Pentatricopeptide repeat-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_6g19240 FvH4_6g19240 FvH4_6g19240 |
| malus_domestica | MD12G1028100.v1.1 |
| prunus_persica | Prupe.7G103500_v2.0.a1 |
| pyrus_communis | pycom12g02690 |
| rosa_chinensis | RchiOBHm_Chr3g0474341 |
| rosa_laevigata | RLG00000023931 |
| rosa_multiflora | Rmu_sc0000098.1_g000006 Rmu_sc0004507.1_g000010 Rmu_sc0031141.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00407330 |
| rosa_rugosa | Rorug03G0140200 |
| rosa_samantha | Rh3BG220200 Rh3DG215900 |
| rosa_wichuraiana | Rw3G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 647 |
| Acc36I | ACCTGC | 1 cut(s) | 647 |
| AccI | GTMKAC | 1 cut(s) | 75 |
| AccII | CGCG | 2 cut(s) | 413, 495 |
| AciI | CCGC | 2 cut(s) | 411, 495 |
| AclI | AACGTT | 1 cut(s) | 560 |
| AclWI | GGATC | 2 cut(s) | 693, 810 |
| AcsI | RAATTY | 1 cut(s) | 1108 |
| AcuI | CTGAAG | 3 cut(s) | 624, 1079, 1317 |
| AflIII | ACRYGT | 2 cut(s) | 78, 1345 |
| AgeI | ACCGGT | 1 cut(s) | 1319 |
| AgsI | TTSAA | 2 cut(s) | 724, 842 |
| AjnI | CCWGG | 3 cut(s) | 308, 859, 964 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 29 |
| AluBI | AGCT | 5 cut(s) | 118, 476, 506, 827, 1282 |
| AluI | AGCT | 5 cut(s) | 118, 476, 506, 827, 1282 |
| AlwI | GGATC | 2 cut(s) | 693, 810 |
| AoxI | GGCC | 4 cut(s) | 306, 694, 717, 1188 |
| ApeKI | GCWGC | 1 cut(s) | 824 |
| ApoI | RAATTY | 1 cut(s) | 1108 |
| AsiGI | ACCGGT | 1 cut(s) | 1319 |
| AspLEI | GCGC | 1 cut(s) | 495 |
| AsuHPI | GGTGA | 4 cut(s) | 274, 1149, 1261, 1318 |
| BbvI | GCAGC | 1 cut(s) | 836 |
| BccI | CCATC | 2 cut(s) | 44, 1201 |
| BceAI | ACGGC | 2 cut(s) | 384, 681 |
| BciT130I | CCWGG | 3 cut(s) | 310, 861, 966 |
| BciVI | GTATCC | 1 cut(s) | 426 |
| BfaI | CTAG | 4 cut(s) | 692, 806, 812, 828 |
| BfmI | CTRYAG | 1 cut(s) | 614 |
| BfuAI | ACCTGC | 1 cut(s) | 647 |
| BfuI | GTATCC | 1 cut(s) | 426 |
| BglII | AGATCT | 1 cut(s) | 142 |
| BisI | GCNGC | 2 cut(s) | 496, 825 |
| BlsI | GCNGC | 2 cut(s) | 497, 826 |
| Bme1390I | CCNGG | 3 cut(s) | 310, 861, 966 |
| BmiI | GGNNCC | 1 cut(s) | 243 |
| BmrFI | CCNGG | 3 cut(s) | 310, 861, 966 |
| BmsI | GCATC | 2 cut(s) | 97, 1302 |
| BpmI | CTGGAG | 1 cut(s) | 1100 |
| BsaJI | CCNNGG | 2 cut(s) | 859, 860 |
| BsaWI | WCCGGW | 1 cut(s) | 1319 |
| Bse118I | RCCGGY | 1 cut(s) | 1319 |
| Bse1I | ACTGG | 1 cut(s) | 1083 |
| Bse3DI | GCAATG | 1 cut(s) | 378 |
| BseBI | CCWGG | 3 cut(s) | 310, 861, 966 |
| BseDI | CCNNGG | 2 cut(s) | 859, 860 |
| BseGI | GGATG | 4 cut(s) | 55, 228, 358, 1027 |
| BseMI | GCAATG | 1 cut(s) | 378 |
| BseMII | CTCAG | 1 cut(s) | 171 |
| BseNI | ACTGG | 1 cut(s) | 1083 |
| BseRI | GAGGAG | 1 cut(s) | 961 |
| BseXI | GCAGC | 1 cut(s) | 836 |
| BseYI | CCCAGC | 1 cut(s) | 701 |
