FvH4_6g18470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014416
Physical Location & Seq
Forward (+)
12220554 .. 12222572
2019 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g18470.t1

Sequence Viewer

Length: 480 bp
ATGGCTTCTCTCCCTGGAAATTCTTCTTCTGCAGCACTTGTAGGGCCGAGCAGAGGTCATATTCTATCAGACATGGAAGAGGAAGAGGATCTTTTTGAGATTGATCTCGAGGCAGTTGAGAGTTTGCCTCCTCCACAGTACAACTGGGACAGTTATTTCGTAGCAGCCGGAGATGTTCTTCTGGCCAATTGCCTGCTGCCTGTAACTGATATTTCTCGTGCGATTCCGACAGTTTCAGAAGCATTGTCATGTAAGAGTGGTGCTAATGTTGTAATGATACCGGAACCGGTGCCCTTGGGACAGCTTCTTAGGCTGCCATTCTTGGAGGCTTTTGGTCTTCACCAAAAGTCAGTTAAACCGCAATGGGATTTCGTTGAGAAAAATGAAACTCGTTTAGACGCTCGGTCTGAGCCATTCAGAGGAAGAAGTTCCTTCAATGCTGTTTCTGTCGAGTTGGAGAAAAAGAGAATTTGGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.51

Weight (kDa)

