Rw3G015360

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015655
Physical Location & Seq
Forward (+)
15832869 .. 15835988
3120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G015360.1

Sequence Viewer

Length: 2589 bp
ATGGATCTACCTGTCACTGTAAGCCTTCAGAACCCACCTCTCCCACCCAAACAGTTCCACACCAAAAACCCAACACCAAAAGACTTCAACTTGCTCATAAAGCACCACGCCAACCTCAAAAACGACCATGCAATCCTCTCAACCTATACCCACATGGAGTCTCTAGGATTGGCGCCGGATAACACCTCTCTCCCTCTCGTTCTCAAGGCCTGTGCGCGGCTGAGCGCCGTCGAGAGAGGGAAGGGGATACATTCGAGTATTCGGAACTCGGGTTTGGATAAAGATGTGAGGATTGGGACTTCCCTTGTTGATTTCTACTGCAAAAGTGGGCTCGTTGACGATGCAGTGAAGGTGTTTGATGCAATGTGTGAGAGAGATTTGGTTCTGTGGAATGCTTTGATTCATGGGTTTGTCGGGTGTGGTTGTTATCGAGAGGCTATATGCTTGTTTAGGGAGATGCAGAGTGAGGGGTTGAAGCCGAATTCGCGCAGTGTCGTTGCATTGCTTTTGGCTTGTAGGGAGGTTGCGGAGTTGAGATGTGGGAAAGAGATACATGGCTATGGTTTGAGGAATGGATTGCTTGATTTGGATGCGCATGTGGGGACTGCTTTGATTGGGTTTTATATGAGATTTGATGTCAGAATGTCGCATCTTACATTTGATTCGATGGTTGTGAGGAATGTTGTTAGTTCGAATGCAATAATTACAGGGTATGTTGATGTTGGGGAGTACTTGATGGCGGTGAAGCTTTTCGTGCAGTTGCTTGTGGACGGGGTTGAGTTTGACTCTGTTTCAATGTTGGTTGTGATTCAGGCTTGTGCAAAAATTGGAGCTGTTGAATTGGCTAGGCAAATTCATCAGATTGCTGTGAAGTACAGCTACAGCAGTGATCTTTTCATTGTAAATGCATTGCTGAATATGTATAGTGAGTGTGGACGTATTGAATTATCACGTGCATTATTTGAAACTGCCCCAAACCGTGATGTAGCTTTGTGGAATTCCATGCTAGCTGCATACAGTGAATATGGTTTTTATGAGGAAGCCATGAACTTATTTTTGAAAATGCGAACAGAAGGAATCGTGGAAGATCAAAGAACTGTTTATATAATGTTGTTGTTATGTGAAGAAATATCTGAAGGCTTGATAAAGGGAAAAAGCTTGCATGCTCTTGCGCGCAAGAGTGGGATGGAAATGGATGTTTCTCTCGGAAATACATTGTTAAGTATGTATGCTGAATTTAACTGTGTGCAGTCTGTTAAGAAGGTTTTTGCTGAGATGAAAGGTGCAGATGTTATATCATGGAACATTTTGATCAGGGCATTGGCCTGCAATGGATTGCGAGATGAAGCATGGGAAACATTTGGTGTCATGCGAGAATCTGGAACCAAGCCAAACTCGCACACCATAATATCTGTCCTTGCTATTTTTGAAGCTGACACTAGTGTAAATACAGTGCGAGCAATTCATGGTTTTGTAATGAAACATGGTATTGAAGTTGACCCATCTTTGAATACTGCACTAACAGATATATACATGAATAGTGGTGATGAAGCAGCAGCTAGGATTCTATTTGAGAACTGCCCCTATAAAGATGTGATCTCATGGAATGCTATAATTGCCGGTTACGTCAGAAACAATGAAAGCAATGAAGCTCGGTTACTTTTCAACCGTATGATTTCAGAAGTCAAACCCAACTCTGTCACGATCATTAGTATTCTCTCATCATGTACCCAAGTTGCATCTCTGTCTCTAGGTCAATGCTTGCATGCTTATGCAACTAGGAGGCAATTCTCATTTGACTTCGATTTGTCCCTTGCAAATGCTTTTATATCCATGTACGCTAGAAGCGGTAGTATGCAAAATGCTGAAAAGATCTTTAAGAGTTTACCAACGAGAAATGTTATATCATGGAATTCCTTGATAACTGGCTACAGCATGCACGGTCATGGATATGATGCTATTCTTGTGTTCCAACAAATGTTAGAGGATGGTTTCCAACCAAATGGTTCAACTTTTGTAGCTGTACTGTCTGCTTGCAGACATTCTGGTTTGATAGAGATGGGATTGAAGCTTTTCCACACTATGGTACATGATCTGGAGATAACACCCGAGCTTGTTCACTATGGTTGCGTCGTTGACCTTCTTTGTCGTGCAGGCCGCTTAGATGAAGCTAGAGAGTTCATCGAGTCAATGCCTATTGAACCAGATGCATCTGTGTGGAGGGCTTTGCTCAATGGTTGTCGAGTTAATTCTGCGCCTGAGTTAGCTGGAGCAATCTTTGAGAAACTTGTGGAATTAGAACCCATGAATGCAGGGAATTATGTTCTGCTATCTAATGTATATGCTGCAGCAGGCCTATGGTTAGAGGTCAGGAAGATAAGAACATTGCTGAGGGAAAAGGGTTTGAAAAAGCCTCCAGCAACAAGCTGGATTGTTATTAAAAGTCAGGTCCACTCTTTTGTTGCCTCAGACACATCACACCTTGATTCAAACAGAATTTATGCTTGTTTAAATTCTCTGTCAGCCTTAATCAAAGAAATTGGTTATACTCCTGATCTTCAATGGGTTTTGCATGAAGAAGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

862

Amino Acids

95.79

Weight (kDa)

5.9

Isoelectric Point (pI)

35.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 126 - 171 1.6e-09 PPR repeat family
PPR PF01535 128 - 158 1.3e-06 PPR repeat
PPR_2 PF13041 226 - 275 2.4e-06 PPR repeat family
PPR_2 PF13041 328 - 371 8.9e-06 PPR repeat family
PPR PF01535 332 - 360 6.5e-06 PPR repeat
PPR_2 PF13041 430 - 469 2.6e-08 PPR repeat family
PPR_2 PF13041 530 - 576 2.6e-08 PPR repeat family
PPR_2 PF13041 632 - 679 3.2e-09 PPR repeat family
PPR PF01535 635 - 665 5.8e-06 PPR repeat
PPR_1 PF12854 701 - 731 2.3e-06 PPR repeat
E_motif PF20431 754 - 811 1.9e-18 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015655)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g16860
malus_domestica MD12G1106700.v1.1
prunus_persica Prupe.7G125600_v2.0.a1
pyrus_communis pycom12g10720
rosa_chinensis RchiOBHm_Chr3g0470881
rosa_laevigata RLG00000024237
rosa_multiflora Rmu_sc0013860.1_g000005
rosa_roxburghii Rroxscaffold_1G00027940 Rroxscaffold_4G00331780 Rroxscaffold_6G00410450
rosa_rugosa Rorug03G0113300
rosa_samantha Rh3AG163100 Rh3BG188500 Rh3CG178500 Rh3DG187600
rosa_wichuraiana Rw3G015360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 594
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 2083
AccII CGCG 3 cut(s) 217, 487, 1174
AciI CCGC 5 cut(s) 217, 527, 740, 1848, 2158
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 7 cut(s) 481, 852, 997, 1235, 1912, 2496, 2512
AcuI CTGAAG 2 cut(s) 11, 1155
AcvI CACGTG 1 cut(s) 953
AcyI GRCGYC 1 cut(s) 173
AfaI GTAC 6 cut(s) 731, 875, 1729, 1838, 2025, 2088
AfiI CCNNNNNNNGG 2 cut(s) 216, 2083
