Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0011259

Physical Location & Seq

Genomic Coordinates Forward (+)

13575662 .. 13580954

Gene Structure 5293 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G104900.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATCTGGGTCATCTTCTCCACCTCCTAATTCCCTCATGCAACTCTGTTGTTATACTCGCATTGTTCTTTGCTTACTTGGCCATTGCCGGATCTATACTGCCCGGCAAAGTTGTTCCCGGAGCCACCTTACCAGATGGCTATCGTCTTCATTATCGCTGCAATGGTCTGCTATCACTTCTGTTGCTGATTGGGCTTCTTGGGTTTGGTGCTAAGATGGATTTCGTATCACTTACTGCAATATCAGACAGAGGATTTGAGCTGTTATCAACAACTTTTCTGTTTAGTGTTCTGGTCACACTGGTACTTTACGCTGCTGGCTGCAAGTCGAGCAACCGAGGTTCTTCCCTAAAGCCTCATGTGACAGGGAACCTTCTCCATGACTGGTGGTTTGGAATACAGCTTAATCCTCAGTTTATGGGCATCGACCTCAAATTTTTCTTTGTTAGAGCTGGAATGATGGGCTGGCTTTTTATCAACCTTTCGGTTCTTGTGAGAAGTATCCAAGATGGCACCTTGAGTCAATCAATGATCCTCTTCCAGTTGTTCTGTGTGTTATACATCCTGGACTACTTTTTTCATGAGGAGTACATGACCTCCACGTGGGACATAATTGCAGAGAGACTGGGTTTCATGCTTGTATTTGGAGATCTAGTGTGGATTCCTTTCACTTTTAGCATCCAGGGATGGTGGCTTCTGAGTAACAACGTGGAGTTAGGAACAGCCGCTGTTGTAGCAAATTGTTTGACTTTTCTGATCGGGTACATGGTATTCAGAGGAGCCAACAAGCAAAAGCATGTCTTTAAGAAGAATCCTAAAGCACCTATATGGGGTAGGCCTGCAAGGGTCATTGGGGGAAAGTTGCTTGCTTCTGGTTATTGGGGAATCGCAAGGCACTGTAATTACCTTGGGGACTTGTTGCTTGCACTGTCTTTTAGTTTACCCTGTGGAATAAGTTCCCCAGTTCCATACTTCTATCCAATTTATCTTCTCATTCTGCTCATACGGAGAGAAAGAAGAGATGAAGCTCGTTGTGCAGAGAAGTACAAAGAAATCTGGGCAGAATACCGCAGGCTTGTCCCATGGAGAATATTGCCTTATGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016627 GO:0016628 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0036094 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050613 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:0098827 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

370

Amino Acids

41.83

Weight (kDa)

