MD12G1106700.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015655
Physical Location & Seq
Reverse (-)
16894099 .. 16896687
2589 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1106700.v1.1.491

Sequence Viewer

Length: 2589 bp
ATGGATGTACCTGTCAACCTAAGCCTGCAAACACCACCTCCCACACCCAAACAGCTCCAAATCCAAAACCCAAAACCAGAAGACTGGAACTTGATCATAAAGCACCACGCCAGGCTAAAAAATGACAGTGCGATCCTCTCAACATATACCCAGATGGAATCTCTTGGAGTGGCACCGGATAGCGCCTCTCTGCCTCTGGTTCTCAAGGCATGTGCGAGGCTGGGCGCCGTTGAGAGAGGCAAGGGAATACATTCGAGCATTCGGAACACGGGTTTGATGAAAGATGTTAGAATTGGGACTGCCCTTGTCGATTTTTACTTCAAAGGCGGCTTTGTTGATGATGCAGTTGACGTGTTTGATGAAATGAGGGAGAGAGATTTGGTTTTGTGGAATGCTTTGATACATGGGTATGTGGGGTGTTGTTGTTACCGGGAGGCTGTGTTGTTGTTTTTGCAGATGCAGAATGAGGGATTGAGACCAAATTCACGTAGTGTGGTTGCATTGCTTTTGGCGTGTAGGGAGGTTTCGCAGTTGAGATCAGGAAAGGAGATACATGGATTTGGTTTCAGGAATGGACTCCTTGATTTGGATGCTCATGTGGGTACTGCATTGATTGGGTTTTATCTGAGATTTGACATCAAAATGTCGCGCCTAATGTTTGATTCGATGGTTGTGAGGAACATTGTTAGTTGGAATGCAATAATTACCGGTTATGTTGATGTTGGGGAGCACCTGATGGCCTTGAAGCTTTTTTTGCAGATGCTTGTGGATGGTGTTAAGTTCGACTCTACTACACTGCTGGTTGTCATTCAAGCCTGTGCAGGAATTGGATCTATTGAACTGGGCAGACAAATTCATCAAATGGTTATCAAGAATAGTTACAGTGGTGATCTGTTCACAGTAAATGCGATGCTCAATATGTATACCGAGTGTGGATGTTTTGAGTTGTCGCGTGAATTGTTTGAAGCTGTCCCCAACCGCGATGTTGCTTTGTGGAACTCCATGATATCTGCATATGTTGAATATGGCTTTTATGAGGAAGCTTTGAGCTTGTTTTCTAGAATGCGAATAGAAGGAATCAAGGAAGACGAAAGAACTATTGTTGTAATGTTGTCGGTGTGTGAAAATTTAGTTGATGGCCTGAGGAAGGGTAAAAGTTTGCATGCTCTAGCGAGGAAGAGTGGGATGAAAATGGATGTTTCTCTGGGGAATAGATTGTTGAATATGTATGCTGAGTTGAACTGCGTTGAATTTGTTCAGAAGGTTTTTGCTGAGATGAAACATTCAGACGTTATCTCATGGAATACTCTGATCCGGGCAATGGCCTGCAATGGATTACAAGACAAAGCATGGAAAATGTTTGCGGTGATGCGAGATTCTGAAACTAAGCCTAACTCGCACACAATAATTTCTATCCTTGCTACTTGTGAAGATGGAACTTGTTTAAATACAGTGCGAGCACTTCACGGTTTTGTGATAAAACATGGGATTGAAGTTGACCTCCCTTTAAACACTGCACTAACAGATATATATATGAATTGCGGTGAAGAAGCAACAGCTAGAACTTTATTTGAGGGATGTTCCAGCAGAGACGTGATCGCATGGAATTCTTTGATTACCAGTTACATCAAGAACAACGAAATTGACAAAGCTCAGTTACTATTTAGCCGTATGGTTGTAGAAGTGAAACCCAACTCGGTGACGATCATAAATATTCTATCATCATGTACCCAACTTGCCTCTCTGCCTCTAGGTCAATGCTTGCATGCTTATGCAACTAGAAAGCAACTCTCTTTTGGTTTTGATTTACCTCTTGCAAATGCTTTTATATCAATGTATGCAAGAAGTGGGAGTATGCAAAATGCTGAAAATATCTTTAGAATTTTACCGACGAGGGATATTATTTCATGGAATGCCTTGATTACTGGGTACAGCATGCACGGTCAAGGATATGATGCTATTCGTGCGTTTTCACGAGTGATACAAGATGGTATCCGTCCAAACGGGGCAACTTTTGTAGCTGTTCTATCTGCTTGCAGGCATTCTGGTTTGACAGAGATAGGATTGCAGCTTTTTCACACTATGGTACACGATTTTAAGATATCACCTGAGCTTGTTCACTATGGTTGTGTTGTTGACCTTCTTGGTCGCGCAGGCCGATTAGATGAAGCTAAAGAGTTCATCGAATCAATGCCTATTGAACCGGATGCATCAGTGTGGAGAGCCTTGCTCAATGCTTGTCGGATTCATTCTGCCACTGAGTTAGTTGGAACCATCTTTGAAAAACTTGTCGAATTAGAACCCATGAATGCAGGGAATTATGTTTTGGTATCTAATATATACGCTGCAGCAGGGCTGTGGTTAGAGGTCAGGCAGACAAGAACAATGCTCAGGGAAAAGGGTTTAAAACAGCCTCCGGGAATAAGTTGGATTGTTGTAAAAAGTCAGGTTCACTGTTTTGTTGCCTCAGACACATCACACCTTCAATCAGACGAAATTTATTCAAGCTTAAATTCACTTTCAGTCTTGATCAAAGAAAGTGGATATATTCCTGATCTTCACTGGGTTTTCCGAGATGAAGAGGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

863

Amino Acids

96.18

Weight (kDa)

6.12

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 126 - 171 4.6e-07 PPR repeat family
PPR_2 PF13041 226 - 274 2.6e-09 PPR repeat family
PPR_2 PF13041 328 - 374 5e-08 PPR repeat family
PPR PF01535 332 - 360 1.9e-07 PPR repeat
PPR_2 PF13041 430 - 473 1.7e-08 PPR repeat family
PPR_2 PF13041 530 - 576 4e-07 PPR repeat family
PPR_2 PF13041 632 - 679 7.2e-07 PPR repeat family
E_motif PF20431 750 - 811 1.1e-17 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g16860
malus_domestica MD12G1106700.v1.1
prunus_persica Prupe.7G125600_v2.0.a1
pyrus_communis pycom12g10720
rosa_chinensis RchiOBHm_Chr3g0470881
rosa_laevigata RLG00000024237
rosa_multiflora Rmu_sc0013860.1_g000005
rosa_roxburghii Rroxscaffold_1G00027940 Rroxscaffold_4G00331780 Rroxscaffold_6G00410450
rosa_rugosa Rorug03G0113300
rosa_samantha Rh3AG163100 Rh3BG188500 Rh3CG178500 Rh3DG187600
rosa_wichuraiana Rw3G015360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 172, 224
AccI GTMKAC 1 cut(s) 923
AccII CGCG 4 cut(s) 649, 952, 981, 2151
AciI CCGC 4 cut(s) 327, 979, 1364, 1542
AclWI GGATC 3 cut(s) 127, 838, 1306
AcsI RAATTY 8 cut(s) 481, 852, 1126, 1250, 1606, 1881, 2496, 2512
AcyI GRCGYC 1 cut(s) 225
AdeI CACNNNGTG 1 cut(s) 491
AfaI GTAC 5 cut(s) 9, 604, 1729, 1931, 2088
AfiI CCNNNNNNNGG 3 cut(s) 586, 1147, 1321
