pycom12g02690

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0015656
Physical Location & Seq
Forward (+)
2437458 .. 2438969
1512 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02690.1

Sequence Viewer

Length: 1512 bp
ATGGTTGGTGGGTTTGTGAAGGCTGGTGATTTTACCAATGGTTTTGCAACATTTAGGGAGCTTATTCGAGGCGGTGTTTCGCCGGATAACTATACGTTGCCTTTTGTGATTAGGGTTTGTAGGGATTTGATGGACCTGCAAATGGGCAGGTTGGTTCATGGCATTGTGTTGAAACATGGGTTGGTTTCGGATAATTTTGTTTGCGCTGCGCTCGTGGACATGTATGCAAAATGTACTGTTATCGATGATGCCCGCCAACTGTTTGATAATATGCAGAGCAGGGATCTTGTGAGTTGGACAGTGATGATTGGTGCATTTGCTGAGTGCAGGAATGCTGATGAGGCTTTGGTTTTGTTTGATCGGATGGTTGATGAAGGTGTTTTAGCCGATAAGGTTGCTATGGCTACTGTTGTTAATGCTTGTGCAAAATTGGGGGCTATGCATAAAGCCAGGCTTGTTCATGATTATATATTTAGGAATAAGTTTTCGTTGGATGTGATCTTAGGAACGGCGATGATTGATATGTATGCTAAGTGCGGATGTGTTGATTCTGCTAGGGAAATTTTTGATAGGATGCACATAAAGAATGTTATAACATGGAGTGCTATGATTGCAGCTTATGGTTATCATGGGCACGGCCGAAAAGCTATTGATATTTTTGAAATGATGTTAAGCAGTGGAGTGTCACCAAATGCAATAACTTTTATTTCGCTATTATATGCTTGTAGTCATTCAGGCTTGATCGAAGAGGGTCTTCGGTTTTTCTCTTCGATGTGGGATGAATATGCTGTCAGAGCAGATGTCAAACATTATACTTGTATGGTTGATCTCTTGGGCCGTGCTGGGAGACTTGATGACGCCTTAAAATTAGTCGAGAGCACGGCAGTTGAGAAAGATGAGGGGTTATGGGGAGCTTTTCTTGGCGCATGTAGAATCCATGGAAATGTAGACCTGGCAAAAAAGGTAGTGAATTCTCTTCTTGAACTACAGCCAGAAAACGCGGGGCATTATGTATTGCTTTCAAATATATATGCACGAGAAGGTAGGTGGAAGGAAATGTCAAAAATGAGAGATCTGATGACCCAGAGGAAACTGAAGAAAATTCCGGGTTTGACTTGGATTGAAGTGGATAACAAAAGTTACCAATTTAGCGTGGGCGATAGGTCTCATCCATGGTCAGAAAAGATTTATGCGATGATCAAGAGTTTGAATGAGAAGTTGGAGCTGGCTGGTTATGTCCCTGATACAAATTTTGTGTTACATGATGTTGACGAGGAAGTGAAGTTGGGTATGTTGTCTTCACATAGTGAGAAGTTGGCAATTGCATTTGGTCTTCTTGCCACTGCTGATGGAACTCCGATCAGAATTACAAAAAATCTTAGGGTTTGTGGTGACTGCCACTCGTTTATCAAGTTTGTATCGGCTATAACACAAAGGGTTATCATTGTTCGAGATGCAAATCGGTTTCACCACTTCAAAGAAGGGGCATGCTCATGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

504

Amino Acids

56.31

Weight (kDa)