9.2

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52940
fragaria_vesca	FvH4_6g17830 FvH4_6g17830
malus_domestica	MD12G1017500.v1.1 MD14G1015200.v1.1
prunus_persica	Prupe.7G118200_v2.0.a1 Prupe.7G118200_v2.0.a1 Prupe.8G104900_v2.0.a1
pyrus_communis	pycom12g01410 pycom14g01270
rosa_chinensis	RchiOBHm_Chr3g0472081
rosa_laevigata	RLG00000024106
rosa_multiflora	Rmu_sc0002532.1_g000014
rosa_roxburghii	Rroxscaffold_6G00409260
rosa_rugosa	Rorug03G0122000
rosa_samantha	Rh3AG173800 Rh3BG199200 Rh3CG197700 Rh3DG175300
rosa_wichuraiana	Rw3G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AciI	CCGC	2 cut(s)	726, 1069
AclWI	GGATC	3 cut(s)	12, 100, 526
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	1 cut(s)	434
AcvI	CACGTG	1 cut(s)	603
AfaI	GTAC	4 cut(s)	306, 590, 764, 1046
AfiI	CCNNNNNNNGG	2 cut(s)	603, 830
AjnI	CCWGG	2 cut(s)	564, 681
AluBI	AGCT	4 cut(s)	262, 403, 452, 1028
AluI	AGCT	4 cut(s)	262, 403, 452, 1028
Alw26I	GTCTC	1 cut(s)	616
AlwI	GGATC	3 cut(s)	12, 100, 526
AlwNI	CAGNNNCTG	1 cut(s)	728
AoxI	GGCC	2 cut(s)	81, 836
ApeKI	GCWGC	3 cut(s)	159, 314, 321
ApoI	RAATTY	1 cut(s)	434
ArsI	GACNNNNNNTTYG	4 cut(s)	239, 271, 374, 406
Asp700I	GAANNNNTTC	1 cut(s)	955
AsuC2I	CCSGG	2 cut(s)	105, 120
BalI	TGGCCA	1 cut(s)	83
BanI	GGYRCC	1 cut(s)	512
BbrPI	CACGTG	1 cut(s)	603
BbsI	GAAGAC	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	146, 301, 308
BccI	CCATC	5 cut(s)	131, 211, 454, 503, 681
BciT130I	CCWGG	2 cut(s)	566, 683
BciVI	GTATCC	1 cut(s)	512
BcnI	CCSGG	2 cut(s)	105, 120
BcoDI	GTCTC	1 cut(s)	616
BfaI	CTAG	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	512
BglII	AGATCT	1 cut(s)	649
BisI	GCNGC	4 cut(s)	160, 315, 322, 726
BlsI	GCNGC	4 cut(s)	161, 316, 323, 727
Bme1390I	CCNGG	4 cut(s)	105, 120, 566, 683
BmiI	GGNNCC	4 cut(s)	124, 371, 514, 781
BmrFI	CCNGG	4 cut(s)	105, 120, 566, 683
BmrI	ACTGGG	2 cut(s)	635, 956
BmsI	GCATC	2 cut(s)	432, 687
BmuI	ACTGGG	2 cut(s)	635, 956
BpiI	GAAGAC	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	538
BpuMI	CCSGG	2 cut(s)	105, 120
BsaAI	YACGTR	1 cut(s)	603
BsaBI	GATNNNNATC	1 cut(s)	141
BsaJI	CCNNGG	4 cut(s)	337, 682, 907, 1082
BsaXI	ACNNNNNCTCC	4 cut(s)	581, 611, 639, 669
Bsc4I	CCNNNNNNNGG	2 cut(s)	603, 830
Bse1I	ACTGG	5 cut(s)	306, 389, 541, 630, 962
Bse3DI	GCAATG	2 cut(s)	84, 169
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	2 cut(s)	566, 683
BseDI	CCNNGG	4 cut(s)	337, 682, 907, 1082
BseGI	GGATG	3 cut(s)	561, 678, 692
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	2 cut(s)	603, 830
BseMI	GCAATG	2 cut(s)	84, 169
BseMII	CTCAG	2 cut(s)	425, 689
BseNI	ACTGG	5 cut(s)	306, 389, 541, 630, 962
BseRI	GAGGAG	2 cut(s)	599, 792
BseXI	GCAGC	3 cut(s)	146, 301, 308
BsgI	GTGCAG	1 cut(s)	1056
BshFI	GGCC	2 cut(s)	83, 838
BshNI	GGYRCC	1 cut(s)	512
BsiSI	CCGG	3 cut(s)	90, 105, 120
BslFI	GGGAC	3 cut(s)	620, 926, 1064
BslI	CCNNNNNNNGG	2 cut(s)	603, 830
BsmAI	GTCTC	1 cut(s)	616
BsmFI	GGGAC	3 cut(s)	620, 926, 1064
BsnI	GGCC	2 cut(s)	83, 838
Bsp143I	GATC	5 cut(s)	4, 92, 531, 649, 756