AhlI ACTAGT 1 cut(s) 1439
AjuI GAANNNNNNNTTGG 2 cut(s) 257, 289
Alw26I GTCTC 2 cut(s) 165, 1752
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 2 cut(s) 268, 2108
AoxI GGCC 4 cut(s) 207, 1323, 2155, 2353
ApeKI GCWGC 5 cut(s) 1010, 1553, 1556, 2345, 2348
ApoI RAATTY 7 cut(s) 481, 852, 997, 1235, 1912, 2496, 2512
Asp700I GAANNNNTTC 2 cut(s) 749, 2072
AspLEI GCGC 8 cut(s) 175, 217, 227, 489, 595, 1174, 1176, 2257
AspS9I GGNCC 1 cut(s) 2449
AsuHPI GGTGA 2 cut(s) 754, 1556
AsuII TTCGAA 1 cut(s) 692
AsuNHI GCTAGC 1 cut(s) 1006
AvaI CYCGRG 2 cut(s) 268, 2108
AvaII GGWCC 1 cut(s) 2449
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 1 cut(s) 333
BarI GAAGNNNNNNTAC 4 cut(s) 863, 895, 1641, 1673
BbrPI CACGTG 1 cut(s) 953
BbvCI CCTCAGC 1 cut(s) 2390
BbvI GCAGC 5 cut(s) 997, 1565, 1568, 2332, 2360
BccI CCATC 6 cut(s) 661, 730, 1180, 1510, 1982, 2053
BceAI ACGGC 1 cut(s) 212
BciVI GTATCC 1 cut(s) 240
BclI TGATCA 1 cut(s) 1311
BcoDI GTCTC 2 cut(s) 165, 1752
BcuI ACTAGT 1 cut(s) 1439
BfaI CTAG 9 cut(s) 164, 846, 1007, 1440, 1560, 1751, 1779, 1842, 2172
BfmI CTRYAG 3 cut(s) 880, 1930, 2346
BfoI RGCGCY 2 cut(s) 176, 228
BfuI GTATCC 1 cut(s) 240
BglII AGATCT 1 cut(s) 1872
BisI GCNGC 7 cut(s) 218, 1011, 1554, 1557, 2158, 2346, 2349
BlpI GCTNAGC 1 cut(s) 221
BlsI GCNGC 7 cut(s) 219, 1012, 1555, 1558, 2159, 2347, 2350
BmcAI AGTACT 1 cut(s) 731
Bme18I GGWCC 1 cut(s) 2449
BmeT110I CYCGRG 2 cut(s) 268, 2108
BmgT120I GGNCC 1 cut(s) 2449
BmiI GGNNCC 2 cut(s) 174, 1384
BmsI GCATC 9 cut(s) 331, 349, 447, 580, 658, 1748, 1945, 2197, 2219
BmtI GCTAGC 1 cut(s) 1010
BplI GAGNNNNNCTC 2 cut(s) 770, 802
BpmI CTGGAG 3 cut(s) 2117, 2289, 2400
Bpu10I CCTNAGC 1 cut(s) 2390
Bpu1102I GCTNAGC 1 cut(s) 221
Bpu14I TTCGAA 1 cut(s) 692
BpuEI CTTGAG 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 953
BsaHI GRCGYC 1 cut(s) 173
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 2083
Bse118I RCCGGY 1 cut(s) 1619
Bse1I ACTGG 1 cut(s) 1930
Bse3DI GCAATG 6 cut(s) 369, 500, 908, 1336, 1651, 2384
BseGI GGATG 4 cut(s) 595, 1191, 1201, 1993
BseLI CCNNNNNNNGG 2 cut(s) 216, 2083
BseMI GCAATG 6 cut(s) 369, 500, 908, 1336, 1651, 2384
BseMII CTCAG 5 cut(s) 212, 1263, 2250, 2381, 2481
BseNI ACTGG 1 cut(s) 1930
