTGATAGCGGGAAAAAGCTTGCATGCTCTTGCGTGCAAGAGTGGGATGGAAATGGATGTTTCTCTCGGAAATACATTGTTAAGTATGTATGCTGAATTTAACTGTGTGCAGTCTGTTAAGAAGGTTTTTGCTGAGATAAAAGGTTCAGATGTTATATCATGGAACATTCTCATCAGGGCATTGGCCTGCAATGGATTGCAAGATGAAGCATGGGAAACATTTGGTGTCATGCGAGAATCTGGAACCAAGCCAAACTCGCACACCATAATATCTGTCCTTGCTATTTTTGAAGCTGAAACTTGTGTAAATACAGTGCGAGCAGTTCATGGTTTTGTAATGAAACATGGTATTGAAGTTGACCTATCTTTGAATACTGCACTAACAGATATATACATGAATAGTGGTGATGAAGCAGCAGCTAGGATTCTATTTGAGAACTGCCCCTATAAAGATGTGATCTCATGGAATGCTATGATTACCGGTTACATCAGAAACAATGAAAGCAATGAAGCTCGGTTACTTTTCAACCGTATGATTTCAGAAGTGAAACCCAACTCTGTCACAATCATAAGTATTCTCTCATCATGTACCCAAGTTGCATCTCTGTCTCTAGGTCAATGCTTGCATGCTTATGCAACTAGGAGGCACTTCTCATTTGACTTCGATTTGTCCCTTGCAAATGCTTTTATATCTATGTACGCTAGAAGTGGTAGTATGCAAAATGCTGAAAAGATCTTTAAGAGTTTACCAACAAGAAATGTTATATCATGGAATGCCTTGATAACTGGCTACAGCATGCACGGTCATGGATATGATGCTATTCTTGTGTTCCAACAAATGTTAGAGGATGGTTTCCAACCAAATGGTTCAACTTTTGTAGCTGTACTATCTGCTTGCAGACATGCTGGTTTGATAGAGATGGGATTGAAGCTTTTCCACACTATGGTACATGATCTGGAGATAACACCCGAGCTTGTGCACTATGGTTGTGTCGTTGACCTTCTTTGTCGTGCAGGCCGCTTAGATGAAGCTAGAGAGTTCATCGAGTCAATGCCTATTGAACCAGATGCATCTGTGTGGAGGGCTTTGCTTAATGGTTGTCGAGTTAATTCTGCGCCTGAGTTAGCTGGAGCAATCTTTGAGAAACTTGTGGAATTAGAACCCATGAATGCAGGGAATTATGTTCTGCTATCTAATATATATGCTGCAGCAGGCTTGAAGAGCAATTCCCTGGGATGCTGTGAGATGAAAGAAATTCCAGGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

804

Amino Acids

88.72

Weight (kDa)

5.58

Isoelectric Point (pI)

38.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_1 PF12854 101 - 123 3e-06 PPR repeat
PPR_2 PF13041 127 - 172 1.3e-09 PPR repeat family
PPR PF01535 129 - 159 8e-07 PPR repeat
PPR_2 PF13041 227 - 276 5.1e-06 PPR repeat family
PPR_2 PF13041 329 - 375 3.3e-07 PPR repeat family
PPR PF01535 333 - 361 2.9e-06 PPR repeat
PPR_2 PF13041 431 - 470 4.6e-08 PPR repeat family
PPR_2 PF13041 531 - 577 1.3e-08 PPR repeat family
PPR_2 PF13041 633 - 680 2.5e-09 PPR repeat family
PPR PF01535 636 - 666 9.1e-06 PPR repeat
PPR_1 PF12854 702 - 732 2.2e-06 PPR repeat
E_motif PF20431 755 - 787 3.4e-08 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g16860
malus_domestica MD12G1106700.v1.1
prunus_persica Prupe.7G125600_v2.0.a1
pyrus_communis pycom12g10720
rosa_chinensis RchiOBHm_Chr3g0470881
rosa_laevigata RLG00000024237
rosa_multiflora Rmu_sc0013860.1_g000005
rosa_roxburghii Rroxscaffold_1G00027940 Rroxscaffold_4G00331780 Rroxscaffold_6G00410450