AflIII ACRYGT 1 cut(s) 351
AgeI ACCGGT 1 cut(s) 707
AjiI CACGTC 2 cut(s) 352, 1594
AjnI CCWGG 1 cut(s) 110
AjuI GAANNNNNNNTTGG 2 cut(s) 2309, 2341
Alw21I GWGCWC 2 cut(s) 732, 1462
Alw26I GTCTC 2 cut(s) 469, 1584
AlwI GGATC 3 cut(s) 127, 838, 1306
AoxI GGCC 4 cut(s) 738, 1138, 1323, 2155
ApeKI GCWGC 3 cut(s) 2068, 2345, 2348
ApoI RAATTY 8 cut(s) 481, 852, 1126, 1250, 1606, 1881, 2496, 2512
AsiGI ACCGGT 1 cut(s) 707
Asp700I GAANNNNTTC 2 cut(s) 250, 1254
AspLEI GCGC 4 cut(s) 185, 227, 651, 2153
AsuC2I CCSGG 3 cut(s) 431, 1316, 2418
AsuHPI GGTGA 5 cut(s) 899, 1378, 1556, 1711, 2097
AxyI CCTNAGG 1 cut(s) 1142
BaeI ACNNNNGTAYC 2 cut(s) 392, 425
BanI GGYRCC 2 cut(s) 172, 224
BauI CACGAG 1 cut(s) 1974
BbsI GAAGAC 2 cut(s) 87, 1092
Bbv12I GWGCWC 2 cut(s) 732, 1462
BbvI GCAGC 3 cut(s) 2080, 2332, 2360
BccI CCATC 8 cut(s) 148, 661, 730, 764, 1130, 1427, 1982, 2282
BceAI ACGGC 2 cut(s) 212, 1653
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 2003
BclI TGATCA 2 cut(s) 93, 2529
BcnI CCSGG 3 cut(s) 431, 1316, 2418
BcoDI GTCTC 2 cut(s) 469, 1584
BfaI CTAG 5 cut(s) 1059, 1169, 1560, 1751, 1779
BfmI CTRYAG 1 cut(s) 2346
BfoI RGCGCY 2 cut(s) 186, 228
BfuI GTATCC 1 cut(s) 2003
BisI GCNGC 4 cut(s) 328, 2069, 2346, 2349
BlsI GCNGC 4 cut(s) 329, 2070, 2347, 2350
Bme1390I CCNGG 4 cut(s) 112, 431, 1316, 2418
BmgBI CACGTC 2 cut(s) 352, 1594
BmiI GGNNCC 3 cut(s) 174, 226, 2272
BmrFI CCNGG 4 cut(s) 112, 431, 1316, 2418
BmrI ACTGGG 3 cut(s) 851, 1935, 2572
BmsI GCATC 9 cut(s) 331, 447, 580, 750, 900, 1359, 1945, 2197, 2219
BmuI ACTGGG 3 cut(s) 851, 1935, 2572
BpiI GAAGAC 2 cut(s) 87, 1092
BplI GAGNNNNNCTC 2 cut(s) 2214, 2246
Bpu10I CCTNAGC 3 cut(s) 20, 2109, 2390
BpuEI CTTGAG 1 cut(s) 188
BpuMI CCSGG 3 cut(s) 431, 1316, 2418
BsaAI YACGTR 1 cut(s) 488
BsaHI GRCGYC 1 cut(s) 225
BsaI GGTCTC 1 cut(s) 469
BsaWI WCCGGW 3 cut(s) 175, 707, 2203
BsaXI ACNNNNNCTCC 4 cut(s) 22, 52, 425, 455
Bsc4I CCNNNNNNNGG 3 cut(s) 586, 1147, 1321
Bse118I RCCGGY 1 cut(s) 707
Bse1I ACTGG 5 cut(s) 89, 846, 1620, 1930, 2567
Bse21I CCTNAGG 1 cut(s) 1142
Bse3DI GCAATG 3 cut(s) 500, 1326, 1336
BseBI CCWGG 1 cut(s) 112