Bsp19I	CCATGG	1 cut(s)	1082
BspACI	CCGC	2 cut(s)	726, 1069
BspANI	GGCC	2 cut(s)	83, 838
BspCNI	CTCAG	2 cut(s)	424, 690
BspHI	TCATGA	1 cut(s)	580
BspLI	GGNNCC	4 cut(s)	124, 371, 514, 781
BspPI	GGATC	3 cut(s)	12, 100, 526
BspT107I	GGYRCC	1 cut(s)	512
BsrDI	GCAATG	2 cut(s)	84, 169
BsrI	ACTGG	5 cut(s)	306, 389, 541, 630, 962
BssECI	CCNNGG	4 cut(s)	337, 682, 907, 1082
BssMI	GATC	5 cut(s)	4, 92, 531, 649, 756
BssT1I	CCWWGG	2 cut(s)	907, 1082
Bst2UI	CCWGG	2 cut(s)	566, 683
Bst4CI	ACNGT	2 cut(s)	899, 930
Bst6I	CTCTTC	2 cut(s)	542, 1012
BstBAI	YACGTR	1 cut(s)	603
BstC8I	GCNNGC	6 cut(s)	319, 467, 840, 867, 924, 1073
BstDEI	CTNAG	3 cut(s)	213, 411, 698
BstDSI	CCRYGG	1 cut(s)	1082
BstF5I	GGATG	3 cut(s)	561, 678, 692
BstKTI	GATC	5 cut(s)	7, 95, 534, 652, 759
BstMAI	GTCTC	1 cut(s)	616
BstMBI	GATC	5 cut(s)	4, 92, 531, 649, 756
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 193, 330, 734, 1034
BstNI	CCWGG	2 cut(s)	566, 683
BstNSI	RCATGY	1 cut(s)	800
BstSCI	CCNGG	4 cut(s)	103, 118, 564, 681
BstV1I	GCAGC	3 cut(s)	146, 301, 308
BstV2I	GAAGAC	1 cut(s)	140
BstX2I	RGATCY	3 cut(s)	4, 92, 649
BstYI	RGATCY	3 cut(s)	4, 92, 649
BsuI	GTATCC	1 cut(s)	512
BsuRI	GGCC	2 cut(s)	83, 838
BtgI	CCRYGG	1 cut(s)	1082
BtsCI	GGATG	3 cut(s)	561, 678, 692
BtsIMutI	CAGTG	3 cut(s)	299, 895, 926
Cac8I	GCNNGC	6 cut(s)	319, 467, 840, 867, 924, 1073
CaiI	CAGNNNCTG	1 cut(s)	728
CciI	TCATGA	1 cut(s)	580
Csp6I	GTAC	4 cut(s)	305, 589, 763, 1045
CviAII	CATG	9 cut(s)	39, 359, 380, 581, 592, 634, 766, 797, 1083
CviQI	GTAC	4 cut(s)	305, 589, 763, 1045
DdeI	CTNAG	3 cut(s)	213, 411, 698
DpnI	GATC	5 cut(s)	6, 94, 533, 651, 758
DpnII	GATC	5 cut(s)	4, 92, 531, 649, 756
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	542, 1012
EarI	CTCTTC	2 cut(s)	542, 1012
Eco130I	CCWWGG	2 cut(s)	907, 1082
Eco147I	AGGCCT	1 cut(s)	838
Eco72I	CACGTG	1 cut(s)	603
EcoRII	CCWGG	2 cut(s)	564, 681
EcoT14I	CCWWGG	2 cut(s)	907, 1082
ErhI	CCWWGG	2 cut(s)	907, 1082
FaeI	CATG	9 cut(s)	42, 362, 383, 584, 595, 637, 769, 800, 1086
FalI	AAGNNNNNCTT	2 cut(s)	785, 817
FaqI	GGGAC	3 cut(s)	620, 926, 1064
FatI	CATG	9 cut(s)	38, 358, 379, 580, 591, 633, 765, 796, 1082
Fnu4HI	GCNGC	4 cut(s)	160, 315, 322, 726
FokI	GGATG	3 cut(s)	548, 665, 699
Fsp4HI	GCNGC	4 cut(s)	160, 315, 322, 726
FspBI	CTAG	1 cut(s)	653
GluI	GCNGC	4 cut(s)	160, 315, 322, 726
HaeIII	GGCC	2 cut(s)	83, 838
HapII	CCGG	3 cut(s)	90, 105, 120
Hin1II	CATG	9 cut(s)	42, 362, 383, 584, 595, 637, 769, 800, 1086
HinfI	GANTC	4 cut(s)	520, 661, 811, 885
HpaII	CCGG	3 cut(s)	90, 105, 120
Hpy166II	GTNNAC	1 cut(s)	941
Hpy188I	TCNGA	4 cut(s)	247, 699, 756, 776
Hpy188III	TCNNGA	1 cut(s)	581
Hpy8I	GTNNAC	1 cut(s)	941
HpyAV	CCTTC	1 cut(s)	383
HpyCH4III	ACNGT	2 cut(s)	899, 930
HpyCH4IV	ACGT	2 cut(s)	602, 708
HpyCH4V	TGCA	8 cut(s)	42, 162, 239, 324, 617, 842, 926, 1037
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 193, 330, 734, 1034
HpyF3I	CTNAG	3 cut(s)	213, 411, 698
HpySE526I	ACGT	2 cut(s)	602, 708
Hsp92II	CATG	9 cut(s)	42, 362, 383, 584, 595, 637, 769, 800, 1086
