RLG00000023931

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
30203206 .. 30206334
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023931

Sequence Viewer

Length: 1821 bp
ATGCTCAAATTGAAAAACCAGGCATTCCTTATTCAAAACCATGGCATGCCTAGAATCTCCAAGTTTACTTCAGCAGCTGCCTTAGCTGATACCACAATTACCCAGCCCCTTACACAGGAAGTGCCACAGCCTCGATTTCAACCGTTGTCTTCGGACCCCGAATTCTTCATCACTGCCCTGCTGAGCTCTAGAAACATCTTTCATATTAGACAACTCCATGCCCAAGTTGCTGTCAATGGAATCCTCCAAAACCTCACTGTTGCAAACAAGCTCCTCTACATGTATGCACAGCATAAGGTGTTGGGTGACGCTTATGCTCTGTTTAGTGGGATGGTGGAAAAGAATGCAGTTTCTTGGAGTGTAATGGTTGGTGGGTTTGTGAAGGGTGGTGATTTTGCTAATGGTTTTAGAACATTTAGGGATCTCATTCGATGTGGGATGCCGCCGGATAATTACACATTGCCTTTTGTGATAAGGGCTTGTAGGGATTTGATGGACCTGAAAATTGGCAGGTTGGTTCATGACATTGTTCTGAAACATGGGATGCTTTCGGATAATTTTGTTTGTGCTGCTCTGGTGGACATGTATGCGAAATGTAGGGTTATAGATGATGCCCGCCAGCTGTTTGATAATATGCCTAGCAGGGATATTGTAACATGGACAGTGATGATTGGTGGGTTTGCTGAGTGCAGGAATGCGAGTGGGTCTTTGGTTCTGTTTGATAGGATGATAGATGAAGGTGTTGTTCCAGATAAGGTTACTATGGTGACTGTTGTTAATGCTTGTGCAAAGTTTGGTGCTATGCATAAGGCCAGACTTGTTCATGATTATCTACGTAGGAATAAGTTTTACTTGGATGTGATCTTGGGGACGGCGATGATTGATATGTATGCTAAGTGTGGGTGTGTTGATTCCGCAAGGGAAATTTTCGACAGGATGCAAGTGAGGAATGTTAGAACATGGAGTGCCCTGATTGCGGCTTATGGTTACCATGGGCGCGGCAAGGAAGCTCTTGAGATATTTGAGATGATGTTGAGCAGTGGAGTGTTACCAAATGCAGTTACATTTATTTCACTATTATATGCTTGTAGTCATGCTGGCTTGACTGAAGAGGGACTGCGGTTTTTCTCATTGATGTGGGATGAATATGCCGTCAGAGCAGATGTTAAACATTATACTTGTATGGTGGATCTTCTGGGTCGTGCTGGGAAACTTGATGAGGCCTTGAAATTGGCGGAGAGTATGGCAGTTGAGAAAGATGAGGGGTTATGGAGTGCTTTGCTTGGGGCATGTAGAGTCCATGGGAATATAGACCTAGCAGAAAAGGCAGCTAGTTCACTGCTTGAACTACAGCCCGAAAACCCAGGGCATTACGTATTGCTTTCAAATATTTATGCAAGAGCAGGGAGGTGGAAAGAAGTGGCGAAGATGAGAAATCTGATGACCCAGAGGAGACTAAAGAAAATTCCTGGTTATACTTGGATTGAGATAAATGACAAAAACTACCAATTTGGTGTTGCTGATAGAACTCATCCACAATCAGAAAACATTTATGCTATGCTGAAGAGTTTGAGTCACAAACTGGAGTTGGCTGGTTATGTCCCTGATACGAATTTTGTGTTGCATGATGTTGATGAGGAAGTTAAAGTGGATATGTTGTACACCCATAGTGAGAAGCTGGCAATTGCATTTGGCCTTATCGCCACTTCTGATGGAACTCCTATTAGAATTACAAAGAATCTTAGGGGAAGGGAACTGCTCATGTGGAGATTATTGGTAATTGAAGTTTGTTTTACCAAGGCAGAAAGGTTGCTTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

68.24

Weight (kDa)

8.45

Isoelectric Point (pI)

38.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 215 - 264 2.2e-08 PPR repeat family
PPR_2 PF13041 317 - 364 3.7e-10 PPR repeat family
PPR PF01535 320 - 349 5.4e-07 PPR repeat
E_motif PF20431 434 - 496 3.4e-24 E motif
DYW_deaminase PF14432 532 - 582 9.3e-18 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015656)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 501
AccII CGCG 1 cut(s) 999
AciI CCGC 7 cut(s) 443, 616, 915, 977, 999, 1120, 1235
