RLG00000024038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0014416
Physical Location & Seq
Reverse (-)
31056217 .. 31056702
486 bp
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UTR
Exon/CDS
Intron
RLM00000024038

Sequence Viewer

Length: 486 bp
ATGGCTTCTTTCCTTGGAGGTTCTTCTTCTGCAGACCATGCAGGGCTAAGCAGATGTCATATTTTATCAGACATGGAAGACGAAGAGGATCTTTTTGAGATTGATCTCGAGGCGGTTGAGAGTATTCCTCCTCCACAGTACAACTGGGACAGATATTTCACTGCAGCCGGAGATGTTCTTCTTGCAAATTGCCTGCTGCCTGTAACTGATATCTCTCGTGCGATTCCAACAGTTTCAGAAGCATTGTCATACAAGACTGGTGCTAATGTTGTAATGATACCGGAACCGGTGCCCTTGGGACAGCTCCTTCGGCTGCCATTCTTTGAGGCTTTTGGTCTTCACCAAAAGAGAGTGAAACCTCATTGGGATTTCGTTGAGAAAAATGAAACTCGACATTTAGACGCTGGGTCTGAGTCATTCAGAGGAAGTAGAAGTTCCTTCAATTTTGATTCTGTAAGTGAAGATATTGCAATCTATGGTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.79

Weight (kDa)