BsePI GCGCGC 1 cut(s) 1172
BseXI GCAGC 5 cut(s) 997, 1565, 1568, 2332, 2360
BsgI GTGCAG 5 cut(s) 776, 1268, 1305, 1500, 2172
Bsh1236I CGCG 3 cut(s) 217, 487, 1174
BshFI GGCC 4 cut(s) 209, 1325, 2157, 2355
BshNI GGYRCC 1 cut(s) 172
BsiHKCI CYCGRG 2 cut(s) 268, 2108
BsiSI CCGG 2 cut(s) 176, 1620
BslFI GGGAC 3 cut(s) 310, 616, 1795
BslI CCNNNNNNNGG 2 cut(s) 216, 2083
BsmAI GTCTC 2 cut(s) 165, 1752
BsmFI GGGAC 3 cut(s) 310, 616, 1795
BsmI GAATGC 4 cut(s) 397, 700, 1612, 2314
BsnI GGCC 4 cut(s) 209, 1325, 2157, 2355
BsoBI CYCGRG 2 cut(s) 268, 2108
Bsp119I TTCGAA 1 cut(s) 692
Bsp1286I GDGCHC 1 cut(s) 333
Bsp143I GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
Bsp1720I GCTNAGC 1 cut(s) 221
BspACI CCGC 5 cut(s) 217, 527, 740, 1848, 2158
BspANI GGCC 4 cut(s) 209, 1325, 2157, 2355
BspCNI CTCAG 5 cut(s) 213, 1264, 2251, 2382, 2480
BspFNI CGCG 3 cut(s) 217, 487, 1174
BspLI GGNNCC 2 cut(s) 174, 1384
BspMAI CTGCAG 1 cut(s) 2350
BspOI GCTAGC 1 cut(s) 1010
BspPI GGATC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 692
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 6 cut(s) 369, 500, 908, 1336, 1651, 2384
BsrFI RCCGGY 1 cut(s) 1619
BsrI ACTGG 1 cut(s) 1930
BssAI RCCGGY 1 cut(s) 1619
BssHII GCGCGC 1 cut(s) 1172
BssMI GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
BssNI GRCGYC 1 cut(s) 173
BstACI GRCGYC 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 953
BstBI TTCGAA 1 cut(s) 692
BstDEI CTNAG 6 cut(s) 221, 1272, 2161, 2259, 2390, 2467
BstF5I GGATG 4 cut(s) 595, 1191, 1201, 1993
BstFNI CGCG 3 cut(s) 217, 487, 1174
BstH2I RGCGCY 2 cut(s) 176, 228
BstHHI GCGC 8 cut(s) 175, 217, 227, 489, 595, 1174, 1176, 2257
BstKTI GATC 9 cut(s) 7, 892, 1090, 1314, 1599, 1707, 1875, 2095, 2557
BstMAI GTCTC 2 cut(s) 165, 1752
BstMBI GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
BstMWI GCNNNNNNNGC 5 cut(s) 100, 484, 754, 1396, 1616
BstNSI RCATGY 4 cut(s) 599, 1166, 1769, 1939
BstSFI CTRYAG 3 cut(s) 880, 1930, 2346
BstUI CGCG 3 cut(s) 217, 487, 1174
BstV1I GCAGC 5 cut(s) 997, 1565, 1568, 2332, 2360
BstX2I RGATCY 2 cut(s) 4, 1872
BstXI CCANNNNNNTGG 1 cut(s) 2003
BstYI RGATCY 2 cut(s) 4, 1872
BsuI GTATCC 1 cut(s) 240
BsuRI GGCC 4 cut(s) 209, 1325, 2157, 2355
BtsCI GGATG 4 cut(s) 595, 1191, 1201, 1993