6.63

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 95 - 143 2.2e-07 PPR repeat family
PPR PF01535 97 - 127 1.5e-06 PPR repeat
PPR_2 PF13041 195 - 243 3.4e-11 PPR repeat family
PPR PF01535 198 - 228 1.9e-06 PPR repeat
E_motif PF20431 313 - 375 2.8e-21 E motif
DYW_deaminase PF14432 411 - 503 5.7e-45 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19240 FvH4_6g19240 FvH4_6g19240
malus_domestica MD12G1028100.v1.1
prunus_persica Prupe.7G103500_v2.0.a1
pyrus_communis pycom12g02690
rosa_chinensis RchiOBHm_Chr3g0474341
rosa_laevigata RLG00000023931
rosa_multiflora Rmu_sc0000098.1_g000006 Rmu_sc0004507.1_g000010 Rmu_sc0031141.1_g000001
rosa_roxburghii Rroxscaffold_6G00407330
rosa_rugosa Rorug03G0140200
rosa_samantha Rh3BG220200 Rh3DG215900
rosa_wichuraiana Rw3G017420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 593
Acc36I ACCTGC 2 cut(s) 138, 144
AccI GTMKAC 1 cut(s) 948
AccII CGCG 1 cut(s) 1001
AciI CCGC 4 cut(s) 72, 253, 537, 1001
AclWI GGATC 1 cut(s) 291
AcoI YGGCCR 1 cut(s) 637
AcsI RAATTY 4 cut(s) 561, 970, 1101, 1249
AcuI CTGAAG 1 cut(s) 1115
AcyI GRCGYC 1 cut(s) 858
AdeI CACNNNGTG 1 cut(s) 1307
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 142
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 7 cut(s) 172, 662, 983, 1023, 1124, 1210, 1477
AjnI CCWGG 2 cut(s) 449, 951
AjuI GAANNNNNNNTTGG 4 cut(s) 164, 196, 1202, 1234
AluBI AGCT 5 cut(s) 61, 617, 647, 914, 1225
AluI AGCT 5 cut(s) 61, 617, 647, 914, 1225
Alw21I GWGCWC 1 cut(s) 881
Alw26I GTCTC 2 cut(s) 841, 1170
AlwI GGATC 1 cut(s) 291
AoxI GGCC 2 cut(s) 637, 835
ApeKI GCWGC 2 cut(s) 206, 614
ApoI RAATTY 4 cut(s) 561, 970, 1101, 1249
AspLEI GCGC 3 cut(s) 206, 211, 926
AspS9I GGNCC 2 cut(s) 133, 835
AsuC2I CCSGG 1 cut(s) 1107
AsuHPI GGTGA 4 cut(s) 38, 678, 1403, 1460
AvaII GGWCC 1 cut(s) 133
BaeGI GKGCMC 1 cut(s) 636
BarI GAAGNNNNNNTAC 2 cut(s) 1282, 1314
BauI CACGAG 2 cut(s) 212, 1035
BbsI GAAGAC 3 cut(s) 746, 1290, 1325
Bbv12I GWGCWC 1 cut(s) 881
BbvI GCAGC 2 cut(s) 193, 626
BccI CCATC 3 cut(s) 124, 358, 1343
BceAI ACGGC 4 cut(s) 525, 652, 822, 897
BcgI CGANNNNNNTGC 2 cut(s) 377, 411
BciT130I CCWGG 2 cut(s) 451, 953
BclI TGATCA 1 cut(s) 1197
BcnI CCSGG 1 cut(s) 1107
BcoDI GTCTC 2 cut(s) 841, 1170
BfaI CTAG 1 cut(s) 555
BfmI CTRYAG 1 cut(s) 986
BfuAI ACCTGC 2 cut(s) 138, 144
BglII AGATCT 1 cut(s) 1072
BisI GCNGC 2 cut(s) 207, 615
BlsI GCNGC 2 cut(s) 208, 616
Bme1390I CCNGG 3 cut(s) 451, 953, 1107
Bme18I GGWCC 1 cut(s) 133
BmgT120I GGNCC 2 cut(s) 133, 835
BmrFI CCNGG 3 cut(s) 451, 953, 1107
BmsI GCATC 3 cut(s) 238, 564, 1444
BpiI GAAGAC 3 cut(s) 746, 1290, 1325