rosa_rugosa Rorug03G0113300
rosa_samantha Rh3AG163100 Rh3BG188500 Rh3CG178500 Rh3DG187600
rosa_wichuraiana Rw3G015360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 2086
AccI GTMKAC 1 cut(s) 7
AccII CGCG 3 cut(s) 217, 490, 955
AciI CCGC 5 cut(s) 44, 217, 743, 1151, 2161
AclWI GGATC 1 cut(s) 841
AcsI RAATTY 5 cut(s) 484, 855, 1000, 1238, 2397
AcuI CTGAAG 1 cut(s) 1158
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 6 cut(s) 734, 878, 1732, 1841, 2028, 2091
AfiI CCNNNNNNNGG 2 cut(s) 216, 2086
AgeI ACCGGT 1 cut(s) 1622
AjnI CCWGG 2 cut(s) 2373, 2401
AjuI GAANNNNNNNTTGG 2 cut(s) 260, 292
Alw21I GWGCWC 1 cut(s) 2124
Alw26I GTCTC 2 cut(s) 165, 1755
Alw44I GTGCAC 1 cut(s) 2120
AlwI GGATC 1 cut(s) 841
Ama87I CYCGRG 2 cut(s) 271, 2111
AoxI GGCC 3 cut(s) 207, 1326, 2158
ApaLI GTGCAC 1 cut(s) 2120
ApeKI GCWGC 5 cut(s) 1013, 1556, 1559, 2348, 2351
ApoI RAATTY 5 cut(s) 484, 855, 1000, 1238, 2397
AsiGI ACCGGT 1 cut(s) 1622
Asp700I GAANNNNTTC 2 cut(s) 752, 2075
AspLEI GCGC 5 cut(s) 175, 217, 227, 492, 2260
AsuHPI GGTGA 1 cut(s) 1559
AsuII TTCGAA 1 cut(s) 695
AsuNHI GCTAGC 1 cut(s) 1009
AvaI CYCGRG 2 cut(s) 271, 2111
BaeGI GKGCMC 1 cut(s) 2124
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 336
BarI GAAGNNNNNNTAC 2 cut(s) 1644, 1676
Bbv12I GWGCWC 1 cut(s) 2124
BbvI GCAGC 5 cut(s) 1000, 1568, 1571, 2335, 2363
BccI CCATC 6 cut(s) 664, 733, 767, 1183, 1985, 2056
BceAI ACGGC 1 cut(s) 212
BciT130I CCWGG 2 cut(s) 2375, 2403
BciVI GTATCC 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 165, 1755
BfaI CTAG 7 cut(s) 849, 1010, 1563, 1754, 1782, 1845, 2175
BfmI CTRYAG 3 cut(s) 883, 1933, 2349
BfoI RGCGCY 2 cut(s) 176, 228
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 1875
BisI GCNGC 8 cut(s) 218, 744, 1014, 1557, 1560, 2161, 2349, 2352
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 8 cut(s) 219, 745, 1015, 1558, 1561, 2162, 2350, 2353
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 2 cut(s) 2375, 2403
BmeT110I CYCGRG 2 cut(s) 271, 2111
BmiI GGNNCC 2 cut(s) 174, 1387
BmrFI CCNGG 2 cut(s) 2375, 2403
BmtI GCTAGC 1 cut(s) 1013
BplI GAGNNNNNCTC 2 cut(s) 773, 805
BpmI CTGGAG 2 cut(s) 2120, 2292
Bpu1102I GCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 695
BpuEI CTTGAG 1 cut(s) 188
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 2373, 2374
BsaWI WCCGGW 1 cut(s) 1622