BtsI GCAGTG 3 cut(s) 351, 496, 892
BtsIMutI CAGTG 6 cut(s) 15, 351, 496, 892, 1024, 1458
CfoI GCGC 8 cut(s) 175, 217, 227, 489, 595, 1174, 1176, 2257
Cfr10I RCCGGY 1 cut(s) 1619
Cfr13I GGNCC 1 cut(s) 2449
CseI GACGC 1 cut(s) 2119
Csp6I GTAC 6 cut(s) 730, 874, 1728, 1837, 2024, 2087
CviQI GTAC 6 cut(s) 730, 874, 1728, 1837, 2024, 2087
DdeI CTNAG 6 cut(s) 221, 1272, 2161, 2259, 2390, 2467
DinI GGCGCC 1 cut(s) 174
DpnI GATC 9 cut(s) 6, 891, 1089, 1313, 1598, 1706, 1874, 2094, 2556
DpnII GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
DraI TTTAAA 1 cut(s) 2511
Eco147I AGGCCT 2 cut(s) 209, 2355
Eco24I GRGCYC 1 cut(s) 333
Eco47I GGWCC 1 cut(s) 2449
Eco57I CTGAAG 2 cut(s) 11, 1155
Eco72I CACGTG 1 cut(s) 953
Eco88I CYCGRG 2 cut(s) 268, 2108
EcoRI GAATTC 3 cut(s) 481, 997, 1912
EcoT22I ATGCAT 2 cut(s) 910, 2212
EcoT38I GRGCYC 1 cut(s) 333
EgeI GGCGCC 1 cut(s) 174
EheI GGCGCC 1 cut(s) 174
FaqI GGGAC 3 cut(s) 310, 616, 1795
FbaI TGATCA 1 cut(s) 1311
Fnu4HI GCNGC 7 cut(s) 218, 1011, 1554, 1557, 2158, 2346, 2349
FokI GGATG 4 cut(s) 602, 1198, 1208, 2000
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 7 cut(s) 218, 1011, 1554, 1557, 2158, 2346, 2349
FspAI RTGCGCAY 1 cut(s) 594
FspBI CTAG 9 cut(s) 164, 846, 1007, 1440, 1560, 1751, 1779, 1842, 2172
FspI TGCGCA 1 cut(s) 594
GlaI GCGC 8 cut(s) 174, 216, 226, 488, 594, 1173, 1175, 2256
GluI GCNGC 7 cut(s) 218, 1011, 1554, 1557, 2158, 2346, 2349
GsuI CTGGAG 3 cut(s) 2117, 2289, 2400
HaeII RGCGCY 2 cut(s) 176, 228
HaeIII GGCC 4 cut(s) 209, 1325, 2157, 2355
HapII CCGG 2 cut(s) 176, 1620
HgaI GACGC 1 cut(s) 2119
HhaI GCGC 8 cut(s) 175, 217, 227, 489, 595, 1174, 1176, 2257
Hin1I GRCGYC 1 cut(s) 173
Hin6I GCGC 8 cut(s) 173, 215, 225, 487, 593, 1172, 1174, 2255
HinP1I GCGC 8 cut(s) 173, 215, 225, 487, 593, 1172, 1174, 2255
HincII GTYRAC 3 cut(s) 337, 1498, 2137
HindII GTYRAC 3 cut(s) 337, 1498, 2137
HindIII AAGCTT 3 cut(s) 746, 1156, 2069
HpaII CCGG 2 cut(s) 176, 1620
HphI GGTGA 2 cut(s) 754, 1556
Hpy166II GTNNAC 8 cut(s) 337, 769, 935, 1498, 1886, 2119, 2137, 2452
Hpy188I TCNGA 9 cut(s) 30, 264, 641, 861, 1135, 1208, 1631, 1681, 2470
Hpy188III TCNNGA 7 cut(s) 232, 431, 1380, 1702, 2096, 2371, 2552
Hpy8I GTNNAC 8 cut(s) 337, 769, 935, 1498, 1886, 2119, 2137, 2452