BpuMI CCSGG 1 cut(s) 1107
Bsa29I ATCGAT 1 cut(s) 243
BsaBI GATNNNNATC 1 cut(s) 1458
BsaHI GRCGYC 1 cut(s) 858
BsaI GGTCTC 1 cut(s) 1170
BsaJI CCNNGG 2 cut(s) 937, 1172
Bsc4I CCNNNNNNNGG 1 cut(s) 142
Bse8I GATNNNNATC 1 cut(s) 1458
BseBI CCWGG 2 cut(s) 451, 953
BseCI ATCGAT 1 cut(s) 243
BseDI CCNNGG 2 cut(s) 937, 1172
BseGI GGATG 6 cut(s) 369, 499, 545, 579, 784, 1168
BseJI GATNNNNATC 1 cut(s) 1458
BseLI CCNNNNNNNGG 1 cut(s) 142
BseMII CTCAG 1 cut(s) 312
BseSI GKGCMC 1 cut(s) 636
BseX3I CGGCCG 1 cut(s) 637
BseXI GCAGC 2 cut(s) 193, 626
BseYI CCCAGC 1 cut(s) 842
BsgI GTGCAG 1 cut(s) 346
Bsh1236I CGCG 1 cut(s) 1001
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 2 cut(s) 639, 837
BshVI ATCGAT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 640
BsiHKAI GWGCWC 1 cut(s) 881
BsiSI CCGG 2 cut(s) 83, 1106
BslFI GGGAC 1 cut(s) 1223
BslI CCNNNNNNNGG 1 cut(s) 142
BsmAI GTCTC 2 cut(s) 841, 1170
BsmFI GGGAC 1 cut(s) 1223
BsmI GAATGC 1 cut(s) 337
BsnI GGCC 2 cut(s) 639, 837
Bso31I GGTCTC 1 cut(s) 1170
Bsp1286I GDGCHC 2 cut(s) 636, 881
Bsp143I GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
Bsp19I CCATGG 2 cut(s) 937, 1172
BspACI CCGC 4 cut(s) 72, 253, 537, 1001
BspANI GGCC 2 cut(s) 639, 837
BspCNI CTCAG 1 cut(s) 313
BspDI ATCGAT 1 cut(s) 243
BspFNI CGCG 1 cut(s) 1001
BspHI TCATGA 1 cut(s) 460
BspMI ACCTGC 2 cut(s) 138, 144
BspPI GGATC 1 cut(s) 291
BspTNI GGTCTC 1 cut(s) 1170
BssECI CCNNGG 2 cut(s) 937, 1172
BssMI GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
BssNI GRCGYC 1 cut(s) 858
BssSI CACGAG 2 cut(s) 212, 1035
BssT1I CCWWGG 2 cut(s) 937, 1172
Bst2BI CACGAG 2 cut(s) 212, 1035
Bst2UI CCWGG 2 cut(s) 451, 953
Bst4CI ACNGT 4 cut(s) 238, 261, 301, 409
Bst6I CTCTTC 3 cut(s) 741, 772, 981
BstACI GRCGYC 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 253, 1227, 1489
BstDEI CTNAG 4 cut(s) 321, 502, 531, 1379
BstDSI CCRYGG 2 cut(s) 937, 1172
BstF5I GGATG 6 cut(s) 369, 499, 545, 579, 784, 1168
BstFNI CGCG 1 cut(s) 1001
BstHHI GCGC 3 cut(s) 206, 211, 926
BstKTI GATC 8 cut(s) 286, 361, 501, 744, 829, 1075, 1200, 1362
BstMAI GTCTC 2 cut(s) 841, 1170
BstMBI GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 3 cut(s) 341, 611, 794
BstNI CCWGG 2 cut(s) 451, 953
BstNSI RCATGY 3 cut(s) 223, 930, 1491
BstSCI CCNGG 3 cut(s) 449, 951, 1105
BstSFI CTRYAG 1 cut(s) 986
BstSLI GKGCMC 1 cut(s) 636
BstUI CGCG 1 cut(s) 1001
BstV1I GCAGC 2 cut(s) 193, 626
BstV2I GAAGAC 3 cut(s) 746, 1290, 1325
BstX2I RGATCY 2 cut(s) 283, 1072
BstYI RGATCY 2 cut(s) 283, 1072
BstZI CGGCCG 1 cut(s) 637
Bsu15I ATCGAT 1 cut(s) 243
BsuRI GGCC 2 cut(s) 639, 837