AclWI GGATC 2 cut(s) 429, 1197
AcsI RAATTY 4 cut(s) 161, 924, 1464, 1612
AcuI CTGAAG 3 cut(s) 54, 1128, 1583
AfaI GTAC 1 cut(s) 1661
AfiI CCNNNNNNNGG 2 cut(s) 115, 976
AflIII ACRYGT 2 cut(s) 279, 582
AgsI TTSAA 7 cut(s) 13, 35, 140, 1228, 1346, 1386, 1784
AjnI CCWGG 3 cut(s) 18, 1363, 1468
AluBI AGCT 8 cut(s) 77, 86, 186, 271, 622, 1010, 1331, 1678
AluI AGCT 8 cut(s) 77, 86, 186, 271, 622, 1010, 1331, 1678
Alw21I GWGCWC 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 1447
AlwI GGATC 2 cut(s) 429, 1197
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 3 cut(s) 810, 1221, 1693
ApeKI GCWGC 4 cut(s) 74, 77, 569, 1328
ApoI RAATTY 4 cut(s) 161, 924, 1464, 1612
AspLEI GCGC 1 cut(s) 999
AspS9I GGNCC 2 cut(s) 154, 496
AsuHPI GGTGA 3 cut(s) 317, 401, 778
AvaII GGWCC 2 cut(s) 154, 496
BaeGI GKGCMC 1 cut(s) 970
BanII GRGCYC 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 188
BbvI GCAGC 4 cut(s) 64, 86, 556, 1340
BccI CCATC 3 cut(s) 325, 487, 1706
BceAI ACGGC 2 cut(s) 888, 1136
BciT130I CCWGG 3 cut(s) 20, 1365, 1470
BcoDI GTCTC 1 cut(s) 1447
BfaI CTAG 5 cut(s) 51, 189, 639, 1316, 1332
BfmI CTRYAG 1 cut(s) 1349
BfuAI ACCTGC 1 cut(s) 501
BisI GCNGC 7 cut(s) 75, 78, 443, 570, 978, 1000, 1329
BlpI GCTNAGC 1 cut(s) 182
BlsI GCNGC 7 cut(s) 76, 79, 444, 571, 979, 1001, 1330
Bme1390I CCNGG 3 cut(s) 20, 1365, 1470
Bme18I GGWCC 2 cut(s) 154, 496
BmgT120I GGNCC 2 cut(s) 154, 496
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 3 cut(s) 20, 1365, 1470
BmsI GCATC 4 cut(s) 429, 534, 601, 927
BpiI GAAGAC 1 cut(s) 141
BpmI CTGGAG 1 cut(s) 1604
Bpu10I CCTNAGC 1 cut(s) 82
Bpu1102I GCTNAGC 1 cut(s) 182
BpuEI CTTGAG 1 cut(s) 1034
BsaAI YACGTR 2 cut(s) 836, 1375
BsaJI CCNNGG 6 cut(s) 40, 991, 1300, 1363, 1364, 1797
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 976
Bse1I ACTGG 1 cut(s) 1587
Bse3DI GCAATG 1 cut(s) 458
BseBI CCWGG 3 cut(s) 20, 1365, 1470
BseDI CCNNGG 6 cut(s) 40, 991, 1300, 1363, 1364, 1797
BseGI GGATG 8 cut(s) 336, 444, 549, 732, 862, 942, 1147, 1531
BseLI CCNNNNNNNGG 2 cut(s) 115, 976
BseMI GCAATG 1 cut(s) 458
BseMII CTCAG 2 cut(s) 173, 675
BseNI ACTGG 1 cut(s) 1587
BseRI GAGGAG 2 cut(s) 263, 1465
BseSI GKGCMC 1 cut(s) 970
BseXI GCAGC 4 cut(s) 64, 86, 556, 1340
BseYI CCCAGC 2 cut(s) 102, 1205
BsgI GTGCAG 1 cut(s) 709
Bsh1236I CGCG 1 cut(s) 999
BshFI GGCC 3 cut(s) 812, 1223, 1695
BsiHKAI GWGCWC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 446
BslFI GGGAC 3 cut(s) 883, 1128, 1586
BslI CCNNNNNNNGG 2 cut(s) 115, 976
BsmAI GTCTC 1 cut(s) 1447
BsmFI GGGAC 3 cut(s) 883, 1128, 1586
BsmI GAATGC 3 cut(s) 23, 349, 700
BsnI GGCC 3 cut(s) 812, 1223, 1695