| BsgI | GTGCAG | 1 cut(s) | 205 |
| Bsh1236I | CGCG | 2 cut(s) | 413, 495 |
| BshFI | GGCC | 4 cut(s) | 308, 696, 719, 1190 |
| BshTI | ACCGGT | 1 cut(s) | 1319 |
| BsiSI | CCGG | 1 cut(s) | 1320 |
| BslFI | GGGAC | 3 cut(s) | 379, 1082, 1356 |
| BsmFI | GGGAC | 3 cut(s) | 379, 1082, 1356 |
| BsmI | GAATGC | 1 cut(s) | 196 |
| BsnI | GGCC | 4 cut(s) | 308, 696, 719, 1190 |
| Bsp143I | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| BspACI | CCGC | 2 cut(s) | 411, 495 |
| BspANI | GGCC | 4 cut(s) | 308, 696, 719, 1190 |
| BspCNI | CTCAG | 1 cut(s) | 172 |
| BspFNI | CGCG | 2 cut(s) | 413, 495 |
| BspLI | GGNNCC | 1 cut(s) | 243 |
| BspMAI | CTGCAG | 1 cut(s) | 618 |
| BspMI | ACCTGC | 1 cut(s) | 647 |
| BspPI | GGATC | 2 cut(s) | 693, 810 |
| BsrDI | GCAATG | 1 cut(s) | 378 |
| BsrFI | RCCGGY | 1 cut(s) | 1319 |
| BsrI | ACTGG | 1 cut(s) | 1083 |
| BssAI | RCCGGY | 1 cut(s) | 1319 |
| BssECI | CCNNGG | 2 cut(s) | 859, 860 |
| BssMI | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| Bst2UI | CCWGG | 3 cut(s) | 310, 861, 966 |
| Bst4CI | ACNGT | 3 cut(s) | 160, 268, 573 |
| Bst6I | CTCTTC | 2 cut(s) | 600, 1055 |
| BstC8I | GCNNGC | 2 cut(s) | 112, 116 |
| BstDEI | CTNAG | 2 cut(s) | 180, 1237 |
| BstEII | GGTNACC | 1 cut(s) | 262 |
| BstF5I | GGATG | 4 cut(s) | 55, 228, 358, 1027 |
| BstFNI | CGCG | 2 cut(s) | 413, 495 |
| BstHHI | GCGC | 1 cut(s) | 495 |
| BstKTI | GATC | 5 cut(s) | 145, 360, 688, 805, 1301 |
| BstMBI | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 653, 821 |
| BstNI | CCWGG | 3 cut(s) | 310, 861, 966 |
| BstNSI | RCATGY | 3 cut(s) | 82, 789, 1349 |
| BstPI | GGTNACC | 1 cut(s) | 262 |
| BstSCI | CCNGG | 3 cut(s) | 308, 859, 964 |
| BstSFI | CTRYAG | 1 cut(s) | 614 |
| BstUI | CGCG | 2 cut(s) | 413, 495 |
| BstV1I | GCAGC | 1 cut(s) | 836 |
| BstX2I | RGATCY | 3 cut(s) | 142, 685, 802 |
| BstYI | RGATCY | 3 cut(s) | 142, 685, 802 |
| BsuI | GTATCC | 1 cut(s) | 426 |
| BsuRI | GGCC | 4 cut(s) | 308, 696, 719, 1190 |
| BtsCI | GGATG | 4 cut(s) | 55, 228, 358, 1027 |
| BtsI | GCAGTG | 1 cut(s) | 541 |
| BtsIMutI | CAGTG | 3 cut(s) | 165, 541, 569 |
| BveI | ACCTGC | 1 cut(s) | 647 |
| Cac8I | GCNNGC | 2 cut(s) | 112, 116 |
| CfoI | GCGC | 1 cut(s) | 495 |
| Cfr10I | RCCGGY | 1 cut(s) | 1319 |
| CsiI | ACCWGGT | 1 cut(s) | 964 |
| CspAI | ACCGGT | 1 cut(s) | 1319 |
| DdeI | CTNAG | 2 cut(s) | 180, 1237 |
| DpnI | GATC | 5 cut(s) | 144, 359, 687, 804, 1300 |
| DpnII | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| Eam1104I | CTCTTC | 2 cut(s) | 600, 1055 |
| EarI | CTCTTC | 2 cut(s) | 600, 1055 |
| Eco147I | AGGCCT | 1 cut(s) | 719 |
| Eco57I | CTGAAG | 3 cut(s) | 624, 1079, 1317 |
| Eco91I | GGTNACC | 1 cut(s) | 262 |