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 2086
Bse118I RCCGGY 1 cut(s) 1622
Bse1I ACTGG 1 cut(s) 1933
Bse3DI GCAATG 4 cut(s) 503, 911, 1339, 1654
BseBI CCWGG 2 cut(s) 2375, 2403
BseDI CCNNGG 2 cut(s) 2373, 2374
BseGI GGATG 6 cut(s) 598, 778, 1194, 1204, 1996, 2384
BseLI CCNNNNNNNGG 2 cut(s) 216, 2086
BseMI GCAATG 4 cut(s) 503, 911, 1339, 1654
BseMII CTCAG 3 cut(s) 212, 1266, 2253
BseNI ACTGG 1 cut(s) 1933
BseRI GAGGAG 1 cut(s) 175
BseSI GKGCMC 1 cut(s) 2124
BseXI GCAGC 5 cut(s) 1000, 1568, 1571, 2335, 2363
BseYI CCCAGC 1 cut(s) 725
BsgI GTGCAG 4 cut(s) 779, 1271, 1503, 2175
Bsh1236I CGCG 3 cut(s) 217, 490, 955
BshFI GGCC 3 cut(s) 209, 1328, 2160
BshNI GGYRCC 1 cut(s) 172
BshTI ACCGGT 1 cut(s) 1622
BsiHKAI GWGCWC 1 cut(s) 2124
BsiHKCI CYCGRG 2 cut(s) 271, 2111
BsiSI CCGG 2 cut(s) 176, 1623
BslFI GGGAC 4 cut(s) 313, 619, 959, 1798
BslI CCNNNNNNNGG 2 cut(s) 216, 2086
BsmAI GTCTC 2 cut(s) 165, 1755
BsmFI GGGAC 4 cut(s) 313, 619, 959, 1798
BsmI GAATGC 5 cut(s) 400, 703, 1615, 1921, 2317
BsnI GGCC 3 cut(s) 209, 1328, 2160
BsoBI CYCGRG 2 cut(s) 271, 2111
Bsp119I TTCGAA 1 cut(s) 695
Bsp1286I GDGCHC 2 cut(s) 336, 2124
Bsp143I GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
Bsp1720I GCTNAGC 1 cut(s) 221
BspACI CCGC 5 cut(s) 44, 217, 743, 1151, 2161
BspANI GGCC 3 cut(s) 209, 1328, 2160
BspCNI CTCAG 3 cut(s) 213, 1267, 2254
BspFNI CGCG 3 cut(s) 217, 490, 955
BspLI GGNNCC 2 cut(s) 174, 1387
BspMAI CTGCAG 1 cut(s) 2353
BspOI GCTAGC 1 cut(s) 1013
BspPI GGATC 1 cut(s) 841
BspQI GCTCTTC 1 cut(s) 2357
BspT104I TTCGAA 1 cut(s) 695
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 4 cut(s) 503, 911, 1339, 1654
BsrFI RCCGGY 1 cut(s) 1622
BsrI ACTGG 1 cut(s) 1933
BssAI RCCGGY 1 cut(s) 1622
BssECI CCNNGG 2 cut(s) 2373, 2374
BssMI GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
BssNAI GTATAC 1 cut(s) 8
BssNI GRCGYC 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 8
Bst2UI CCWGG 2 cut(s) 2375, 2403
Bst6I CTCTTC 1 cut(s) 2357
BstACI GRCGYC 1 cut(s) 173
BstBI TTCGAA 1 cut(s) 695
BstDEI CTNAG 4 cut(s) 221, 1275, 2164, 2262
BstF5I GGATG 6 cut(s) 598, 778, 1194, 1204, 1996, 2384
BstFNI CGCG 3 cut(s) 217, 490, 955
BstH2I RGCGCY 2 cut(s) 176, 228
BstHHI GCGC 5 cut(s) 175, 217, 227, 492, 2260
BstKTI GATC 6 cut(s) 836, 895, 1093, 1602, 1878, 2098
BstMAI GTCTC 2 cut(s) 165, 1755