Bsp1286I GDGCHC 2 cut(s) 188, 970
Bsp1407I TGTACA 1 cut(s) 1659
Bsp143I GATC 3 cut(s) 421, 861, 1189
Bsp1720I GCTNAGC 1 cut(s) 182
Bsp19I CCATGG 3 cut(s) 40, 991, 1300
BspACI CCGC 7 cut(s) 443, 616, 915, 977, 999, 1120, 1235
BspANI GGCC 3 cut(s) 812, 1223, 1695
BspCNI CTCAG 2 cut(s) 174, 676
BspFNI CGCG 1 cut(s) 999
BspHI TCATGA 2 cut(s) 520, 823
BspLI GGNNCC 1 cut(s) 156
BspMI ACCTGC 1 cut(s) 501
BspPI GGATC 2 cut(s) 429, 1197
BsrDI GCAATG 1 cut(s) 458
BsrGI TGTACA 1 cut(s) 1659
BsrI ACTGG 1 cut(s) 1587
BssECI CCNNGG 6 cut(s) 40, 991, 1300, 1363, 1364, 1797
BssMI GATC 3 cut(s) 421, 861, 1189
BssT1I CCWWGG 4 cut(s) 40, 991, 1300, 1797
Bst2UI CCWGG 3 cut(s) 20, 1365, 1470
Bst4CI ACNGT 4 cut(s) 144, 259, 664, 772
Bst6I CTCTTC 2 cut(s) 1104, 1559
BstAUI TGTACA 1 cut(s) 1659
BstBAI YACGTR 2 cut(s) 836, 1375
BstC8I GCNNGC 5 cut(s) 47, 616, 620, 1099, 1680
BstDEI CTNAG 5 cut(s) 82, 182, 684, 894, 1742
BstDSI CCRYGG 3 cut(s) 40, 991, 1300
BstEII GGTNACC 1 cut(s) 986
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 8 cut(s) 336, 444, 549, 732, 862, 942, 1147, 1531
BstFNI CGCG 1 cut(s) 999
BstHHI GCGC 1 cut(s) 999
BstKTI GATC 3 cut(s) 424, 864, 1192
BstMAI GTCTC 1 cut(s) 1447
BstMBI GATC 3 cut(s) 421, 861, 1189
BstMWI GCNNNNNNNGC 5 cut(s) 83, 227, 974, 1157, 1325
BstNI CCWGG 3 cut(s) 20, 1365, 1470
BstNSI RCATGY 4 cut(s) 49, 283, 586, 1293
BstPI GGTNACC 1 cut(s) 986
BstSCI CCNGG 3 cut(s) 18, 1363, 1468
BstSFI CTRYAG 1 cut(s) 1349
BstSLI GKGCMC 1 cut(s) 970
BstSNI TACGTA 2 cut(s) 836, 1375
BstUI CGCG 1 cut(s) 999
BstV1I GCAGC 4 cut(s) 64, 86, 556, 1340
BstV2I GAAGAC 1 cut(s) 141
BstX2I RGATCY 2 cut(s) 421, 1189
BstYI RGATCY 2 cut(s) 421, 1189
BsuRI GGCC 3 cut(s) 812, 1223, 1695
BtgI CCRYGG 3 cut(s) 40, 991, 1300
BtgZI GCGATG 1 cut(s) 890
BtsCI GGATG 8 cut(s) 336, 444, 549, 732, 862, 942, 1147, 1531
BtsI GCAGTG 3 cut(s) 171, 1045, 1337
BtsIMutI CAGTG 5 cut(s) 171, 255, 669, 1045, 1337
BveI ACCTGC 1 cut(s) 501
Cac8I GCNNGC 5 cut(s) 47, 616, 620, 1099, 1680
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 2 cut(s) 520, 823
CfoI GCGC 1 cut(s) 999
Cfr13I GGNCC 2 cut(s) 154, 496
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 1660
CviQI GTAC 1 cut(s) 1660
DdeI CTNAG 5 cut(s) 82, 182, 684, 894, 1742
DpnI GATC 3 cut(s) 423, 863, 1191
DpnII GATC 3 cut(s) 421, 861, 1189
Eam1104I CTCTTC 2 cut(s) 1104, 1559
EarI CTCTTC 2 cut(s) 1104, 1559
EciI GGCGGA 1 cut(s) 1250
Ecl136II GAGCTC 1 cut(s) 186
Eco105I TACGTA 2 cut(s) 836, 1375
Eco130I CCWWGG 4 cut(s) 40, 991, 1300, 1797
Eco147I AGGCCT 1 cut(s) 1223
Eco24I GRGCYC 1 cut(s) 188