BseGI GGATG 8 cut(s) 10, 595, 775, 941, 1191, 1201, 1583, 2212
BseLI CCNNNNNNNGG 3 cut(s) 586, 1147, 1321
BseMI GCAATG 3 cut(s) 500, 1326, 1336
BseMII CTCAG 9 cut(s) 617, 1133, 1224, 1263, 1667, 2100, 2250, 2404, 2481
BseNI ACTGG 5 cut(s) 89, 846, 1620, 1930, 2567
BseXI GCAGC 3 cut(s) 2080, 2332, 2360
BseYI CCCAGC 1 cut(s) 220
BsgI GTGCAG 2 cut(s) 840, 1500
Bsh1236I CGCG 4 cut(s) 649, 952, 981, 2151
BshFI GGCC 4 cut(s) 740, 1140, 1325, 2157
BshNI GGYRCC 2 cut(s) 172, 224
BshTI ACCGGT 1 cut(s) 707
BsiHKAI GWGCWC 2 cut(s) 732, 1462
BsiSI CCGG 6 cut(s) 176, 430, 708, 1315, 2204, 2417
BslFI GGGAC 2 cut(s) 310, 956
BslI CCNNNNNNNGG 3 cut(s) 586, 1147, 1321
BsmAI GTCTC 2 cut(s) 469, 1584
BsmBI CGTCTC 1 cut(s) 1584
BsmFI GGGAC 2 cut(s) 310, 956
BsmI GAATGC 7 cut(s) 258, 397, 700, 1068, 1918, 2041, 2314
BsnI GGCC 4 cut(s) 740, 1140, 1325, 2157
Bso31I GGTCTC 1 cut(s) 469
Bsp1286I GDGCHC 2 cut(s) 732, 1462
BspACI CCGC 4 cut(s) 327, 979, 1364, 1542
BspANI GGCC 4 cut(s) 740, 1140, 1325, 2157
BspCNI CTCAG 9 cut(s) 618, 1134, 1225, 1264, 1666, 2101, 2251, 2403, 2480
BspFNI CGCG 4 cut(s) 649, 952, 981, 2151
BspLI GGNNCC 3 cut(s) 174, 226, 2272
BspMAI CTGCAG 1 cut(s) 2350
BspPI GGATC 3 cut(s) 127, 838, 1306
BspT107I GGYRCC 2 cut(s) 172, 224
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 3 cut(s) 500, 1326, 1336
BsrFI RCCGGY 1 cut(s) 707
BsrI ACTGG 5 cut(s) 89, 846, 1620, 1930, 2567
BssAI RCCGGY 1 cut(s) 707
BssNAI GTATAC 1 cut(s) 924
BssNI GRCGYC 1 cut(s) 225
BssSI CACGAG 1 cut(s) 1974
Bst1107I GTATAC 1 cut(s) 924
Bst2BI CACGAG 1 cut(s) 1974
Bst2UI CCWGG 1 cut(s) 112
Bst4CI ACNGT 7 cut(s) 128, 884, 901, 1453, 1469, 1943, 2456
Bst6I CTCTTC 2 cut(s) 1172, 2574
BstACI GRCGYC 1 cut(s) 225
BstBAI YACGTR 1 cut(s) 488
BstENI CCTNNNNNAGG 1 cut(s) 1145
BstF5I GGATG 8 cut(s) 10, 595, 775, 941, 1191, 1201, 1583, 2212
BstFNI CGCG 4 cut(s) 649, 952, 981, 2151
BstH2I RGCGCY 2 cut(s) 186, 228
BstHHI GCGC 4 cut(s) 185, 227, 651, 2153
BstMAI GTCTC 2 cut(s) 469, 1584
BstMWI GCNNNNNNNGC 3 cut(s) 754, 1396, 1964
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 4 cut(s) 213, 1166, 1769, 1939