BstMBI GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
BstMWI GCNNNNNNNGC 5 cut(s) 100, 487, 757, 1399, 2364
BstNI CCWGG 2 cut(s) 2375, 2403
BstNSI RCATGY 4 cut(s) 1169, 1772, 1942, 2048
BstSCI CCNGG 2 cut(s) 2373, 2401
BstSFI CTRYAG 3 cut(s) 883, 1933, 2349
BstSLI GKGCMC 1 cut(s) 2124
BstUI CGCG 3 cut(s) 217, 490, 955
BstV1I GCAGC 5 cut(s) 1000, 1568, 1571, 2335, 2363
BstX2I RGATCY 2 cut(s) 833, 1875
BstXI CCANNNNNNTGG 1 cut(s) 2006
BstYI RGATCY 2 cut(s) 833, 1875
BstZ17I GTATAC 1 cut(s) 8
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 3 cut(s) 209, 1328, 2160
BtsCI GGATG 6 cut(s) 598, 778, 1194, 1204, 1996, 2384
BtsI GCAGTG 2 cut(s) 499, 895
BtsIMutI CAGTG 5 cut(s) 15, 499, 895, 1027, 1461
CfoI GCGC 5 cut(s) 175, 217, 227, 492, 2260
Cfr10I RCCGGY 1 cut(s) 1622
Csp6I GTAC 6 cut(s) 733, 877, 1731, 1840, 2027, 2090
CspAI ACCGGT 1 cut(s) 1622
CviQI GTAC 6 cut(s) 733, 877, 1731, 1840, 2027, 2090
DdeI CTNAG 4 cut(s) 221, 1275, 2164, 2262
DinI GGCGCC 1 cut(s) 174
DpnI GATC 6 cut(s) 835, 894, 1092, 1601, 1877, 2097
DpnII GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
Eam1104I CTCTTC 1 cut(s) 2357
EarI CTCTTC 1 cut(s) 2357
Eco147I AGGCCT 1 cut(s) 209
Eco24I GRGCYC 1 cut(s) 336
Eco57I CTGAAG 1 cut(s) 1158
Eco88I CYCGRG 2 cut(s) 271, 2111
EcoRI GAATTC 2 cut(s) 484, 1000
EcoRII CCWGG 2 cut(s) 2373, 2401
EcoT22I ATGCAT 2 cut(s) 913, 2215
EcoT38I GRGCYC 1 cut(s) 336
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaqI GGGAC 4 cut(s) 313, 619, 959, 1798
FauI CCCGC 2 cut(s) 51, 1144
FblI GTMKAC 1 cut(s) 7
Fnu4HI GCNGC 8 cut(s) 218, 744, 1014, 1557, 1560, 2161, 2349, 2352
FokI GGATG 6 cut(s) 605, 785, 1201, 1211, 2003, 2391
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 8 cut(s) 218, 744, 1014, 1557, 1560, 2161, 2349, 2352
FspBI CTAG 7 cut(s) 849, 1010, 1563, 1754, 1782, 1845, 2175
GlaI GCGC 5 cut(s) 174, 216, 226, 491, 2259
GluI GCNGC 8 cut(s) 218, 744, 1014, 1557, 1560, 2161, 2349, 2352
GsaI CCCAGC 1 cut(s) 729
GsuI CTGGAG 2 cut(s) 2120, 2292
HaeII RGCGCY 2 cut(s) 176, 228
HaeIII GGCC 3 cut(s) 209, 1328, 2160
HapII CCGG 2 cut(s) 176, 1623
HhaI GCGC 5 cut(s) 175, 217, 227, 492, 2260
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 5 cut(s) 173, 215, 225, 490, 2258
HinP1I GCGC 5 cut(s) 173, 215, 225, 490, 2258
HincII GTYRAC 2 cut(s) 1501, 2140
HindII GTYRAC 2 cut(s) 1501, 2140