Eco47I GGWCC 2 cut(s) 154, 496
Eco53kI GAGCTC 1 cut(s) 186
Eco57I CTGAAG 3 cut(s) 54, 1128, 1583
Eco91I GGTNACC 1 cut(s) 986
EcoICRI GAGCTC 1 cut(s) 186
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO65I GGTNACC 1 cut(s) 986
EcoRI GAATTC 1 cut(s) 161
EcoRII CCWGG 3 cut(s) 18, 1363, 1468
EcoT14I CCWWGG 4 cut(s) 40, 991, 1300, 1797
EcoT22I ATGCAT 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 4 cut(s) 40, 991, 1300, 1797
FalI AAGNNNNNCTT 2 cut(s) 836, 868
FaqI GGGAC 3 cut(s) 883, 1128, 1586
FauI CCCGC 1 cut(s) 623
Fnu4HI GCNGC 7 cut(s) 75, 78, 443, 570, 978, 1000, 1329
FokI GGATG 8 cut(s) 343, 451, 556, 739, 869, 949, 1154, 1518
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 7 cut(s) 75, 78, 443, 570, 978, 1000, 1329
FspBI CTAG 5 cut(s) 51, 189, 639, 1316, 1332
GlaI GCGC 1 cut(s) 998
GluI GCNGC 7 cut(s) 75, 78, 443, 570, 978, 1000, 1329
GsaI CCCAGC 2 cut(s) 106, 1209
GsuI CTGGAG 1 cut(s) 1604
HaeIII GGCC 3 cut(s) 812, 1223, 1695
HapII CCGG 1 cut(s) 446
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 999
Hin6I GCGC 1 cut(s) 997
HinP1I GCGC 1 cut(s) 997
HinfI GANTC 6 cut(s) 54, 240, 911, 1296, 1573, 1738
HpaII CCGG 1 cut(s) 446
HphI GGTGA 3 cut(s) 317, 401, 778
Hpy166II GTNNAC 4 cut(s) 66, 580, 1337, 1662
Hpy188I TCNGA 7 cut(s) 154, 534, 553, 1157, 1440, 1543, 1711
Hpy188III TCNNGA 5 cut(s) 189, 521, 749, 824, 1013
Hpy8I GTNNAC 4 cut(s) 66, 580, 1337, 1662
HpyAV CCTTC 3 cut(s) 376, 731, 1743
HpyCH4III ACNGT 4 cut(s) 144, 259, 664, 772
HpyCH4IV ACGT 2 cut(s) 835, 1374
HpyF10VI GCNNNNNNNGC 5 cut(s) 83, 227, 974, 1157, 1325
HpyF3I CTNAG 5 cut(s) 82, 182, 684, 894, 1742
HpySE526I ACGT 2 cut(s) 835, 1374
HspAI GCGC 1 cut(s) 997
Kzo9I GATC 3 cut(s) 421, 861, 1189
LmnI GCTCC 1 cut(s) 276
Lsp1109I GCAGC 4 cut(s) 64, 86, 556, 1340
LweI GCATC 4 cut(s) 429, 534, 601, 927
MaeI CTAG 5 cut(s) 51, 189, 639, 1316, 1332
MaeII ACGT 2 cut(s) 835, 1374
MaeIII GTNAC 8 cut(s) 305, 652, 757, 766, 986, 1047, 1060, 1574
MalI GATC 3 cut(s) 423, 863, 1191
MboI GATC 3 cut(s) 421, 861, 1189
MboII GAAGA 6 cut(s) 141, 157, 1121, 1184, 1438, 1576
MfeI CAATTG 1 cut(s) 1683
MflI RGATCY 2 cut(s) 421, 1189
MhlI GDGCHC 2 cut(s) 188, 970
MlyI GAGTC 2 cut(s) 1305, 1582
Mph1103I ATGCAT 1 cut(s) 807
MseI TTAA 3 cut(s) 777, 1167, 1644
MslI CAYNNNNRTG 1 cut(s) 1135
MspA1I CMGCKG 2 cut(s) 77, 622
MspI CCGG 1 cut(s) 446
MspR9I CCNGG 3 cut(s) 20, 1365, 1470
MunI CAATTG 1 cut(s) 1683
Mva1269I GAATGC 3 cut(s) 23, 349, 700
MvaI CCWGG 3 cut(s) 20, 1365, 1470
MvnI CGCG 1 cut(s) 999
MwoI GCNNNNNNNGC 5 cut(s) 83, 227, 974, 1157, 1325
NcoI CCATGG 3 cut(s) 40, 991, 1300