BstSCI CCNGG 4 cut(s) 110, 429, 1314, 2416
BstSFI CTRYAG 1 cut(s) 2346
BstUI CGCG 4 cut(s) 649, 952, 981, 2151
BstV1I GCAGC 3 cut(s) 2080, 2332, 2360
BstV2I GAAGAC 2 cut(s) 87, 1092
BstX2I RGATCY 1 cut(s) 830
BstXI CCANNNNNNTGG 1 cut(s) 84
BstYI RGATCY 1 cut(s) 830
BstZ17I GTATAC 1 cut(s) 924
Bsu36I CCTNAGG 1 cut(s) 1142
BsuI GTATCC 1 cut(s) 2003
BsuRI GGCC 4 cut(s) 740, 1140, 1325, 2157
BtgZI GCGATG 2 cut(s) 923, 996
BtrI CACGTC 2 cut(s) 352, 1594
BtsCI GGATG 8 cut(s) 10, 595, 775, 941, 1191, 1201, 1583, 2212
BtsI GCAGTG 2 cut(s) 794, 1512
BtsIMutI CAGTG 9 cut(s) 133, 794, 889, 1458, 1512, 2220, 2256, 2452, 2560
CfoI GCGC 4 cut(s) 185, 227, 651, 2153
Cfr10I RCCGGY 1 cut(s) 707
Csp6I GTAC 5 cut(s) 8, 603, 1728, 1930, 2087
CspAI ACCGGT 1 cut(s) 707
CspCI CAANNNNNGTGG 2 cut(s) 2521, 2556
CviQI GTAC 5 cut(s) 8, 603, 1728, 1930, 2087
DinI GGCGCC 1 cut(s) 226
DraI TTTAAA 3 cut(s) 1446, 1509, 2406
DraIII CACNNNGTG 1 cut(s) 491
Eam1104I CTCTTC 2 cut(s) 1172, 2574
EarI CTCTTC 2 cut(s) 1172, 2574
Eco31I GGTCTC 1 cut(s) 469
Eco32I GATATC 2 cut(s) 1008, 2103
Eco81I CCTNAGG 1 cut(s) 1142
EcoNI CCTNNNNNAGG 1 cut(s) 1145
EcoRI GAATTC 1 cut(s) 1606
EcoRII CCWGG 1 cut(s) 110
EcoRV GATATC 2 cut(s) 1008, 2103
EcoT22I ATGCAT 1 cut(s) 2212
EgeI GGCGCC 1 cut(s) 226
EheI GGCGCC 1 cut(s) 226
Esp3I CGTCTC 1 cut(s) 1584
FaqI GGGAC 2 cut(s) 310, 956
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 2 cut(s) 93, 2529
FblI GTMKAC 1 cut(s) 923
Fnu4HI GCNGC 4 cut(s) 328, 2069, 2346, 2349
FokI GGATG 8 cut(s) 17, 602, 782, 948, 1198, 1208, 1590, 2219
Fsp4HI GCNGC 4 cut(s) 328, 2069, 2346, 2349
FspBI CTAG 5 cut(s) 1059, 1169, 1560, 1751, 1779
GlaI GCGC 4 cut(s) 184, 226, 650, 2152
GluI GCNGC 4 cut(s) 328, 2069, 2346, 2349
GsaI CCCAGC 1 cut(s) 224
HaeII RGCGCY 2 cut(s) 186, 228
HaeIII GGCC 4 cut(s) 740, 1140, 1325, 2157
HapII CCGG 6 cut(s) 176, 430, 708, 1315, 2204, 2417
HhaI GCGC 4 cut(s) 185, 227, 651, 2153
Hin1I GRCGYC 1 cut(s) 225
Hin6I GCGC 4 cut(s) 183, 225, 649, 2151
HinP1I GCGC 4 cut(s) 183, 225, 649, 2151
HincII GTYRAC 4 cut(s) 16, 349, 1498, 2137
HindII GTYRAC 4 cut(s) 16, 349, 1498, 2137