Hpy99I CGWCG 2 cut(s) 233, 2135
HpyAV CCTTC 7 cut(s) 35, 235, 343, 1067, 1130, 1255, 2150
HpyCH4IV ACGT 3 cut(s) 937, 952, 1626
HpyF10VI GCNNNNNNNGC 5 cut(s) 100, 484, 754, 1396, 1616
HpyF3I CTNAG 6 cut(s) 221, 1272, 2161, 2259, 2390, 2467
HpySE526I ACGT 3 cut(s) 937, 952, 1626
Hsp92I GRCGYC 1 cut(s) 173
HspAI GCGC 8 cut(s) 173, 215, 225, 487, 593, 1172, 1174, 2255
KasI GGCGCC 1 cut(s) 172
Ksp22I TGATCA 1 cut(s) 1311
Kzo9I GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
LmnI GCTCC 2 cut(s) 830, 2270
Lsp1109I GCAGC 5 cut(s) 997, 1565, 1568, 2332, 2360
LweI GCATC 9 cut(s) 331, 349, 447, 580, 658, 1748, 1945, 2197, 2219
MaeI CTAG 9 cut(s) 164, 846, 1007, 1440, 1560, 1751, 1779, 1842, 2172
MaeII ACGT 3 cut(s) 937, 952, 1626
MaeIII GTNAC 4 cut(s) 13, 1622, 1656, 1699
MalI GATC 9 cut(s) 6, 891, 1089, 1313, 1598, 1706, 1874, 2094, 2556
MboI GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
MboII GAAGA 5 cut(s) 1097, 1136, 2386, 2549, 2588
MflI RGATCY 2 cut(s) 4, 1872
MhlI GDGCHC 1 cut(s) 333
Mly113I GGCGCC 1 cut(s) 173
MlyI GAGTC 3 cut(s) 167, 779, 2195
MmeI TCCRAC 2 cut(s) 1996, 2020
Mph1103I ATGCAT 2 cut(s) 910, 2212
MroXI GAANNNNTTC 2 cut(s) 749, 2072
MseI TTAA 9 cut(s) 1220, 1239, 1257, 1878, 2247, 2439, 2510, 2528, 2587
MslI CAYNNNNRTG 5 cut(s) 558, 1770, 1944, 1950, 2215
MspI CCGG 2 cut(s) 176, 1620
Mva1269I GAATGC 4 cut(s) 397, 700, 1612, 2314
MvnI CGCG 3 cut(s) 217, 487, 1174
MwoI GCNNNNNNNGC 5 cut(s) 100, 484, 754, 1396, 1616
NarI GGCGCC 1 cut(s) 173
NdeII GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
NheI GCTAGC 1 cut(s) 1006
NlaIV GGNNCC 2 cut(s) 174, 1384
NmuCI GTSAC 2 cut(s) 13, 1699
NsbI TGCGCA 1 cut(s) 594
NsiI ATGCAT 2 cut(s) 910, 2212
NspI RCATGY 4 cut(s) 599, 1166, 1769, 1939
NspV TTCGAA 1 cut(s) 692
PaeI GCATGC 3 cut(s) 1166, 1769, 1939
PauI GCGCGC 1 cut(s) 1172
PceI AGGCCT 2 cut(s) 209, 2355
PctI GAATGC 4 cut(s) 397, 700, 1612, 2314
PdmI GAANNNNTTC 2 cut(s) 749, 2072
PfeI GAWTC 7 cut(s) 400, 662, 808, 1077, 1376, 1564, 2486
PflMI CCANNNNNTGG 1 cut(s) 2083
PkrI GCNGC 7 cut(s) 219, 1012, 1555, 1558, 2159, 2347, 2350
PleI GAGTC 3 cut(s) 166, 779, 2194
PluTI GGCGCC 1 cut(s) 176
PmaCI CACGTG 1 cut(s) 953
PmlI CACGTG 1 cut(s) 953