NdeII GATC 3 cut(s) 421, 861, 1189
NlaIV GGNNCC 1 cut(s) 156
NmuCI GTSAC 3 cut(s) 305, 766, 1574
NsiI ATGCAT 1 cut(s) 807
NspI RCATGY 4 cut(s) 49, 283, 586, 1293
PaeI GCATGC 1 cut(s) 49
PagI TCATGA 2 cut(s) 520, 823
PasI CCCWGGG 1 cut(s) 1364
PceI AGGCCT 1 cut(s) 1223
PciI ACATGT 2 cut(s) 279, 582
PctI GAATGC 3 cut(s) 23, 349, 700
PfeI GAWTC 4 cut(s) 54, 240, 911, 1738
PkrI GCNGC 7 cut(s) 76, 79, 444, 571, 979, 1001, 1330
PleI GAGTC 2 cut(s) 1304, 1581
PpsI GAGTC 2 cut(s) 1304, 1581
Ppu21I YACGTR 2 cut(s) 836, 1375
PscI ACATGT 2 cut(s) 279, 582
Psp124BI GAGCTC 1 cut(s) 188
Psp6I CCWGG 3 cut(s) 18, 1363, 1468
PspEI GGTNACC 1 cut(s) 986
PspFI CCCAGC 2 cut(s) 102, 1205
PspGI CCWGG 3 cut(s) 18, 1363, 1468
PspN4I GGNNCC 1 cut(s) 156
PspPI GGNCC 2 cut(s) 154, 496
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 421, 1189
PvuII CAGCTG 2 cut(s) 77, 622
RsaI GTAC 1 cut(s) 1661
RsaNI GTAC 1 cut(s) 1660
RseI CAYNNNNRTG 1 cut(s) 1135
SacI GAGCTC 1 cut(s) 188
SaqAI TTAA 3 cut(s) 777, 1167, 1644
SatI GCNGC 7 cut(s) 75, 78, 443, 570, 978, 1000, 1329
Sau3AI GATC 3 cut(s) 421, 861, 1189
Sau96I GGNCC 2 cut(s) 154, 496
SchI GAGTC 2 cut(s) 1305, 1582
ScrFI CCNGG 3 cut(s) 20, 1365, 1470
SduI GDGCHC 2 cut(s) 188, 970
SfaNI GCATC 4 cut(s) 429, 534, 601, 927
SfcI CTRYAG 1 cut(s) 1349
SinI GGWCC 2 cut(s) 154, 496
SmiMI CAYNNNNRTG 1 cut(s) 1135
SmlI CTYRAG 1 cut(s) 1013
SmoI CTYRAG 1 cut(s) 1013
SnaBI TACGTA 2 cut(s) 836, 1375
SphI GCATGC 1 cut(s) 49
SseBI AGGCCT 1 cut(s) 1223
SsiI CCGC 7 cut(s) 443, 616, 915, 977, 999, 1120, 1235
SspI AATATT 1 cut(s) 1390
SspMI CTAG 5 cut(s) 51, 189, 639, 1316, 1332
SstI GAGCTC 1 cut(s) 188
StuI AGGCCT 1 cut(s) 1223
StyD4I CCNGG 3 cut(s) 18, 1363, 1468
StyI CCWWGG 4 cut(s) 40, 991, 1300, 1797
TaaI ACNGT 4 cut(s) 144, 259, 664, 772
TaiI ACGT 2 cut(s) 838, 1377
TaqI TCGA 3 cut(s) 133, 430, 930
TatI WGTACW 1 cut(s) 1659
TauI GCSGC 3 cut(s) 445, 980, 1002
TfiI GAWTC 4 cut(s) 54, 240, 911, 1738
Tru1I TTAA 3 cut(s) 777, 1167, 1644
Tru9I TTAA 3 cut(s) 777, 1167, 1644
TscAI CASTG 5 cut(s) 178, 262, 669, 1045, 1344
TseFI GTSAC 3 cut(s) 305, 766, 1574
TseI GCWGC 4 cut(s) 74, 77, 569, 1328
Tsp45I GTSAC 3 cut(s) 305, 766, 1574
TspDTI ATGAA 6 cut(s) 157, 191, 509, 750, 812, 1158
TspRI CASTG 5 cut(s) 178, 262, 669, 1045, 1344
VpaK11BI GGWCC 2 cut(s) 154, 496
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 4 cut(s) 161, 924, 1464, 1612
XbaI TCTAGA 1 cut(s) 188
XceI RCATGY 4 cut(s) 49, 283, 586, 1293
XspI CTAG 5 cut(s) 51, 189, 639, 1316, 1332
Zsp2I ATGCAT 1 cut(s) 807
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.