4.68

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36295
fragaria_vesca FvH4_6g18470
malus_domestica MD12G1023800.v1.1 MD14G1021000.v1.1
prunus_persica Prupe.7G112700_v2.0.a1
pyrus_communis pycom12g02220 pycom14g02040
rosa_chinensis RchiOBHm_Chr3g0473001
rosa_laevigata RLG00000024038
rosa_multiflora Rmu_sc0010986.1_g000005
rosa_roxburghii Rroxscaffold_6G00408410
rosa_rugosa Rorug03G0130600
rosa_samantha Rh3AG182400 Rh3BG208700 Rh3CG205700 Rh3DG167300
rosa_wichuraiana Rw3G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 1 cut(s) 359
AclWI GGATC 1 cut(s) 96
AcoI YGGCCR 1 cut(s) 183
AcsI RAATTY 2 cut(s) 19, 468
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 53, 419
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 436
AhdI GACNNNNNGTC 1 cut(s) 403
AjnI CCWGG 1 cut(s) 13
AluBI AGCT 2 cut(s) 304, 477
AluI AGCT 2 cut(s) 304, 477
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 107
AoxI GGCC 2 cut(s) 44, 183
ApeKI GCWGC 4 cut(s) 32, 164, 196, 313
ApoI RAATTY 2 cut(s) 19, 468
ArsI GACNNNNNNTTYG 2 cut(s) 140, 172
AsiGI ACCGGT 1 cut(s) 286
Asp700I GAANNNNTTC 2 cut(s) 22, 427
AspS9I GGNCC 1 cut(s) 44
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 294
BalI TGGCCA 1 cut(s) 185
BanI GGYRCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 1 cut(s) 329
BbvI GCAGC 4 cut(s) 44, 176, 183, 300
BciT130I CCWGG 1 cut(s) 15
BfmI CTRYAG 1 cut(s) 30
BisI GCNGC 4 cut(s) 33, 165, 197, 314
BlsI GCNGC 4 cut(s) 34, 166, 198, 315
Bme1390I CCNGG 1 cut(s) 15
BmeRI GACNNNNNGTC 1 cut(s) 403
BmeT110I CYCGRG 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 44
BmiI GGNNCC 2 cut(s) 285, 291
BmrFI CCNGG 1 cut(s) 15
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 329
BplI GAGNNNNNCTC 2 cut(s) 112, 144
BsaJI CCNNGG 2 cut(s) 13, 294
BsaWI WCCGGW 2 cut(s) 280, 286
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 419
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 368
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 13, 294
BseLI CCNNNNNNNGG 2 cut(s) 53, 419
BseMI GCAATG 1 cut(s) 368
BseMII CTCAG 1 cut(s) 399
BseNI ACTGG 1 cut(s) 149
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 4 cut(s) 44, 176, 183, 300
BshFI GGCC 2 cut(s) 46, 185
BshNI GGYRCC 1 cut(s) 289
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 168, 281, 287
BslFI GGGAC 2 cut(s) 161, 312
BslI CCNNNNNNNGG 2 cut(s) 53, 419
BsmFI GGGAC 2 cut(s) 161, 312
BsnI GGCC 2 cut(s) 46, 185
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 88, 103
BspACI CCGC 1 cut(s) 359
BspANI GGCC 2 cut(s) 46, 185
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 2 cut(s) 285, 291
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 368
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 13, 294
BssMI GATC 2 cut(s) 88, 103
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 15
Bst4CI ACNGT 3 cut(s) 138, 152, 232
Bst6I CTCTTC 2 cut(s) 72, 78
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 308, 408
BstKTI GATC 2 cut(s) 91, 106
BstMBI GATC 2 cut(s) 88, 103
BstMWI GCNNNNNNNGC 1 cut(s) 310
BstNI CCWGG 1 cut(s) 15
BstSCI CCNGG 1 cut(s) 13
BstSFI CTRYAG 1 cut(s) 30
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 4 cut(s) 44, 176, 183, 300
BstV2I GAAGAC 1 cut(s) 329
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BsuRI GGCC 2 cut(s) 46, 185
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 407
Csp6I GTAC 1 cut(s) 139
CspAI ACCGGT 1 cut(s) 286
CviAII CATG 2 cut(s) 73, 249
CviJI RGCY 9 cut(s) 5, 46, 167, 185, 304, 313, 329, 412, 477
CviKI_1 RGCY 9 cut(s) 5, 46, 167, 185, 304, 313, 329, 412, 477
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 308, 408
DpnI GATC 2 cut(s) 90, 105
DpnII GATC 2 cut(s) 88, 103
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 72, 78
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 2 cut(s) 72, 78
Eco130I CCWWGG 1 cut(s) 294
Eco88I CYCGRG 1 cut(s) 107
EcoRII CCWGG 1 cut(s) 13
EcoT14I CCWWGG 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 294
FaeI CATG 2 cut(s) 76, 252
FaiI YATR 3 cut(s) 60, 74, 250
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 161, 312
FatI CATG 2 cut(s) 72, 248
Fnu4HI GCNGC 4 cut(s) 33, 165, 197, 314
Fsp4HI GCNGC 4 cut(s) 33, 165, 197, 314
GluI GCNGC 4 cut(s) 33, 165, 197, 314
HaeIII GGCC 2 cut(s) 46, 185
HapII CCGG 3 cut(s) 168, 281, 287
HgaI GACGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 76, 252
HinfI GANTC 1 cut(s) 223
HpaII CCGG 3 cut(s) 168, 281, 287
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 5 cut(s) 70, 228, 238, 409, 419
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 1 cut(s) 442
HpyCH4III ACNGT 3 cut(s) 138, 152, 232
HpyCH4V TGCA 1 cut(s) 32
HpyF10VI GCNNNNNNNGC 1 cut(s) 310
HpyF3I CTNAG 2 cut(s) 308, 408
Hsp92II CATG 2 cut(s) 76, 252
Kzo9I GATC 2 cut(s) 88, 103
LmnI GCTCC 1 cut(s) 474
LpnPI CCDG 8 cut(s) 27, 130, 167, 181, 206, 213, 294, 300
Lsp1109I GCAGC 4 cut(s) 44, 176, 183, 300
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 90, 105
MboI GATC 2 cut(s) 88, 103
MboII GAAGA 7 cut(s) 15, 18, 89, 95, 170, 329, 435
MfeI CAATTG 1 cut(s) 187
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 294
MlsI TGGCCA 1 cut(s) 185
MluCI AATT 3 cut(s) 19, 187, 468
MluNI TGGCCA 1 cut(s) 185
MmeI TCCRAC 2 cut(s) 251, 435
MnlI CCTC 8 cut(s) 47, 73, 79, 103, 138, 141, 319, 413
Mox20I TGGCCA 1 cut(s) 185
MroXI GAANNNNTTC 2 cut(s) 22, 427
MscI TGGCCA 1 cut(s) 185
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 247
Msp20I TGGCCA 1 cut(s) 185
MspI CCGG 3 cut(s) 168, 281, 287
MspR9I CCNGG 1 cut(s) 15
MunI CAATTG 1 cut(s) 187
MvaI CCWGG 1 cut(s) 15
MwoI GCNNNNNNNGC 1 cut(s) 310
NdeII GATC 2 cut(s) 88, 103
NlaIII CATG 2 cut(s) 76, 252
NlaIV GGNNCC 2 cut(s) 285, 291
NmeAIII GCCGAG 1 cut(s) 72
PaeR7I CTCGAG 1 cut(s) 107
PdmI GAANNNNTTC 2 cut(s) 22, 427
PfeI GAWTC 1 cut(s) 223
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 4 cut(s) 34, 166, 198, 315
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
PspN4I GGNNCC 2 cut(s) 285, 291
PspPI GGNCC 1 cut(s) 44
PstI CTGCAG 1 cut(s) 34
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 354
SatI GCNGC 4 cut(s) 33, 165, 197, 314
Sau3AI GATC 2 cut(s) 88, 103
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 15
SduI GDGCHC 1 cut(s) 294
SetI ASST 3 cut(s) 58, 306, 479
SfcI CTRYAG 1 cut(s) 30
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 3 cut(s) 19, 187, 468
SsiI CCGC 1 cut(s) 359
StyD4I CCNGG 1 cut(s) 13
StyI CCWWGG 1 cut(s) 294
TaaI ACNGT 3 cut(s) 138, 152, 232
TaqI TCGA 2 cut(s) 108, 450
TaqII GACCGA 1 cut(s) 393
TasI AATT 3 cut(s) 19, 187, 468
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TseI GCWGC 4 cut(s) 32, 164, 196, 313
TspDTI ATGAA 1 cut(s) 399
XapI RAATTY 2 cut(s) 19, 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 107
XmnI GAANNNNTTC 2 cut(s) 22, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.