HindIII AAGCTT 3 cut(s) 749, 1159, 2072
HinfI GANTC 9 cut(s) 158, 403, 665, 788, 811, 1080, 1379, 1567, 2189
HpaII CCGG 2 cut(s) 176, 1623
HphI GGTGA 1 cut(s) 1559
Hpy166II GTNNAC 6 cut(s) 8, 938, 1501, 1889, 2122, 2140
Hpy188I TCNGA 8 cut(s) 267, 532, 644, 1138, 1211, 1291, 1634, 1684
Hpy188III TCNNGA 4 cut(s) 232, 434, 1383, 2099
Hpy8I GTNNAC 6 cut(s) 8, 938, 1501, 1889, 2122, 2140
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 6 cut(s) 35, 235, 1070, 1133, 1258, 2153
HpyCH4IV ACGT 1 cut(s) 940
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 487, 757, 1399, 2364
HpyF3I CTNAG 4 cut(s) 221, 1275, 2164, 2262
HpySE526I ACGT 1 cut(s) 940
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 5 cut(s) 173, 215, 225, 490, 2258
KasI GGCGCC 1 cut(s) 172
Kzo9I GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
LguI GCTCTTC 1 cut(s) 2357
LmnI GCTCC 1 cut(s) 2273
Lsp1109I GCAGC 5 cut(s) 1000, 1568, 1571, 2335, 2363
MaeI CTAG 7 cut(s) 849, 1010, 1563, 1754, 1782, 1845, 2175
MaeII ACGT 1 cut(s) 940
MaeIII GTNAC 4 cut(s) 13, 1625, 1659, 1702
MalI GATC 6 cut(s) 835, 894, 1092, 1601, 1877, 2097
MboI GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
MboII GAAGA 3 cut(s) 1100, 1139, 2374
MflI RGATCY 2 cut(s) 833, 1875
MhlI GDGCHC 2 cut(s) 336, 2124
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 3 cut(s) 167, 782, 2198
MmeI TCCRAC 2 cut(s) 1999, 2023
Mph1103I ATGCAT 2 cut(s) 913, 2215
MroXI GAANNNNTTC 2 cut(s) 752, 2075
MseI TTAA 7 cut(s) 351, 1223, 1242, 1260, 1881, 2235, 2250
MslI CAYNNNNRTG 6 cut(s) 411, 561, 1773, 1947, 1953, 2218
MspI CCGG 2 cut(s) 176, 1623
MspR9I CCNGG 2 cut(s) 2375, 2403
Mva1269I GAATGC 5 cut(s) 400, 703, 1615, 1921, 2317
MvaI CCWGG 2 cut(s) 2375, 2403
MvnI CGCG 3 cut(s) 217, 490, 955
MwoI GCNNNNNNNGC 5 cut(s) 100, 487, 757, 1399, 2364
NarI GGCGCC 1 cut(s) 173
NdeII GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
NheI GCTAGC 1 cut(s) 1009
NlaIV GGNNCC 2 cut(s) 174, 1387
NmuCI GTSAC 2 cut(s) 13, 1702
NsiI ATGCAT 2 cut(s) 913, 2215
NspI RCATGY 4 cut(s) 1169, 1772, 1942, 2048
NspV TTCGAA 1 cut(s) 695
PaeI GCATGC 3 cut(s) 1169, 1772, 1942
PasI CCCWGGG 1 cut(s) 2374
PceI AGGCCT 1 cut(s) 209
PciSI GCTCTTC 1 cut(s) 2357
PctI GAATGC 5 cut(s) 400, 703, 1615, 1921, 2317
PdmI GAANNNNTTC 2 cut(s) 752, 2075
PfeI GAWTC 6 cut(s) 403, 665, 811, 1080, 1379, 1567
PflMI CCANNNNNTGG 1 cut(s) 2086