4.59

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36295
fragaria_vesca FvH4_6g18470
malus_domestica MD12G1023800.v1.1 MD14G1021000.v1.1
prunus_persica Prupe.7G112700_v2.0.a1
pyrus_communis pycom12g02220 pycom14g02040
rosa_chinensis RchiOBHm_Chr3g0473001
rosa_laevigata RLG00000024038
rosa_multiflora Rmu_sc0010986.1_g000005
rosa_roxburghii Rroxscaffold_6G00408410
rosa_rugosa Rorug03G0130600
rosa_samantha Rh3AG182400 Rh3BG208700 Rh3CG205700 Rh3DG167300
rosa_wichuraiana Rw3G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 289
AciI CCGC 1 cut(s) 113
AclWI GGATC 1 cut(s) 96
AfaI GTAC 1 cut(s) 140
AgeI ACCGGT 1 cut(s) 286
AgsI TTSAA 1 cut(s) 442
AhdI GACNNNNNGTC 1 cut(s) 406
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 1 cut(s) 96
Ama87I CYCGRG 1 cut(s) 107
ApeKI GCWGC 3 cut(s) 164, 196, 313
ArsI GACNNNNNNTTYG 2 cut(s) 291, 323
AsiGI ACCGGT 1 cut(s) 286
AsuHPI GGTGA 1 cut(s) 332
AvaI CYCGRG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 294
BanI GGYRCC 1 cut(s) 289
BauI CACGAG 1 cut(s) 216
BbsI GAAGAC 2 cut(s) 84, 329
BbvI GCAGC 3 cut(s) 176, 183, 300
BfmI CTRYAG 2 cut(s) 30, 162
BisI GCNGC 3 cut(s) 165, 197, 314
BlpI GCTNAGC 1 cut(s) 47
BlsI GCNGC 3 cut(s) 166, 198, 315
BmeRI GACNNNNNGTC 1 cut(s) 406
BmeT110I CYCGRG 1 cut(s) 107
BmiI GGNNCC 2 cut(s) 285, 291
BmrI ACTGGG 1 cut(s) 154
BmuI ACTGGG 1 cut(s) 154
BpiI GAAGAC 2 cut(s) 84, 329
BplI GAGNNNNNCTC 2 cut(s) 112, 144
Bpu1102I GCTNAGC 1 cut(s) 47
BsaJI CCNNGG 2 cut(s) 13, 294
BsaWI WCCGGW 2 cut(s) 280, 286
Bse118I RCCGGY 1 cut(s) 286
Bse1I ACTGG 2 cut(s) 149, 262
BseDI CCNNGG 2 cut(s) 13, 294
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 149, 262
BseRI GAGGAG 1 cut(s) 120
BseSI GKGCMC 1 cut(s) 294
BseXI GCAGC 3 cut(s) 176, 183, 300
BseYI CCCAGC 1 cut(s) 404
BshNI GGYRCC 1 cut(s) 289
BshTI ACCGGT 1 cut(s) 286
BsiHKCI CYCGRG 1 cut(s) 107
BsiSI CCGG 3 cut(s) 168, 281, 287
BslFI GGGAC 2 cut(s) 161, 312
BsmFI GGGAC 2 cut(s) 161, 312
BsoBI CYCGRG 1 cut(s) 107
Bsp1286I GDGCHC 1 cut(s) 294
Bsp143I GATC 2 cut(s) 88, 103
Bsp1720I GCTNAGC 1 cut(s) 47
BspACI CCGC 1 cut(s) 113
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 285, 291
BspMAI CTGCAG 2 cut(s) 34, 166
BspPI GGATC 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 289
BsrFI RCCGGY 1 cut(s) 286
BsrI ACTGG 2 cut(s) 149, 262
BssAI RCCGGY 1 cut(s) 286
BssECI CCNNGG 2 cut(s) 13, 294
BssMI GATC 2 cut(s) 88, 103
BssSI CACGAG 1 cut(s) 216
BssT1I CCWWGG 2 cut(s) 13, 294
Bst2BI CACGAG 1 cut(s) 216
Bst4CI ACNGT 2 cut(s) 138, 232
Bst6I CTCTTC 1 cut(s) 78
BstAPI GCANNNNNTGC 1 cut(s) 38
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 47, 411
BstKTI GATC 2 cut(s) 91, 106
BstMBI GATC 2 cut(s) 88, 103
BstMWI GCNNNNNNNGC 2 cut(s) 38, 310
BstSFI CTRYAG 2 cut(s) 30, 162
BstSLI GKGCMC 1 cut(s) 294
BstV1I GCAGC 3 cut(s) 176, 183, 300
BstV2I GAAGAC 2 cut(s) 84, 329
BstX2I RGATCY 1 cut(s) 88
BstYI RGATCY 1 cut(s) 88
BtsI GCAGTG 1 cut(s) 159
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 194
Cfr10I RCCGGY 1 cut(s) 286
CseI GACGC 1 cut(s) 410
Csp6I GTAC 1 cut(s) 139
CspAI ACCGGT 1 cut(s) 286
CviAII CATG 2 cut(s) 38, 73
CviJI RGCY 7 cut(s) 5, 46, 167, 304, 313, 329, 483
CviKI_1 RGCY 7 cut(s) 5, 46, 167, 304, 313, 329, 483
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 2 cut(s) 47, 411
DpnI GATC 2 cut(s) 90, 105
DpnII GATC 2 cut(s) 88, 103
DriI GACNNNNNGTC 1 cut(s) 406
Eam1104I CTCTTC 1 cut(s) 78
Eam1105I GACNNNNNGTC 1 cut(s) 406
EarI CTCTTC 1 cut(s) 78
Eco130I CCWWGG 2 cut(s) 13, 294
Eco32I GATATC 1 cut(s) 211
Eco88I CYCGRG 1 cut(s) 107
EcoRV GATATC 1 cut(s) 211
EcoT14I CCWWGG 2 cut(s) 13, 294
ErhI CCWWGG 2 cut(s) 13, 294
FaeI CATG 2 cut(s) 41, 76
FaiI YATR 5 cut(s) 39, 60, 74, 250, 477
FalI AAGNNNNNCTT 2 cut(s) 75, 107
FaqI GGGAC 2 cut(s) 161, 312
FatI CATG 2 cut(s) 37, 72
Fnu4HI GCNGC 3 cut(s) 165, 197, 314
Fsp4HI GCNGC 3 cut(s) 165, 197, 314
GluI GCNGC 3 cut(s) 165, 197, 314
GsaI CCCAGC 1 cut(s) 408
HapII CCGG 3 cut(s) 168, 281, 287
HgaI GACGC 1 cut(s) 410
Hin1II CATG 2 cut(s) 41, 76
HinfI GANTC 3 cut(s) 223, 413, 449
HpaII CCGG 3 cut(s) 168, 281, 287
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 4 cut(s) 70, 238, 412, 422
Hpy188III TCNNGA 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 317, 448
HpyCH4III ACNGT 2 cut(s) 138, 232
HpyCH4V TGCA 5 cut(s) 32, 41, 164, 185, 470
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 310
HpyF3I CTNAG 2 cut(s) 47, 411
Hsp92II CATG 2 cut(s) 41, 76
Kzo9I GATC 2 cut(s) 88, 103
LmnI GCTCC 1 cut(s) 309
LpnPI CCDG 9 cut(s) 27, 130, 181, 206, 213, 243, 294, 300, 390
Lsp1109I GCAGC 3 cut(s) 176, 183, 300
MaeIII GTNAC 1 cut(s) 202
MalI GATC 2 cut(s) 90, 105
MboI GATC 2 cut(s) 88, 103
MboII GAAGA 7 cut(s) 15, 18, 89, 95, 170, 329, 473
MflI RGATCY 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 294
MluCI AATT 2 cut(s) 187, 442
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 8 cut(s) 11, 79, 103, 138, 141, 319, 369, 416
MspI CCGG 3 cut(s) 168, 281, 287
MwoI GCNNNNNNNGC 2 cut(s) 38, 310
NdeII GATC 2 cut(s) 88, 103
NlaIII CATG 2 cut(s) 41, 76
NlaIV GGNNCC 2 cut(s) 285, 291
PaeR7I CTCGAG 1 cut(s) 107
PfeI GAWTC 2 cut(s) 223, 449
PinAI ACCGGT 1 cut(s) 286
PkrI GCNGC 3 cut(s) 166, 198, 315
PleI GAGTC 1 cut(s) 421
PpsI GAGTC 1 cut(s) 421
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 2 cut(s) 285, 291
PstI CTGCAG 2 cut(s) 34, 166
PsuI RGATCY 1 cut(s) 88
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SatI GCNGC 3 cut(s) 165, 197, 314
Sau3AI GATC 2 cut(s) 88, 103
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 1 cut(s) 294
SetI ASST 3 cut(s) 22, 306, 361
SfcI CTRYAG 2 cut(s) 30, 162
Sfr274I CTCGAG 1 cut(s) 107
SlaI CTCGAG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 107
SmoI CTYRAG 1 cut(s) 107
Sse9I AATT 2 cut(s) 187, 442
SsiI CCGC 1 cut(s) 113
StyI CCWWGG 2 cut(s) 13, 294
TaaI ACNGT 2 cut(s) 138, 232
TaqI TCGA 2 cut(s) 108, 391
TasI AATT 2 cut(s) 187, 442
TatI WGTACW 1 cut(s) 138
TfiI GAWTC 2 cut(s) 223, 449
TscAI CASTG 1 cut(s) 166
TseI GCWGC 3 cut(s) 164, 196, 313
TspDTI ATGAA 1 cut(s) 399
TspRI CASTG 1 cut(s) 166
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XhoI CTCGAG 1 cut(s) 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.