Kzo9I	GATC	5 cut(s)	4, 92, 531, 649, 756
LmnI	GCTCC	2 cut(s)	122, 779
Lsp1109I	GCAGC	3 cut(s)	146, 301, 308
LweI	GCATC	2 cut(s)	432, 687
MaeI	CTAG	1 cut(s)	653
MaeII	ACGT	2 cut(s)	602, 708
MaeIII	GTNAC	3 cut(s)	295, 361, 701
MalI	GATC	5 cut(s)	6, 94, 533, 651, 758
MboI	GATC	5 cut(s)	4, 92, 531, 649, 756
MboII	GAAGA	7 cut(s)	8, 140, 336, 529, 820, 980, 1029
MflI	RGATCY	3 cut(s)	4, 92, 649
MlsI	TGGCCA	1 cut(s)	83
MluCI	AATT	6 cut(s)	30, 434, 612, 739, 901, 981
MluNI	TGGCCA	1 cut(s)	83
MlyI	GAGTC	1 cut(s)	529
Mox20I	TGGCCA	1 cut(s)	83
MroXI	GAANNNNTTC	1 cut(s)	955
MscI	TGGCCA	1 cut(s)	83
MseI	TTAA	3 cut(s)	405, 804, 1108
MslI	CAYNNNNRTG	1 cut(s)	826
Msp20I	TGGCCA	1 cut(s)	83
MspA1I	CMGCKG	1 cut(s)	728
MspI	CCGG	3 cut(s)	90, 105, 120
MspR9I	CCNGG	4 cut(s)	105, 120, 566, 683
MvaI	CCWGG	2 cut(s)	566, 683
MwoI	GCNNNNNNNGC	5 cut(s)	80, 193, 330, 734, 1034
NciI	CCSGG	2 cut(s)	105, 120
NcoI	CCATGG	1 cut(s)	1082
NdeII	GATC	5 cut(s)	4, 92, 531, 649, 756
NlaIII	CATG	9 cut(s)	42, 362, 383, 584, 595, 637, 769, 800, 1086
NlaIV	GGNNCC	4 cut(s)	124, 371, 514, 781
NmuCI	GTSAC	2 cut(s)	295, 361
NspI	RCATGY	1 cut(s)	800
PagI	TCATGA	1 cut(s)	580
PceI	AGGCCT	1 cut(s)	838
PdmI	GAANNNNTTC	1 cut(s)	955
PfeI	GAWTC	3 cut(s)	661, 811, 885
PfoI	TCCNGGA	2 cut(s)	118, 564
PkrI	GCNGC	4 cut(s)	161, 316, 323, 727
PleI	GAGTC	1 cut(s)	528
PmaCI	CACGTG	1 cut(s)	603
PmlI	CACGTG	1 cut(s)	603
PpsI	GAGTC	1 cut(s)	528
Ppu21I	YACGTR	1 cut(s)	603
Psp6I	CCWGG	2 cut(s)	564, 681
PspCI	CACGTG	1 cut(s)	603
PspGI	CCWGG	2 cut(s)	564, 681
PspN4I	GGNNCC	4 cut(s)	124, 371, 514, 781
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	3 cut(s)	4, 92, 649
RsaI	GTAC	4 cut(s)	306, 590, 764, 1046
RsaNI	GTAC	4 cut(s)	305, 589, 763, 1045
RseI	CAYNNNNRTG	1 cut(s)	826
SaqAI	TTAA	3 cut(s)	405, 804, 1108
SatI	GCNGC	4 cut(s)	160, 315, 322, 726
Sau3AI	GATC	5 cut(s)	4, 92, 531, 649, 756
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	4 cut(s)	105, 120, 566, 683
SfaNI	GCATC	2 cut(s)	432, 687
SmiMI	CAYNNNNRTG	1 cut(s)	826
SmlI	CTYRAG	1 cut(s)	517
SmoI	CTYRAG	1 cut(s)	517
Sse9I	AATT	6 cut(s)	30, 434, 612, 739, 901, 981
SseBI	AGGCCT	1 cut(s)	838
SsiI	CCGC	2 cut(s)	726, 1069
SspI	AATATT	1 cut(s)	1092
SspMI	CTAG	1 cut(s)	653
StuI	AGGCCT	1 cut(s)	838
StyD4I	CCNGG	4 cut(s)	103, 118, 564, 681
StyI	CCWWGG	2 cut(s)	907, 1082
TaaI	ACNGT	2 cut(s)	899, 930
TaiI	ACGT	2 cut(s)	605, 711
TaqI	TCGA	2 cut(s)	329, 426
TasI	AATT	6 cut(s)	30, 434, 612, 739, 901, 981
TatI	WGTACW	2 cut(s)	588, 1044
TauI	GCSGC	1 cut(s)	728
TfiI	GAWTC	3 cut(s)	661, 811, 885
Tru1I	TTAA	3 cut(s)	405, 804, 1108
Tru9I	TTAA	3 cut(s)	405, 804, 1108
TscAI	CASTG	3 cut(s)	306, 902, 933
TseFI	GTSAC	2 cut(s)	295, 361
TseI	GCWGC	3 cut(s)	159, 314, 321
Tsp45I	GTSAC	2 cut(s)	295, 361
TspDTI	ATGAA	4 cut(s)	140, 569, 622, 1038
TspGWI	ACGGA	1 cut(s)	1021
TspRI	CASTG	3 cut(s)	306, 902, 933
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	955
XspI	CTAG	1 cut(s)	653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.