Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0011259

Physical Location & Seq

Genomic Coordinates Forward (+)

11687874 .. 11694203

Gene Structure 6330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g17830.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTATTGGGTAATAGCAGACAGAGGGCTTGAGCTGTTATCGACAACTTTCCTGTTTAGTTTCCTGGTCGCATTGGTACTTTATGCCGTTGGCTGTAAATCAAGCAACCGCTGTTCTTCCTTAAAGCCTCATGTGTCTGGGAATCTTCTAGATGACTGGTGGTTTGGAATACAGCTGAACCCTCAGTTTATGGGAATTGACCTCAAATTTTTCTTTGTTAGAGCTGGAATGATGGGCTGGCTATTTATCAACCTTTCAATTTTCGCAAGAAGTGTCCAAGAGGGAACGATGAGTCAATCAATGGTCCTCTTCCAGTTATTCTGTGCGTTGTACATTCTGGACTACTTTATTCATGAGGAGTACATGACCTCCACATGGGACATAATTGCTGAGAGATTGGGCTTTATGCTGGTATTTGGAGATCTAGTGTGGATTCCTTTCACTTTCAGCATCCAGGGCTGGTGGCTTCTGAGTAACAAGGTTGAGTTAAGAACAGCCGCTGTCATTGCAAATTGCTTCACTTTTGTGATTGGGTACCTAGTATTTAGAGGAGCCAACAAGCAAAAGCATGTATTTAAGAAAGATCCCAAAGCACCTATATGGGGTAAGCCTCCAAGGGTCATTGGGGGTAAATTGCTTGCTTCTGGTTATTGGGGAATCGCAAGACACTGTAACTACCTTGGGGACTTGTTACTTGCCCTGTCTTTTAGTTTACCTTGTGGGATGAGTTCTCCAGTTCCATATTTCTACCCGATTTATCTTCTCATTCTGCTTATTTGGAGAGAAAGAAGAGATGAAGCTCGCTGTGCCGAGAAGTATAGGGAGATCTGGGCAGAATACCGCAGACTTGTTCCATGGAGAATATTACCCTATGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016627 GO:0016628 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0036094 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050613 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:0098827 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

294

Amino Acids

34.12

Weight (kDa)

