Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0011259

Physical Location & Seq

Genomic Coordinates Reverse (-)

9843847 .. 9845784

Gene Structure 1938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0122000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCAAGGCAATCGAGTAAGCGTGTGAGTTTTAGTCCCGATGTGTATGATAATAAGCCAATCATGTACCTGAAACAGAGTGGTGGCACCAGAGTTGGTGGAAACAGAAACATGGCCAGTGGAATTTGGGCTTTCAGGCAGCTCAATGATACAAATTCACTCTCTGCACCGGTCAGATTTCTACGCGGACTCAGGGCTAAGGTGGCAAGAGTTATCTCAGCAAGGAAGAGGAGTTCACGTAAGGTGTCTTCATCTAACCTTACAAGGTCAAGGTCTGTATCAGATCCCATCGAGTCTCATCGAGCCGAAGCGCTAGAGGACTGCATCGAGTTCTTGAATTCTGCTTCGTCTCTGCAGAGGACTAGTTCAGTTACTTCAAATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0008150 GO:0008152 GO:0012505 GO:0016020 GO:0016021 GO:0016491 GO:0016627 GO:0016628 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0036094 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050613 GO:0050661 GO:0050662 GO:0055114 GO:0097159 GO:0098827 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00100 ko01100 ko01110 ko01130 map00100 map01100 map01110 map01130

Pfam Domains

Protein Families

ERG4_ERG24

Protein Analysis

128

Amino Acids

14.17

Weight (kDa)

11.25

Isoelectric Point (pI)