| EcoO65I | GGTNACC | 1 cut(s) | 262 |
| EcoRII | CCWGG | 3 cut(s) | 308, 859, 964 |
| EcoT22I | ATGCAT | 1 cut(s) | 303 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 332, 364 |
| FaqI | GGGAC | 3 cut(s) | 379, 1082, 1356 |
| FblI | GTMKAC | 1 cut(s) | 75 |
| Fnu4HI | GCNGC | 2 cut(s) | 496, 825 |
| FokI | GGATG | 4 cut(s) | 62, 235, 365, 1014 |
| Fsp4HI | GCNGC | 2 cut(s) | 496, 825 |
| FspBI | CTAG | 4 cut(s) | 692, 806, 812, 828 |
| GlaI | GCGC | 1 cut(s) | 494 |
| GluI | GCNGC | 2 cut(s) | 496, 825 |
| GsaI | CCCAGC | 1 cut(s) | 705 |
| GsuI | CTGGAG | 1 cut(s) | 1100 |
| HaeIII | GGCC | 4 cut(s) | 308, 696, 719, 1190 |
| HapII | CCGG | 1 cut(s) | 1320 |
| HhaI | GCGC | 1 cut(s) | 495 |
| Hin6I | GCGC | 1 cut(s) | 493 |
| HinP1I | GCGC | 1 cut(s) | 493 |
| HinfI | GANTC | 6 cut(s) | 200, 407, 949, 1024, 1069, 1233 |
| HpaII | CCGG | 1 cut(s) | 1320 |
| HphI | GGTGA | 4 cut(s) | 274, 1149, 1261, 1318 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 833 |
| Hpy188I | TCNGA | 7 cut(s) | 30, 49, 653, 936, 1206, 1222, 1336 |
| Hpy188III | TCNNGA | 4 cut(s) | 245, 509, 806, 839 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 833 |
| HpyAV | CCTTC | 2 cut(s) | 227, 1333 |
| HpyCH4III | ACNGT | 3 cut(s) | 160, 268, 573 |
| HpyCH4IV | ACGT | 1 cut(s) | 560 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 653, 821 |
| HpyF3I | CTNAG | 2 cut(s) | 180, 1237 |
| HpySE526I | ACGT | 1 cut(s) | 560 |
| HspAI | GCGC | 1 cut(s) | 493 |
| Kzo9I | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| Lsp1109I | GCAGC | 1 cut(s) | 836 |
| LweI | GCATC | 2 cut(s) | 97, 1302 |
| MabI | ACCWGGT | 1 cut(s) | 964 |
| MaeI | CTAG | 4 cut(s) | 692, 806, 812, 828 |
| MaeII | ACGT | 1 cut(s) | 560 |
| MaeIII | GTNAC | 9 cut(s) | 148, 253, 262, 543, 556, 1070, 1116, 1155, 1249 |
| MalI | GATC | 5 cut(s) | 144, 359, 687, 804, 1300 |
| MboI | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| MboII | GAAGA | 3 cut(s) | 617, 680, 1072 |
| MfeI | CAATTG | 1 cut(s) | 1178 |
| MflI | RGATCY | 3 cut(s) | 142, 685, 802 |
| MluCI | AATT | 8 cut(s) | 420, 725, 997, 1004, 1108, 1178, 1223, 1369 |
| MlyI | GAGTC | 4 cut(s) | 209, 958, 1018, 1078 |
| MmeI | TCCRAC | 2 cut(s) | 410, 994 |
| MnlI | CCTC | 7 cut(s) | 408, 601, 709, 751, 897, 939, 1126 |
| Mph1103I | ATGCAT | 1 cut(s) | 303 |
| MseI | TTAA | 3 cut(s) | 273, 663, 1140 |
| MslI | CAYNNNNRTG | 1 cut(s) | 631 |
| MspA1I | CMGCKG | 1 cut(s) | 118 |
| MspI | CCGG | 1 cut(s) | 1320 |
| MspR9I | CCNGG | 3 cut(s) | 310, 861, 966 |
| MunI | CAATTG | 1 cut(s) | 1178 |
| Mva1269I | GAATGC | 1 cut(s) | 196 |
| MvaI | CCWGG | 3 cut(s) | 310, 861, 966 |
| MvnI | CGCG | 2 cut(s) | 413, 495 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 653, 821 |