HindIII AAGCTT 3 cut(s) 746, 1041, 2506
HinfI GANTC 8 cut(s) 158, 576, 662, 785, 1077, 1376, 2186, 2245
HpaII CCGG 6 cut(s) 176, 430, 708, 1315, 2204, 2417
HphI GGTGA 5 cut(s) 899, 1378, 1556, 1711, 2097
Hpy166II GTNNAC 9 cut(s) 16, 349, 897, 924, 1498, 2089, 2119, 2137, 2452
Hpy188III TCNNGA 8 cut(s) 540, 568, 871, 1059, 1630, 1974, 2527, 2552
Hpy8I GTNNAC 9 cut(s) 16, 349, 897, 924, 1498, 2089, 2119, 2137, 2452
Hpy99I CGWCG 1 cut(s) 1894
HpyAV CCTTC 5 cut(s) 1067, 1141, 1255, 2150, 2492
HpyCH4III ACNGT 7 cut(s) 128, 884, 901, 1453, 1469, 1943, 2456
HpyCH4IV ACGT 4 cut(s) 351, 487, 1290, 1593
HpyF10VI GCNNNNNNNGC 3 cut(s) 754, 1396, 1964
HpySE526I ACGT 4 cut(s) 351, 487, 1290, 1593
Hsp92I GRCGYC 1 cut(s) 225
HspAI GCGC 4 cut(s) 183, 225, 649, 2151
KasI GGCGCC 1 cut(s) 224
Ksp22I TGATCA 2 cut(s) 93, 2529
LmnI GCTCC 2 cut(s) 60, 727
Lsp1109I GCAGC 3 cut(s) 2080, 2332, 2360
LweI GCATC 9 cut(s) 331, 447, 580, 750, 900, 1359, 1945, 2197, 2219
MaeI CTAG 5 cut(s) 1059, 1169, 1560, 1751, 1779
MaeII ACGT 4 cut(s) 351, 487, 1290, 1593
MaeIII GTNAC 5 cut(s) 425, 878, 1622, 1656, 1699
MboII GAAGA 6 cut(s) 92, 1097, 1189, 1442, 1559, 2549
MflI RGATCY 1 cut(s) 830
MhlI GDGCHC 2 cut(s) 732, 1462
Mly113I GGCGCC 1 cut(s) 225
MlyI GAGTC 2 cut(s) 570, 779
MmeI TCCRAC 4 cut(s) 671, 2222, 2248, 2408
Mph1103I ATGCAT 1 cut(s) 2212
MroXI GAANNNNTTC 2 cut(s) 250, 1254
MseI TTAA 6 cut(s) 777, 1445, 1508, 2097, 2405, 2510
MslI CAYNNNNRTG 4 cut(s) 408, 641, 1770, 2215
MspI CCGG 6 cut(s) 176, 430, 708, 1315, 2204, 2417
MspR9I CCNGG 4 cut(s) 112, 431, 1316, 2418
Mva1269I GAATGC 7 cut(s) 258, 397, 700, 1068, 1918, 2041, 2314
MvaI CCWGG 1 cut(s) 112
MvnI CGCG 4 cut(s) 649, 952, 981, 2151
MwoI GCNNNNNNNGC 3 cut(s) 754, 1396, 1964
NarI GGCGCC 1 cut(s) 225
NciI CCSGG 3 cut(s) 431, 1316, 2418
NdeI CATATG 1 cut(s) 1015
NlaIV GGNNCC 3 cut(s) 174, 226, 2272
NmuCI GTSAC 1 cut(s) 1699
NsiI ATGCAT 1 cut(s) 2212
NspI RCATGY 4 cut(s) 213, 1166, 1769, 1939
PaeI GCATGC 3 cut(s) 1166, 1769, 1939
PcsI WCGNNNNNNNCGW 1 cut(s) 2155
PctI GAATGC 7 cut(s) 258, 397, 700, 1068, 1918, 2041, 2314
PdmI GAANNNNTTC 2 cut(s) 250, 1254
