MD14G1021000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0014416
Physical Location & Seq
Forward (+)
1963960 .. 1964313
354 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1021000.v1.1.491

Sequence Viewer

Length: 354 bp
ATGGCTTATCTCGTCGAAGGTTCCCCTTCCACGCAATGTGCTGGACTGTGTGAAGGCCTAGCGGACATCGAAGACGAAGATGATCTCTTTGAGATCGATCTCGATTTGATTGACAGCGTTCCTCAAACACAGTACTACTGGAACAGGTATTTCACTGCGACCGGAAATGCACTGCTTGCCAATTGCCTACTGCCGGCCACCGACATCTCCTGTGCCATCCCCGTGGTTTCGAAGGCACTGTCGTCGTCGGAGCGGACTGGTAATGTTGTTATGGTCCCGCAAGCTGTGCCCTTGGGGCAGCTTCTAGGGTTGCCATTCCACGAGGCATTTGGGCTTCTCACCTTAAGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.62

Weight (kDa)

4.08

Isoelectric Point (pI)

48.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36295
fragaria_vesca FvH4_6g18470
malus_domestica MD12G1023800.v1.1 MD14G1021000.v1.1
prunus_persica Prupe.7G112700_v2.0.a1
pyrus_communis pycom12g02220 pycom14g02040
rosa_chinensis RchiOBHm_Chr3g0473001
rosa_laevigata RLG00000024038
rosa_multiflora Rmu_sc0010986.1_g000005
rosa_roxburghii Rroxscaffold_6G00408410
rosa_rugosa Rorug03G0130600
rosa_samantha Rh3AG182400 Rh3BG208700 Rh3CG205700 Rh3DG167300
rosa_wichuraiana Rw3G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 3 cut(s) 62, 253, 278
AcoI YGGCCR 1 cut(s) 195
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 1 cut(s) 193
AflII CTTAAG 1 cut(s) 343
AluBI AGCT 2 cut(s) 284, 301
AluI AGCT 2 cut(s) 284, 301
AoxI GGCC 2 cut(s) 55, 195
ApeKI GCWGC 1 cut(s) 298
ArsI GACNNNNNNTTYG 2 cut(s) 224, 256
AspS9I GGNCC 1 cut(s) 274
AsuHPI GGTGA 1 cut(s) 331
AsuII TTCGAA 1 cut(s) 230
AvaII GGWCC 1 cut(s) 274
BaeGI GKGCMC 1 cut(s) 291
BauI CACGAG 1 cut(s) 320
BbsI GAAGAC 1 cut(s) 78
BbvI GCAGC 1 cut(s) 310
BccI CCATC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 225, 259
BfaI CTAG 2 cut(s) 59, 305
BfrI CTTAAG 1 cut(s) 343
BglI GCCNNNNNGGC 1 cut(s) 295
BisI GCNGC 1 cut(s) 299
BlsI GCNGC 1 cut(s) 300
BmcAI AGTACT 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 274
BmgT120I GGNCC 1 cut(s) 274
BmiI GGNNCC 2 cut(s) 22, 276
BpiI GAAGAC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 230
Bsa29I ATCGAT 1 cut(s) 96
BsaJI CCNNGG 2 cut(s) 222, 291
BsaWI WCCGGW 1 cut(s) 161
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse118I RCCGGY 1 cut(s) 193
Bse1I ACTGG 2 cut(s) 143, 262
Bse3DI GCAATG 1 cut(s) 41
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 2 cut(s) 222, 291
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 41
BseNI ACTGG 2 cut(s) 143, 262
BseSI GKGCMC 1 cut(s) 291
BseXI GCAGC 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 57, 197
BshVI ATCGAT 1 cut(s) 96
BsiEI CGRYCG 1 cut(s) 162
BsiSI CCGG 2 cut(s) 162, 194
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 193
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 57, 197
Bsp119I TTCGAA 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 3 cut(s) 82, 93, 97
BspACI CCGC 3 cut(s) 62, 253, 278
BspANI GGCC 2 cut(s) 57, 197
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 2 cut(s) 22, 276
BspT104I TTCGAA 1 cut(s) 230
BspTI CTTAAG 1 cut(s) 343
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 193
BsrI ACTGG 2 cut(s) 143, 262
BssAI RCCGGY 1 cut(s) 193
BssECI CCNNGG 2 cut(s) 222, 291
BssMI GATC 3 cut(s) 82, 93, 97
BssSI CACGAG 1 cut(s) 320
BssT1I CCWWGG 1 cut(s) 291
Bst2BI CACGAG 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 48, 132, 240
BstAFI CTTAAG 1 cut(s) 343
BstAPI GCANNNNNTGC 2 cut(s) 176, 286
BstBI TTCGAA 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 177, 195, 282