PfoI TCCNGGA 1 cut(s) 2401
PinAI ACCGGT 1 cut(s) 1622
PkrI GCNGC 8 cut(s) 219, 745, 1015, 1558, 1561, 2162, 2350, 2353
PleI GAGTC 3 cut(s) 166, 782, 2197
PluTI GGCGCC 1 cut(s) 176
PpsI GAGTC 3 cut(s) 166, 782, 2197
Psp6I CCWGG 2 cut(s) 2373, 2401
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 2 cut(s) 2373, 2401
PspN4I GGNNCC 2 cut(s) 174, 1387
PstI CTGCAG 1 cut(s) 2353
PsuI RGATCY 2 cut(s) 833, 1875
RsaI GTAC 6 cut(s) 734, 878, 1732, 1841, 2028, 2091
RsaNI GTAC 6 cut(s) 733, 877, 1731, 1840, 2027, 2090
RseI CAYNNNNRTG 6 cut(s) 411, 561, 1773, 1947, 1953, 2218
SapI GCTCTTC 1 cut(s) 2357
SaqAI TTAA 7 cut(s) 351, 1223, 1242, 1260, 1881, 2235, 2250
SatI GCNGC 8 cut(s) 218, 744, 1014, 1557, 1560, 2161, 2349, 2352
Sau3AI GATC 6 cut(s) 833, 892, 1090, 1599, 1875, 2095
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 3 cut(s) 167, 782, 2198
ScrFI CCNGG 2 cut(s) 2375, 2403
SduI GDGCHC 2 cut(s) 336, 2124
SfcI CTRYAG 3 cut(s) 883, 1933, 2349
SfoI GGCGCC 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 695
SmiMI CAYNNNNRTG 6 cut(s) 411, 561, 1773, 1947, 1953, 2218
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 3 cut(s) 1169, 1772, 1942
SseBI AGGCCT 1 cut(s) 209
SsiI CCGC 5 cut(s) 44, 217, 743, 1151, 2161
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 7 cut(s) 849, 1010, 1563, 1754, 1782, 1845, 2175
StuI AGGCCT 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 2373, 2401
TaiI ACGT 1 cut(s) 943
TaqI TCGA 8 cut(s) 231, 257, 668, 695, 797, 1806, 2187, 2245
TatI WGTACW 3 cut(s) 732, 876, 2026
TauI GCSGC 3 cut(s) 220, 746, 2163
TfiI GAWTC 6 cut(s) 403, 665, 811, 1080, 1379, 1567
Tru1I TTAA 7 cut(s) 351, 1223, 1242, 1260, 1881, 2235, 2250
Tru9I TTAA 7 cut(s) 351, 1223, 1242, 1260, 1881, 2235, 2250
TscAI CASTG 5 cut(s) 22, 499, 895, 1027, 1461
TseFI GTSAC 2 cut(s) 13, 1702
TseI GCWGC 5 cut(s) 1013, 1556, 1559, 2348, 2351
Tsp45I GTSAC 2 cut(s) 13, 1702
TspRI CASTG 5 cut(s) 22, 499, 895, 1027, 1461
Van91I CCANNNNNTGG 1 cut(s) 2086
VneI GTGCAC 1 cut(s) 2120
XapI RAATTY 5 cut(s) 484, 855, 1000, 1238, 2397
XceI RCATGY 4 cut(s) 1169, 1772, 1942, 2048
XmiI GTMKAC 1 cut(s) 7
XmnI GAANNNNTTC 2 cut(s) 752, 2075
XspI CTAG 7 cut(s) 849, 1010, 1563, 1754, 1782, 1845, 2175
ZrmI AGTACT 1 cut(s) 734
Zsp2I ATGCAT 2 cut(s) 913, 2215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.