BsuTUI ATCGAT 1 cut(s) 243
BtgI CCRYGG 2 cut(s) 937, 1172
BtgZI GCGATG 2 cut(s) 527, 1208
BtsCI GGATG 6 cut(s) 369, 499, 545, 579, 784, 1168
BtsI GCAGTG 2 cut(s) 682, 1341
BtsIMutI CAGTG 3 cut(s) 306, 682, 1341
BveI ACCTGC 2 cut(s) 138, 144
Cac8I GCNNGC 3 cut(s) 253, 1227, 1489
CciI TCATGA 1 cut(s) 460
CfoI GCGC 3 cut(s) 206, 211, 926
Cfr13I GGNCC 2 cut(s) 133, 835
ClaI ATCGAT 1 cut(s) 243
CseI GACGC 1 cut(s) 866
Csp6I GTAC 1 cut(s) 234
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 4 cut(s) 321, 502, 531, 1379
DpnI GATC 8 cut(s) 285, 360, 500, 743, 828, 1074, 1199, 1361
DpnII GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
DraIII CACNNNGTG 1 cut(s) 1307
EaeI YGGCCR 1 cut(s) 637
EagI CGGCCG 1 cut(s) 637
Eam1104I CTCTTC 3 cut(s) 741, 772, 981
EarI CTCTTC 3 cut(s) 741, 772, 981
EclXI CGGCCG 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 937, 1172
Eco31I GGTCTC 1 cut(s) 1170
Eco47I GGWCC 1 cut(s) 133
Eco52I CGGCCG 1 cut(s) 637
Eco57I CTGAAG 1 cut(s) 1115
EcoRI GAATTC 1 cut(s) 970
EcoRII CCWGG 2 cut(s) 449, 951
EcoT14I CCWWGG 2 cut(s) 937, 1172
EcoT22I ATGCAT 1 cut(s) 444
ErhI CCWWGG 2 cut(s) 937, 1172
FalI AAGNNNNNCTT 4 cut(s) 438, 470, 738, 770
FaqI GGGAC 1 cut(s) 1223
FauI CCCGC 2 cut(s) 260, 994
FbaI TGATCA 1 cut(s) 1197
FblI GTMKAC 1 cut(s) 948
Fnu4HI GCNGC 2 cut(s) 207, 615
FokI GGATG 6 cut(s) 376, 506, 552, 586, 791, 1155
Fsp4HI GCNGC 2 cut(s) 207, 615
FspBI CTAG 1 cut(s) 555
GlaI GCGC 3 cut(s) 205, 210, 925
GluI GCNGC 2 cut(s) 207, 615
GsaI CCCAGC 1 cut(s) 846
HaeIII GGCC 2 cut(s) 639, 837
HapII CCGG 2 cut(s) 83, 1106
HgaI GACGC 1 cut(s) 866
HhaI GCGC 3 cut(s) 206, 211, 926
Hin1I GRCGYC 1 cut(s) 858
Hin6I GCGC 3 cut(s) 204, 209, 924
HinP1I GCGC 3 cut(s) 204, 209, 924
HincII GTYRAC 1 cut(s) 1270
HindII GTYRAC 1 cut(s) 1270
HinfI GANTC 2 cut(s) 548, 933
HpaII CCGG 2 cut(s) 83, 1106
HphI GGTGA 4 cut(s) 38, 678, 1403, 1460
Hpy166II GTNNAC 3 cut(s) 217, 949, 1270
Hpy188I TCNGA 7 cut(s) 190, 363, 794, 1077, 1180, 1359, 1364
Hpy188III TCNNGA 5 cut(s) 461, 874, 980, 1201, 1451
Hpy8I GTNNAC 3 cut(s) 217, 949, 1270
HpyAV CCTTC 5 cut(s) 13, 368, 1034, 1045, 1475
HpyCH4III ACNGT 4 cut(s) 238, 261, 301, 409
HpyCH4IV ACGT 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 3 cut(s) 341, 611, 794
HpyF3I CTNAG 4 cut(s) 321, 502, 531, 1379
HpySE526I ACGT 1 cut(s) 95
Hsp92I GRCGYC 1 cut(s) 858
HspAI GCGC 3 cut(s) 204, 209, 924
Ksp22I TGATCA 1 cut(s) 1197
Kzo9I GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
LmnI GCTCC 3 cut(s) 58, 911, 1222
Lsp1109I GCAGC 2 cut(s) 193, 626
LweI GCATC 3 cut(s) 238, 564, 1444
MaeI CTAG 1 cut(s) 555