BstDSI CCRYGG 1 cut(s) 222
BstF5I GGATG 1 cut(s) 216
BstKTI GATC 3 cut(s) 85, 96, 100
BstMBI GATC 3 cut(s) 82, 93, 97
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 3 cut(s) 176, 286, 295
BstSLI GKGCMC 1 cut(s) 291
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 78
BstXI CCANNNNNNTGG 1 cut(s) 223
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 2 cut(s) 57, 197
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 222
BtsCI GGATG 1 cut(s) 216
BtsI GCAGTG 2 cut(s) 153, 170
BtsIMutI CAGTG 3 cut(s) 153, 170, 236
Cac8I GCNNGC 3 cut(s) 177, 195, 282
Cfr10I RCCGGY 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 274
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 6 cut(s) 5, 57, 197, 284, 301, 334
CviKI_1 RGCY 6 cut(s) 5, 57, 197, 284, 301, 334
CviQI GTAC 1 cut(s) 133
DpnI GATC 3 cut(s) 84, 95, 99
DpnII GATC 3 cut(s) 82, 93, 97
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 291
Eco147I AGGCCT 1 cut(s) 57
Eco47I GGWCC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaiI YATR 1 cut(s) 272
FaqI GGGAC 1 cut(s) 260
FauI CCCGC 1 cut(s) 285
Fnu4HI GCNGC 1 cut(s) 299
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 299
FspBI CTAG 2 cut(s) 59, 305
GluI GCNGC 1 cut(s) 299
HaeIII GGCC 2 cut(s) 57, 197
HapII CCGG 2 cut(s) 162, 194
HpaII CCGG 2 cut(s) 162, 194
HphI GGTGA 1 cut(s) 331
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 101
Hpy99I CGWCG 3 cut(s) 17, 247, 250
HpyAV CCTTC 4 cut(s) 11, 36, 47, 226
HpyCH4III ACNGT 3 cut(s) 48, 132, 240
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 3 cut(s) 176, 286, 295
KroI GCCGGC 1 cut(s) 193
KroNI GCCGGC 1 cut(s) 195
Kzo9I GATC 3 cut(s) 82, 93, 97
LmnI GCTCC 1 cut(s) 250
LpnPI CCDG 7 cut(s) 27, 124, 130, 175, 207, 223, 243
Lsp1109I GCAGC 1 cut(s) 310
MaeI CTAG 2 cut(s) 59, 305
MalI GATC 3 cut(s) 84, 95, 99
MbiI CCGCTC 1 cut(s) 253
MboI GATC 3 cut(s) 82, 93, 97
MboII GAAGA 2 cut(s) 83, 89
MfeI CAATTG 1 cut(s) 181
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 1 cut(s) 181
MmeI TCCRAC 1 cut(s) 228
MnlI CCTC 2 cut(s) 132, 316
MroNI GCCGGC 1 cut(s) 193
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 221
MspCI CTTAAG 1 cut(s) 343
MspI CCGG 2 cut(s) 162, 194
MunI CAATTG 1 cut(s) 181
MwoI GCNNNNNNNGC 3 cut(s) 176, 286, 295
NaeI GCCGGC 1 cut(s) 195
NdeII GATC 3 cut(s) 82, 93, 97
NgoMIV GCCGGC 1 cut(s) 193
NlaIV GGNNCC 2 cut(s) 22, 276
NspV TTCGAA 1 cut(s) 230
PceI AGGCCT 1 cut(s) 57
PdiI GCCGGC 1 cut(s) 195
PkrI GCNGC 1 cut(s) 300
PspN4I GGNNCC 2 cut(s) 22, 276
PspPI GGNCC 1 cut(s) 274
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 1 cut(s) 299
Sau3AI GATC 3 cut(s) 82, 93, 97
Sau96I GGNCC 1 cut(s) 274
ScaI AGTACT 1 cut(s) 134
SduI GDGCHC 1 cut(s) 291
SetI ASST 5 cut(s) 22, 149, 286, 303, 344
SfuI TTCGAA 1 cut(s) 230
SinI GGWCC 1 cut(s) 274
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 343
SmoI CTYRAG 1 cut(s) 343
Sse9I AATT 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 57
SsiI CCGC 3 cut(s) 62, 253, 278
SspMI CTAG 2 cut(s) 59, 305
StuI AGGCCT 1 cut(s) 57
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 48, 132, 240
TaqI TCGA 5 cut(s) 15, 69, 96, 102, 230
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 132
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 3 cut(s) 160, 177, 243
TseI GCWGC 1 cut(s) 298
TspRI CASTG 3 cut(s) 160, 177, 243
Vha464I CTTAAG 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
XspI CTAG 2 cut(s) 59, 305
ZrmI AGTACT 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.