PpsI GAGTC 3 cut(s) 166, 779, 2194
Ppu21I YACGTR 1 cut(s) 953
PspCI CACGTG 1 cut(s) 953
PspN4I GGNNCC 2 cut(s) 174, 1384
PspPI GGNCC 1 cut(s) 2449
PstI CTGCAG 1 cut(s) 2350
PsuI RGATCY 2 cut(s) 4, 1872
PteI GCGCGC 1 cut(s) 1172
RsaI GTAC 6 cut(s) 731, 875, 1729, 1838, 2025, 2088
RsaNI GTAC 6 cut(s) 730, 874, 1728, 1837, 2024, 2087
RseI CAYNNNNRTG 5 cut(s) 558, 1770, 1944, 1950, 2215
SaqAI TTAA 9 cut(s) 1220, 1239, 1257, 1878, 2247, 2439, 2510, 2528, 2587
SatI GCNGC 7 cut(s) 218, 1011, 1554, 1557, 2158, 2346, 2349
Sau3AI GATC 9 cut(s) 4, 889, 1087, 1311, 1596, 1704, 1872, 2092, 2554
Sau96I GGNCC 1 cut(s) 2449
ScaI AGTACT 1 cut(s) 731
SchI GAGTC 3 cut(s) 167, 779, 2195
SduI GDGCHC 1 cut(s) 333
SfaNI GCATC 9 cut(s) 331, 349, 447, 580, 658, 1748, 1945, 2197, 2219
SfcI CTRYAG 3 cut(s) 880, 1930, 2346
SfoI GGCGCC 1 cut(s) 174
SfuI TTCGAA 1 cut(s) 692
SinI GGWCC 1 cut(s) 2449
SmiMI CAYNNNNRTG 5 cut(s) 558, 1770, 1944, 1950, 2215
SmlI CTYRAG 1 cut(s) 203
SmoI CTYRAG 1 cut(s) 203
SpeI ACTAGT 1 cut(s) 1439
SphI GCATGC 3 cut(s) 1166, 1769, 1939
SseBI AGGCCT 2 cut(s) 209, 2355
SsiI CCGC 5 cut(s) 217, 527, 740, 1848, 2158
SspDI GGCGCC 1 cut(s) 172
SspMI CTAG 9 cut(s) 164, 846, 1007, 1440, 1560, 1751, 1779, 1842, 2172
StuI AGGCCT 2 cut(s) 209, 2355
TaiI ACGT 3 cut(s) 940, 955, 1629
TaqI TCGA 8 cut(s) 231, 254, 430, 665, 692, 1803, 2184, 2242
TatI WGTACW 3 cut(s) 729, 873, 2023
TauI GCSGC 2 cut(s) 220, 2160
TfiI GAWTC 7 cut(s) 400, 662, 808, 1077, 1376, 1564, 2486
Tru1I TTAA 9 cut(s) 1220, 1239, 1257, 1878, 2247, 2439, 2510, 2528, 2587
Tru9I TTAA 9 cut(s) 1220, 1239, 1257, 1878, 2247, 2439, 2510, 2528, 2587
TscAI CASTG 6 cut(s) 22, 351, 496, 892, 1024, 1458
TseFI GTSAC 2 cut(s) 13, 1699
TseI GCWGC 5 cut(s) 1010, 1553, 1556, 2345, 2348
Tsp45I GTSAC 2 cut(s) 13, 1699
TspRI CASTG 6 cut(s) 22, 351, 496, 892, 1024, 1458
Van91I CCANNNNNTGG 1 cut(s) 2083
VpaK11BI GGWCC 1 cut(s) 2449
XapI RAATTY 7 cut(s) 481, 852, 997, 1235, 1912, 2496, 2512
XceI RCATGY 4 cut(s) 599, 1166, 1769, 1939
XcmI CCANNNNNNNNNTGG 1 cut(s) 2424
XmnI GAANNNNTTC 2 cut(s) 749, 2072
XspI CTAG 9 cut(s) 164, 846, 1007, 1440, 1560, 1751, 1779, 1842, 2172
ZrmI AGTACT 1 cut(s) 731
Zsp2I ATGCAT 2 cut(s) 910, 2212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.