9.11

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ERG4_ERG24	PF01222	4 - 293	4.1e-80	Ergosterol biosynthesis ERG4/ERG24 family
DUF1295	PF06966	132 - 240	9.2e-07	Protein of unknown function (DUF1295)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52940
fragaria_vesca	FvH4_6g17830 FvH4_6g17830
malus_domestica	MD12G1017500.v1.1 MD14G1015200.v1.1
prunus_persica	Prupe.7G118200_v2.0.a1 Prupe.7G118200_v2.0.a1 Prupe.8G104900_v2.0.a1
pyrus_communis	pycom12g01410 pycom14g01270
rosa_chinensis	RchiOBHm_Chr3g0472081
rosa_laevigata	RLG00000024106
rosa_multiflora	Rmu_sc0002532.1_g000014
rosa_roxburghii	Rroxscaffold_6G00409260
rosa_rugosa	Rorug03G0122000
rosa_samantha	Rh3AG173800 Rh3BG199200 Rh3CG197700 Rh3DG175300
rosa_wichuraiana	Rw3G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	534
AciI	CCGC	3 cut(s)	109, 498, 841
AclWI	GGATC	1 cut(s)	578
AcsI	RAATTY	1 cut(s)	206
AfaI	GTAC	4 cut(s)	78, 332, 362, 536
AfiI	CCNNNNNNNGG	2 cut(s)	375, 602
AgsI	TTSAA	1 cut(s)	258
AjnI	CCWGG	2 cut(s)	63, 453
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	4 cut(s)	34, 175, 224, 800
AluI	AGCT	4 cut(s)	34, 175, 224, 800
AlwI	GGATC	1 cut(s)	578
AlwNI	CAGNNNCTG	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	206
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp718I	GGTACC	1 cut(s)	534
AspS9I	GGNCC	1 cut(s)	304
AvaII	GGWCC	1 cut(s)	304
BanI	GGYRCC	1 cut(s)	534
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	65, 455
BfaI	CTAG	3 cut(s)	149, 425, 539
BglII	AGATCT	2 cut(s)	421, 825
BisI	GCNGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	499
Bme1390I	CCNGG	2 cut(s)	65, 455
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	536, 553
BmrFI	CCNGG	2 cut(s)	65, 455
BmsI	GCATC	1 cut(s)	459
BpmI	CTGGAG	1 cut(s)	717
BpuEI	CTTGAG	1 cut(s)	50
BsaJI	CCNNGG	4 cut(s)	454, 614, 679, 854
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 411, 441
Bsc4I	CCNNNNNNNGG	2 cut(s)	375, 602
Bse1I	ACTGG	3 cut(s)	161, 313, 734
Bse3DI	GCAATG	1 cut(s)	504
BseBI	CCWGG	2 cut(s)	65, 455
BseDI	CCNNGG	4 cut(s)	454, 614, 679, 854
BseGI	GGATG	2 cut(s)	450, 729
BseLI	CCNNNNNNNGG	2 cut(s)	375, 602
BseMI	GCAATG	1 cut(s)	504
BseMII	CTCAG	3 cut(s)	197, 381, 461
BseNI	ACTGG	3 cut(s)	161, 313, 734
BseRI	GAGGAG	2 cut(s)	371, 564
BshNI	GGYRCC	1 cut(s)	534
BslFI	GGGAC	2 cut(s)	392, 698
BslI	CCNNNNNNNGG	2 cut(s)	375, 602
BsmFI	GGGAC	2 cut(s)	392, 698
Bsp1407I	TGTACA	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	421, 583, 825
Bsp19I	CCATGG	1 cut(s)	854
BspACI	CCGC	3 cut(s)	109, 498, 841
BspCNI	CTCAG	3 cut(s)	196, 382, 462
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	2 cut(s)	536, 553
BspPI	GGATC	1 cut(s)	578
BspT107I	GGYRCC	1 cut(s)	534
BsrDI	GCAATG	1 cut(s)	504
BsrGI	TGTACA	1 cut(s)	330
BsrI	ACTGG	3 cut(s)	161, 313, 734
BssECI	CCNNGG	4 cut(s)	454, 614, 679, 854
BssMI	GATC	3 cut(s)	421, 583, 825
BssT1I	CCWWGG	3 cut(s)	614, 679, 854
Bst2UI	CCWGG	2 cut(s)	65, 455
Bst4CI	ACNGT	1 cut(s)	671
Bst6I	CTCTTC	2 cut(s)	314, 784
BstAUI	TGTACA	1 cut(s)	330
BstC8I	GCNNGC	3 cut(s)	239, 639, 802
BstDEI	CTNAG	3 cut(s)	183, 390, 470
BstDSI	CCRYGG	1 cut(s)	854
BstF5I	GGATG	2 cut(s)	450, 729
BstKTI	GATC	3 cut(s)	424, 586, 828
BstMBI	GATC	3 cut(s)	421, 583, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	456, 506, 806
BstNI	CCWGG	2 cut(s)	65, 455
BstNSI	RCATGY	1 cut(s)	572
BstSCI	CCNGG	2 cut(s)	63, 453
BstX2I	RGATCY	3 cut(s)	421, 583, 825
BstYI	RGATCY	3 cut(s)	421, 583, 825
BtgI	CCRYGG	1 cut(s)	854
BtsCI	GGATG	2 cut(s)	450, 729
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	3 cut(s)	239, 639, 802
CaiI	CAGNNNCTG	1 cut(s)	500
CciI	TCATGA	1 cut(s)	352