PfeI GAWTC 6 cut(s) 158, 662, 1077, 1376, 2186, 2245
PfoI TCCNGGA 1 cut(s) 2416
PinAI ACCGGT 1 cut(s) 707
PkrI GCNGC 4 cut(s) 329, 2070, 2347, 2350
PleI GAGTC 2 cut(s) 570, 779
PluTI GGCGCC 1 cut(s) 228
PpsI GAGTC 2 cut(s) 570, 779
Ppu21I YACGTR 1 cut(s) 488
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 3 cut(s) 174, 226, 2272
PstI CTGCAG 1 cut(s) 2350
PsuI RGATCY 1 cut(s) 830
RsaI GTAC 5 cut(s) 9, 604, 1729, 1931, 2088
RsaNI GTAC 5 cut(s) 8, 603, 1728, 1930, 2087
RseI CAYNNNNRTG 4 cut(s) 408, 641, 1770, 2215
SaqAI TTAA 6 cut(s) 777, 1445, 1508, 2097, 2405, 2510
SatI GCNGC 4 cut(s) 328, 2069, 2346, 2349
SchI GAGTC 2 cut(s) 570, 779
ScrFI CCNGG 4 cut(s) 112, 431, 1316, 2418
SduI GDGCHC 2 cut(s) 732, 1462
SfaNI GCATC 9 cut(s) 331, 447, 580, 750, 900, 1359, 1945, 2197, 2219
SfcI CTRYAG 1 cut(s) 2346
SfoI GGCGCC 1 cut(s) 226
SmiMI CAYNNNNRTG 4 cut(s) 408, 641, 1770, 2215
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SphI GCATGC 3 cut(s) 1166, 1769, 1939
SsiI CCGC 4 cut(s) 327, 979, 1364, 1542
SspDI GGCGCC 1 cut(s) 224
SspI AATATT 1 cut(s) 1714
SspMI CTAG 5 cut(s) 1059, 1169, 1560, 1751, 1779
StyD4I CCNGG 4 cut(s) 110, 429, 1314, 2416
TaaI ACNGT 7 cut(s) 128, 884, 901, 1453, 1469, 1943, 2456
TaiI ACGT 4 cut(s) 354, 490, 1293, 1596
TaqI TCGA 6 cut(s) 254, 309, 665, 783, 2184, 2292
TauI GCSGC 1 cut(s) 330
TfiI GAWTC 6 cut(s) 158, 662, 1077, 1376, 2186, 2245
Tru1I TTAA 6 cut(s) 777, 1445, 1508, 2097, 2405, 2510
Tru9I TTAA 6 cut(s) 777, 1445, 1508, 2097, 2405, 2510
TscAI CASTG 9 cut(s) 133, 801, 889, 1458, 1519, 2220, 2263, 2459, 2567
TseFI GTSAC 1 cut(s) 1699
TseI GCWGC 3 cut(s) 2068, 2345, 2348
Tsp45I GTSAC 1 cut(s) 1699
TspGWI ACGGA 1 cut(s) 1985
TspRI CASTG 9 cut(s) 133, 801, 889, 1458, 1519, 2220, 2263, 2459, 2567
XagI CCTNNNNNAGG 1 cut(s) 1145
XapI RAATTY 8 cut(s) 481, 852, 1126, 1250, 1606, 1881, 2496, 2512
XbaI TCTAGA 1 cut(s) 1058
XceI RCATGY 4 cut(s) 213, 1166, 1769, 1939
XmiI GTMKAC 1 cut(s) 923
XmnI GAANNNNTTC 2 cut(s) 250, 1254
XspI CTAG 5 cut(s) 1059, 1169, 1560, 1751, 1779
Zsp2I ATGCAT 1 cut(s) 2212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.