| NdeII | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| NlaIV | GGNNCC | 1 cut(s) | 243 |
| NmuCI | GTSAC | 4 cut(s) | 262, 1070, 1155, 1249 |
| NsiI | ATGCAT | 1 cut(s) | 303 |
| NspI | RCATGY | 3 cut(s) | 82, 789, 1349 |
| PaqCI | CACCTGC | 1 cut(s) | 647 |
| PasI | CCCWGGG | 1 cut(s) | 860 |
| PceI | AGGCCT | 1 cut(s) | 719 |
| PciI | ACATGT | 2 cut(s) | 78, 1345 |
| PctI | GAATGC | 1 cut(s) | 196 |
| PfeI | GAWTC | 2 cut(s) | 407, 1233 |
| PinAI | ACCGGT | 1 cut(s) | 1319 |
| PkrI | GCNGC | 2 cut(s) | 497, 826 |
| PleI | GAGTC | 4 cut(s) | 208, 957, 1018, 1077 |
| PpsI | GAGTC | 4 cut(s) | 208, 957, 1018, 1077 |
| PscI | ACATGT | 2 cut(s) | 78, 1345 |
| Psp1406I | AACGTT | 1 cut(s) | 560 |
| Psp6I | CCWGG | 3 cut(s) | 308, 859, 964 |
| PspEI | GGTNACC | 1 cut(s) | 262 |
| PspFI | CCCAGC | 1 cut(s) | 701 |
| PspGI | CCWGG | 3 cut(s) | 308, 859, 964 |
| PspN4I | GGNNCC | 1 cut(s) | 243 |
| PstI | CTGCAG | 1 cut(s) | 618 |
| PsuI | RGATCY | 3 cut(s) | 142, 685, 802 |
| PvuII | CAGCTG | 1 cut(s) | 118 |
| RseI | CAYNNNNRTG | 1 cut(s) | 631 |
| SaqAI | TTAA | 3 cut(s) | 273, 663, 1140 |
| SatI | GCNGC | 2 cut(s) | 496, 825 |
| Sau3AI | GATC | 5 cut(s) | 142, 357, 685, 802, 1298 |
| SchI | GAGTC | 4 cut(s) | 209, 958, 1018, 1078 |
| ScrFI | CCNGG | 3 cut(s) | 310, 861, 966 |
| SexAI | ACCWGGT | 1 cut(s) | 964 |
| SfaNI | GCATC | 2 cut(s) | 97, 1302 |
| SfcI | CTRYAG | 1 cut(s) | 614 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 631 |
| Sse9I | AATT | 8 cut(s) | 420, 725, 997, 1004, 1108, 1178, 1223, 1369 |
| SseBI | AGGCCT | 1 cut(s) | 719 |
| SsiI | CCGC | 2 cut(s) | 411, 495 |
| SspI | AATATT | 1 cut(s) | 886 |
| SspMI | CTAG | 4 cut(s) | 692, 806, 812, 828 |
| StuI | AGGCCT | 1 cut(s) | 719 |
| StyD4I | CCNGG | 3 cut(s) | 308, 859, 964 |
| TaaI | ACNGT | 3 cut(s) | 160, 268, 573 |
| TaiI | ACGT | 1 cut(s) | 563 |
| TaqI | TCGA | 1 cut(s) | 530 |
| TasI | AATT | 8 cut(s) | 420, 725, 997, 1004, 1108, 1178, 1223, 1369 |
| TauI | GCSGC | 1 cut(s) | 498 |
| TfiI | GAWTC | 2 cut(s) | 407, 1233 |
| Tru1I | TTAA | 3 cut(s) | 273, 663, 1140 |
| Tru9I | TTAA | 3 cut(s) | 273, 663, 1140 |
| TscAI | CASTG | 3 cut(s) | 165, 541, 576 |
| TseFI | GTSAC | 4 cut(s) | 262, 1070, 1155, 1249 |
| TseI | GCWGC | 1 cut(s) | 824 |
| Tsp45I | GTSAC | 4 cut(s) | 262, 1070, 1155, 1249 |
| TspDTI | ATGAA | 4 cut(s) | 5, 57, 246, 785 |
| TspGWI | ACGGA | 1 cut(s) | 1297 |
| TspRI | CASTG | 3 cut(s) | 165, 541, 576 |
| XapI | RAATTY | 1 cut(s) | 1108 |
| XbaI | TCTAGA | 1 cut(s) | 805 |
| XceI | RCATGY | 3 cut(s) | 82, 789, 1349 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1010 |
| XmiI | GTMKAC | 1 cut(s) | 75 |
| XspI | CTAG | 4 cut(s) | 692, 806, 812, 828 |
| Zsp2I | ATGCAT | 1 cut(s) | 303 |