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 4 cut(s) 684, 1139, 1257, 1391
MalI GATC 8 cut(s) 285, 360, 500, 743, 828, 1074, 1199, 1361
MboI GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
MboII GAAGA 7 cut(s) 746, 758, 759, 968, 1108, 1290, 1325
MfeI CAATTG 1 cut(s) 1320
MflI RGATCY 2 cut(s) 283, 1072
MhlI GDGCHC 2 cut(s) 636, 881
MmeI TCCRAC 3 cut(s) 275, 471, 1200
MnlI CCTC 6 cut(s) 62, 334, 742, 892, 1080, 1267
Mph1103I ATGCAT 1 cut(s) 444
MseI TTAA 3 cut(s) 414, 671, 863
MslI CAYNNNNRTG 2 cut(s) 942, 1492
MspI CCGG 2 cut(s) 83, 1106
MspR9I CCNGG 3 cut(s) 451, 953, 1107
MteI GCGCNGCGC 1 cut(s) 207
MunI CAATTG 1 cut(s) 1320
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 451, 953
MvnI CGCG 1 cut(s) 1001
MwoI GCNNNNNNNGC 3 cut(s) 341, 611, 794
NciI CCSGG 1 cut(s) 1107
NcoI CCATGG 2 cut(s) 937, 1172
NdeII GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
NmuCI GTSAC 2 cut(s) 684, 1391
NsiI ATGCAT 1 cut(s) 444
NspI RCATGY 3 cut(s) 223, 930, 1491
PaeI GCATGC 1 cut(s) 1491
PagI TCATGA 1 cut(s) 460
PciI ACATGT 1 cut(s) 219
PctI GAATGC 1 cut(s) 337
PfeI GAWTC 2 cut(s) 548, 933
PkrI GCNGC 2 cut(s) 208, 616
PscI ACATGT 1 cut(s) 219
PsiI TTATAA 1 cut(s) 593
Psp6I CCWGG 2 cut(s) 449, 951
PspFI CCCAGC 1 cut(s) 842
PspGI CCWGG 2 cut(s) 449, 951
PspPI GGNCC 2 cut(s) 133, 835
PsuI RGATCY 2 cut(s) 283, 1072
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
RseI CAYNNNNRTG 2 cut(s) 942, 1492
SaqAI TTAA 3 cut(s) 414, 671, 863
SatI GCNGC 2 cut(s) 207, 615
Sau3AI GATC 8 cut(s) 283, 358, 498, 741, 826, 1072, 1197, 1359
Sau96I GGNCC 2 cut(s) 133, 835
ScrFI CCNGG 3 cut(s) 451, 953, 1107
SduI GDGCHC 2 cut(s) 636, 881
SfaNI GCATC 3 cut(s) 238, 564, 1444
SfcI CTRYAG 1 cut(s) 986
SinI GGWCC 1 cut(s) 133
SmiMI CAYNNNNRTG 2 cut(s) 942, 1492
SphI GCATGC 1 cut(s) 1491
SsiI CCGC 4 cut(s) 72, 253, 537, 1001
SspMI CTAG 1 cut(s) 555
StyD4I CCNGG 3 cut(s) 449, 951, 1105
StyI CCWWGG 2 cut(s) 937, 1172
TaaI ACNGT 4 cut(s) 238, 261, 301, 409
TaiI ACGT 1 cut(s) 98
TaqI TCGA 6 cut(s) 67, 243, 744, 770, 873, 1450
TatI WGTACW 1 cut(s) 233
TfiI GAWTC 2 cut(s) 548, 933
Tru1I TTAA 3 cut(s) 414, 671, 863
Tru9I TTAA 3 cut(s) 414, 671, 863
TscAI CASTG 3 cut(s) 306, 682, 1348
TseFI GTSAC 2 cut(s) 684, 1391
TseI GCWGC 2 cut(s) 206, 614
Tsp45I GTSAC 2 cut(s) 684, 1391
TspDTI ATGAA 4 cut(s) 146, 387, 449, 795
TspRI CASTG 3 cut(s) 306, 682, 1348
VpaK11BI GGWCC 1 cut(s) 133
XapI RAATTY 4 cut(s) 561, 970, 1101, 1249
XceI RCATGY 3 cut(s) 223, 930, 1491
XmiI GTMKAC 1 cut(s) 948
XspI CTAG 1 cut(s) 555
Zsp2I ATGCAT 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.