Rorug03G0130600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0014416
Physical Location & Seq
Reverse (-)
10609119 .. 10611171
2053 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0130600.1

Sequence Viewer

Length: 339 bp
ATGCTGGAAGGAAAAGCTGTGGTGCGTGAAACAGATATGCCAACTCTCATGCAGAGTCATGCCATGGAATTGGCTTACAAGGCTCTTGATCTACATGAAGTTTCTGATTGTCGATCCATTGCTCACTATATCAAGCAGAAATTTGATGAAGCTTATGGTCCTGCCTGGCACTGTGTTGTGGGCAAAGACTTTGGATCTTGCATCACGCATTTGTGCGGAAGTTTCATTTTCTTCCATGTGGAGATGATGGAGTTTCTCATATTCAAGGATGGCAGAGAGTCTAGTGAAAGCAGGGAAGAGGCAATTGGGGTTCTGCAAAATGGAAGCTTATCGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.65

Weight (kDa)

5.11

Isoelectric Point (pI)

40.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 3e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014416)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G36295
fragaria_vesca FvH4_6g18470
malus_domestica MD12G1023800.v1.1 MD14G1021000.v1.1
prunus_persica Prupe.7G112700_v2.0.a1
pyrus_communis pycom12g02220 pycom14g02040
rosa_chinensis RchiOBHm_Chr3g0473001
rosa_laevigata RLG00000024038
rosa_multiflora Rmu_sc0010986.1_g000005
rosa_roxburghii Rroxscaffold_6G00408410
rosa_rugosa Rorug03G0130600
rosa_samantha Rh3AG182400 Rh3BG208700 Rh3CG205700 Rh3DG167300
rosa_wichuraiana Rw3G016080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 216
AclWI GGATC 2 cut(s) 108, 202
AcsI RAATTY 1 cut(s) 140
AgsI TTSAA 1 cut(s) 265
AjnI CCWGG 1 cut(s) 164
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AluBI AGCT 3 cut(s) 17, 152, 327
AluI AGCT 3 cut(s) 17, 152, 327
AlwI GGATC 2 cut(s) 108, 202
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 1 cut(s) 158
AvaII GGWCC 1 cut(s) 158
BccI CCATC 2 cut(s) 241, 263
BciT130I CCWGG 1 cut(s) 166
BfaI CTAG 1 cut(s) 282
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 1 cut(s) 158
BmgT120I GGNCC 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 210
BsaJI CCNNGG 1 cut(s) 63
Bse3DI GCAATG 1 cut(s) 117
BseBI CCWGG 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 274
BseMI GCAATG 1 cut(s) 117
Bsp143I GATC 3 cut(s) 88, 113, 194
Bsp19I CCATGG 1 cut(s) 63
BspACI CCGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 108, 202
BsrDI GCAATG 1 cut(s) 117
BssECI CCNNGG 1 cut(s) 63
BssMI GATC 3 cut(s) 88, 113, 194
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 166
Bst4CI ACNGT 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 63
BstF5I GGATG 1 cut(s) 274
BstKTI GATC 3 cut(s) 91, 116, 197
BstMBI GATC 3 cut(s) 88, 113, 194
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 166
BstSCI CCNGG 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 194
BstXI CCANNNNNNTGG 1 cut(s) 70
BstYI RGATCY 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 274
BtsIMutI CAGTG 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 5 cut(s) 49, 59, 64, 95, 236
CviJI RGCY 5 cut(s) 17, 74, 83, 152, 327
CviKI_1 RGCY 5 cut(s) 17, 74, 83, 152, 327
DpnI GATC 3 cut(s) 90, 115, 196
DpnII GATC 3 cut(s) 88, 113, 194
Eam1104I CTCTTC 1 cut(s) 291
EarI CTCTTC 1 cut(s) 291
Eco130I CCWWGG 1 cut(s) 63
Eco47I GGWCC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 164
EcoT14I CCWWGG 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 5 cut(s) 52, 62, 67, 98, 239
FaiI YATR 9 cut(s) 38, 50, 60, 65, 96, 129, 156, 237, 260
FatI CATG 5 cut(s) 48, 58, 63, 94, 235
FokI GGATG 1 cut(s) 281
FspBI CTAG 1 cut(s) 282
Hin1II CATG 5 cut(s) 52, 62, 67, 98, 239
HindIII AAGCTT 2 cut(s) 150, 325
HinfI GANTC 2 cut(s) 55, 278
Hpy188I TCNGA 2 cut(s) 106, 334
Hpy188III TCNNGA 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 173
HpyCH4V TGCA 3 cut(s) 52, 201, 316
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
Hsp92II CATG 5 cut(s) 52, 62, 67, 98, 239
Kzo9I GATC 3 cut(s) 88, 113, 194
LpnPI CCDG 4 cut(s) 151, 174, 178, 277
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 282
MalI GATC 3 cut(s) 90, 115, 196
MboI GATC 3 cut(s) 88, 113, 194
MboII GAAGA 2 cut(s) 223, 308
MfeI CAATTG 1 cut(s) 303
MflI RGATCY 1 cut(s) 194
MluCI AATT 3 cut(s) 68, 140, 303
MlyI GAGTC 2 cut(s) 64, 287
MnlI CCTC 1 cut(s) 292
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 303
MvaI CCWGG 1 cut(s) 166
MwoI GCNNNNNNNGC 1 cut(s) 80
NcoI CCATGG 1 cut(s) 63
NdeII GATC 3 cut(s) 88, 113, 194
NlaIII CATG 5 cut(s) 52, 62, 67, 98, 239
PleI GAGTC 2 cut(s) 63, 286
PpsI GAGTC 2 cut(s) 63, 286
Psp6I CCWGG 1 cut(s) 164
PspGI CCWGG 1 cut(s) 164
PspPI GGNCC 1 cut(s) 158
PsuI RGATCY 1 cut(s) 194
Sau3AI GATC 3 cut(s) 88, 113, 194
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 64, 287
ScrFI CCNGG 1 cut(s) 166
SetI ASST 3 cut(s) 19, 154, 329
SfaNI GCATC 1 cut(s) 210
SinI GGWCC 1 cut(s) 158
Sse9I AATT 3 cut(s) 68, 140, 303
SsiI CCGC 1 cut(s) 216
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 1 cut(s) 173
TaqI TCGA 1 cut(s) 112
TasI AATT 3 cut(s) 68, 140, 303
TscAI CASTG 1 cut(s) 176
TspDTI ATGAA 3 cut(s) 111, 162, 214
TspRI CASTG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 158
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.