Cfr13I	GGNCC	1 cut(s)	304
Csp6I	GTAC	4 cut(s)	77, 331, 361, 535
CviAII	CATG	6 cut(s)	131, 353, 364, 375, 569, 855
CviQI	GTAC	4 cut(s)	77, 331, 361, 535
DdeI	CTNAG	3 cut(s)	183, 390, 470
DpnI	GATC	3 cut(s)	423, 585, 827
DpnII	GATC	3 cut(s)	421, 583, 825
Eam1104I	CTCTTC	2 cut(s)	314, 784
EarI	CTCTTC	2 cut(s)	314, 784
Eco130I	CCWWGG	3 cut(s)	614, 679, 854
Eco47I	GGWCC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	63, 453
EcoT14I	CCWWGG	3 cut(s)	614, 679, 854
ErhI	CCWWGG	3 cut(s)	614, 679, 854
FaeI	CATG	6 cut(s)	134, 356, 367, 378, 572, 858
FaqI	GGGAC	2 cut(s)	392, 698
FatI	CATG	6 cut(s)	130, 352, 363, 374, 568, 854
Fnu4HI	GCNGC	1 cut(s)	498
FokI	GGATG	2 cut(s)	437, 736
Fsp4HI	GCNGC	1 cut(s)	498
FspBI	CTAG	3 cut(s)	149, 425, 539
GluI	GCNGC	1 cut(s)	498
GsuI	CTGGAG	1 cut(s)	717
Hin1II	CATG	6 cut(s)	134, 356, 367, 378, 572, 858
HinfI	GANTC	4 cut(s)	142, 292, 433, 657
Hpy166II	GTNNAC	1 cut(s)	713
Hpy188I	TCNGA	1 cut(s)	471
Hpy188III	TCNNGA	3 cut(s)	149, 338, 353
Hpy8I	GTNNAC	1 cut(s)	713
HpyCH4III	ACNGT	1 cut(s)	671
HpyCH4V	TGCA	1 cut(s)	509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	456, 506, 806
HpyF3I	CTNAG	3 cut(s)	183, 390, 470
Hsp92II	CATG	6 cut(s)	134, 356, 367, 378, 572, 858
KpnI	GGTACC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	421, 583, 825
LmnI	GCTCC	1 cut(s)	551
LweI	GCATC	1 cut(s)	459
MaeI	CTAG	3 cut(s)	149, 425, 539
MaeIII	GTNAC	3 cut(s)	473, 671, 690
MalI	GATC	3 cut(s)	423, 585, 827
MboI	GATC	3 cut(s)	421, 583, 825
MboII	GAAGA	5 cut(s)	108, 137, 301, 752, 801
MflI	RGATCY	3 cut(s)	421, 583, 825
MluCI	AATT	6 cut(s)	195, 206, 258, 384, 511, 632
MlyI	GAGTC	1 cut(s)	301
MseI	TTAA	4 cut(s)	122, 488, 576, 880
MslI	CAYNNNNRTG	2 cut(s)	524, 598
MspA1I	CMGCKG	3 cut(s)	111, 175, 500
MspR9I	CCNGG	2 cut(s)	65, 455
MvaI	CCWGG	2 cut(s)	65, 455
MwoI	GCNNNNNNNGC	3 cut(s)	456, 506, 806
NcoI	CCATGG	1 cut(s)	854
NdeII	GATC	3 cut(s)	421, 583, 825
NlaIII	CATG	6 cut(s)	134, 356, 367, 378, 572, 858
NlaIV	GGNNCC	2 cut(s)	536, 553
NmeAIII	GCCGAG	1 cut(s)	835
NspI	RCATGY	1 cut(s)	572
OliI	CACNNNNGTG	1 cut(s)	524
PagI	TCATGA	1 cut(s)	352
PfeI	GAWTC	3 cut(s)	142, 433, 657
PkrI	GCNGC	1 cut(s)	499
PleI	GAGTC	1 cut(s)	300
PpsI	GAGTC	1 cut(s)	300
Psp6I	CCWGG	2 cut(s)	63, 453
PspGI	CCWGG	2 cut(s)	63, 453
PspN4I	GGNNCC	2 cut(s)	536, 553
PspPI	GGNCC	1 cut(s)	304
PstNI	CAGNNNCTG	1 cut(s)	500
PsuI	RGATCY	3 cut(s)	421, 583, 825
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	78, 332, 362, 536
RsaNI	GTAC	4 cut(s)	77, 331, 361, 535
RseI	CAYNNNNRTG	2 cut(s)	524, 598
SaqAI	TTAA	4 cut(s)	122, 488, 576, 880
SatI	GCNGC	1 cut(s)	498
Sau3AI	GATC	3 cut(s)	421, 583, 825
Sau96I	GGNCC	1 cut(s)	304
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	65, 455
SfaNI	GCATC	1 cut(s)	459
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	2 cut(s)	524, 598
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
Sse9I	AATT	6 cut(s)	195, 206, 258, 384, 511, 632
SsiI	CCGC	3 cut(s)	109, 498, 841
SspI	AATATT	1 cut(s)	864
SspMI	CTAG	3 cut(s)	149, 425, 539
StyD4I	CCNGG	2 cut(s)	63, 453
StyI	CCWWGG	3 cut(s)	614, 679, 854
TaaI	ACNGT	1 cut(s)	671
TaqI	TCGA	1 cut(s)	41
TasI	AATT	6 cut(s)	195, 206, 258, 384, 511, 632
TatI	WGTACW	2 cut(s)	330, 360
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	3 cut(s)	142, 433, 657
Tru1I	TTAA	4 cut(s)	122, 488, 576, 880
Tru9I	TTAA	4 cut(s)	122, 488, 576, 880
TscAI	CASTG	1 cut(s)	674
TspDTI	ATGAA	2 cut(s)	341, 810
TspRI	CASTG	1 cut(s)	674
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	206
XbaI	TCTAGA	1 cut(s)	148
XceI	RCATGY	1 cut(s)	572
XspI	CTAG	3 cut(s)	149, 425, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.