73.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52940
fragaria_vesca	FvH4_6g17830 FvH4_6g17830
malus_domestica	MD12G1017500.v1.1 MD14G1015200.v1.1
prunus_persica	Prupe.7G118200_v2.0.a1 Prupe.7G118200_v2.0.a1 Prupe.8G104900_v2.0.a1
pyrus_communis	pycom12g01410 pycom14g01270
rosa_chinensis	RchiOBHm_Chr3g0472081
rosa_laevigata	RLG00000024106
rosa_multiflora	Rmu_sc0002532.1_g000014
rosa_roxburghii	Rroxscaffold_6G00409260
rosa_rugosa	Rorug03G0122000
rosa_samantha	Rh3AG173800 Rh3BG199200 Rh3CG197700 Rh3DG175300
rosa_wichuraiana	Rw3G016680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AccII	CGCG	1 cut(s)	186
AciI	CCGC	1 cut(s)	186
AclWI	GGATC	1 cut(s)	278
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	3 cut(s)	123, 154, 337
AfaI	GTAC	1 cut(s)	68
AfeI	AGCGCT	1 cut(s)	312
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	2 cut(s)	337, 378
AhlI	ACTAGT	1 cut(s)	362
AloI	GAACNNNNNNTCC	2 cut(s)	217, 249
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw26I	GTCTC	2 cut(s)	300, 354
AlwI	GGATC	1 cut(s)	278
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	1 cut(s)	114
ApeKI	GCWGC	1 cut(s)	139
ApoI	RAATTY	3 cut(s)	123, 154, 337
AsiGI	ACCGGT	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	86
BarI	GAAGNNNNNNTAC	2 cut(s)	232, 264
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	1 cut(s)	296
BcoDI	GTCTC	2 cut(s)	300, 354
BcuI	ACTAGT	1 cut(s)	362
BfaI	CTAG	2 cut(s)	314, 363
BfmI	CTRYAG	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	314
BisI	GCNGC	1 cut(s)	140
BlsI	GCNGC	1 cut(s)	141
BmiI	GGNNCC	1 cut(s)	88
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	198
BsaAI	YACGTR	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	117
BseMII	CTCAG	2 cut(s)	205, 231
BseNI	ACTGG	1 cut(s)	117
BseRI	GAGGAG	1 cut(s)	244
BseXI	GCAGC	1 cut(s)	151
BsgI	GTGCAG	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	116
BshNI	GGYRCC	1 cut(s)	86
BshTI	ACCGGT	1 cut(s)	169
BsiSI	CCGG	1 cut(s)	170
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	300, 354
BsmBI	CGTCTC	1 cut(s)	354
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	283
BspACI	CCGC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	116
BspCNI	CTCAG	2 cut(s)	204, 230
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	88
BspMAI	CTGCAG	1 cut(s)	357
BspPI	GGATC	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	86
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	117
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	1 cut(s)	283
Bst6I	CTCTTC	1 cut(s)	221
BstBAI	YACGTR	1 cut(s)	239
BstDEI	CTNAG	3 cut(s)	191, 198, 217
BstFNI	CGCG	1 cut(s)	186
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	286
BstMAI	GTCTC	2 cut(s)	300, 354
BstMBI	GATC	1 cut(s)	283
BstMWI	GCNNNNNNNGC	1 cut(s)	203
BstSFI	CTRYAG	1 cut(s)	353
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	151
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	1 cut(s)	283
BstYI	RGATCY	1 cut(s)	283
BsuRI	GGCC	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	313
Cfr10I	RCCGGY	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	67
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	2 cut(s)	64, 112
CviJI	RGCY	6 cut(s)	58, 116, 131, 142, 197, 305
CviKI_1	RGCY	6 cut(s)	58, 116, 131, 142, 197, 305
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	3 cut(s)	191, 198, 217
DpnI	GATC	1 cut(s)	285
DpnII	GATC	1 cut(s)	283
EaeI	YGGCCR	1 cut(s)	114
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Eco47III	AGCGCT	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	354
FaeI	CATG	2 cut(s)	67, 115
FaiI	YATR	3 cut(s)	48, 65, 113
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	63, 111
Fnu4HI	GCNGC	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	140
FspBI	CTAG	2 cut(s)	314, 363
GlaI	GCGC	1 cut(s)	312
GluI	GCNGC	1 cut(s)	140
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	116
HapII	CCGG	1 cut(s)	170
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	2 cut(s)	67, 115
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HinfI	GANTC	2 cut(s)	189, 293
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	236
Hpy188I	TCNGA	2 cut(s)	176, 283
Hpy188III	TCNNGA	2 cut(s)	38, 334
Hpy8I	GTNNAC	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	238
HpyCH4V	TGCA	3 cut(s)	167, 324, 355
HpyF10VI	GCNNNNNNNGC	1 cut(s)	203
HpyF3I	CTNAG	3 cut(s)	191, 198, 217
HpySE526I	ACGT	1 cut(s)	238
Hsp92II	CATG	2 cut(s)	67, 115
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	83, 103, 121, 130, 178, 183
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	314, 363
MaeII	ACGT	1 cut(s)	238
MaeIII	GTNAC	1 cut(s)	370
MalI	GATC	1 cut(s)	285
MboI	GATC	1 cut(s)	283
MboII	GAAGA	2 cut(s)	238, 240
MflI	RGATCY	1 cut(s)	283
MlsI	TGGCCA	1 cut(s)	116
MluCI	AATT	4 cut(s)	123, 154, 337, 379
MluNI	TGGCCA	1 cut(s)	116
MlyI	GAGTC	2 cut(s)	183, 302
MnlI	CCTC	3 cut(s)	222, 310, 351
Mox20I	TGGCCA	1 cut(s)	116
MscI	TGGCCA	1 cut(s)	116
Msp20I	TGGCCA	1 cut(s)	116
MspI	CCGG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	203
NdeII	GATC	1 cut(s)	283
NlaIII	CATG	2 cut(s)	67, 115
NlaIV	GGNNCC	1 cut(s)	88
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	1 cut(s)	141
PleI	GAGTC	2 cut(s)	183, 301
PpsI	GAGTC	2 cut(s)	183, 301
Ppu21I	YACGTR	1 cut(s)	239
PspN4I	GGNNCC	1 cut(s)	88
PstI	CTGCAG	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	283
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
SatI	GCNGC	1 cut(s)	140
Sau3AI	GATC	1 cut(s)	283
SchI	GAGTC	2 cut(s)	183, 302
SetI	ASST	8 cut(s)	72, 144, 204, 241, 246, 261, 269, 275
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	1 cut(s)	353
SpeI	ACTAGT	1 cut(s)	362
Sse9I	AATT	4 cut(s)	123, 154, 337, 379
SsiI	CCGC	1 cut(s)	186
SspMI	CTAG	2 cut(s)	314, 363
TaiI	ACGT	1 cut(s)	241
TaqI	TCGA	4 cut(s)	14, 291, 301, 327
TasI	AATT	4 cut(s)	123, 154, 337, 379
TscAI	CASTG	1 cut(s)	124
TseI	GCWGC	1 cut(s)	139
TspDTI	ATGAA	1 cut(s)	240
TspRI	CASTG	1 cut(s)	124
XapI	RAATTY	3 cut(s)	123, 154, 337
XspI	CTAG	2 cut(s)	314, 363

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.