MD12G1028100.v1.1

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0015656
Physical Location & Seq
Forward (+)
3137748 .. 3139601
1854 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1028100.v1.1.491

Sequence Viewer

Length: 1854 bp
ATGCTCAAACTGAAAAACCAGACCTTCCTTGACCCCAACCATGGCATCCTCAGACTCCCATTGTTCTCCACAGCTGCTGCTGTTACAAACACCACGGCTGTCCCCGCCCAACCTCATTTTCCCCGAACTCTGGACCCCAAATTCTATGTCAACGTCCTGCTCAGCTCCAGAAACATCTTTCACATCCGACAAGTGCATGCCCAAGTGACTGCCAATGGAATGCTCCAAAATCTCACCGTTGCAAACAAGCTGCTTTATATGTACACCCAGCAGAGGGTGCTGGGTGAAGCTTATGCTCTGTTTGGTGGGATGGAGGAGAAAGATGCAGTTTCTTGGAGTGTAATGGTTGGTGGGTTTGTGAAGGCTGGTGATTATACCAATGGTTTTGCAACATTTAGGGAGCTTATTCGAGGCGGTGTTTCGCCGGATAACTATACATTGCCCTTTGTGATTAGGGTTTGTAGGGATTTGATGGACCTGCAAATGGGCAGGTTGGTTCATGGCATTGTGTTGAAGCATGGGTTGGTTTCGGATAATTTTGTTTGCGCTGCGCTCGTGGACATGTATGCGAAATGTAGGGTTATCGATGATGCCCGCCAACTGTTTGATAATATGCAGAGCAGGGATCTTGTGAGTTGGACAGTGATGATTGGTGCATGTGCTGAGTGCAGGAATGCTGATGAGGCTTTGGTTTTGTTTGATCGGATGGTTGATGAAGGTGTTTTACCGGATAAGGTTGCTATGGCTACTGTTGTTAATGCTTGTGCAAAATTGGGGGCTATGCATAAAGCCAGGCTTGTTGATGATTATATATGTAGGAATAAGTTTTCGTTGGATGTGATCTTAGGAACGGCGATGATTGATATGTATGCTAAGTGCGGATGTGTTGATTCTGCTAGGGAAATTTTTGATAGGATGCACGTAAAGAATGTTATAACATGGAGTGCTATGATTGCAGCGTATGGTTATCATGGGCACGGCCGAAAAGCTATTGATATTTTTGAAATGATGTTAAGCAGTGGAGTGTCACCAAATGCAATAACTTTTATTTCACTATTATATGCTTGTAGTCATTCAGGCTTGATCGAAGAGGGTCTTCGGTTTTTCTCTTCGATGTGGGATGAATATGCTGTCAGAGCAGATGTCAAACATTATACTTGTATGGTTGATCTCTTGGGCCGTGCTGGGAAACTTGATGAGGCCTTAAAATTAGTCGAGAGCACGGCAGTTGAGAAAGATGAGGGGTTATGGGGAGCTTTTCTTGGCGCATGTAGAATCCATGGGAATGTAGACCTGGCAAAAAAGGTAGTGAATTCTCTTCTTGAACTACAGCCAGAAAACGCAGGGCATTATGTATTGCTTTCAAATATATATGCACGAGAAGGTAGGTGGAAGGAAATGTCAAAAATGAGAGATCTGATGACCCAGAGGAAACTGAAGAAAATTCCGGGTTTGACTTGGATTGAAGTGGATAACAAAATTTACCAATTTAGCGTGGGCGATAGGTCTCATCCATGGTCAGAAAAGATTTATGCGATGATCAAGAGTTTGAATGAGAAGTTGGAGCTGGCTGGTTATGTGCCTGATACAAATTTTGTGTTACATGATGTTGACGAGGAAGTGAAGTTGGGTATGTTGTCTTCACATAGTGAGAAGTTGGCAATTGCATTTGGTCTCCTTGCCACTGCTGATGGAACTCCGATCAGAATTACAAAAAATCTTAGGGTTTGTGGTGACTGCCACTCGTTTATCAAGTTTGTATCGGCTATAACACAAAGGGTTATCATTGTTCGAGATGCAAATCGATTTCACCACTTCAAAGAAGGGGCATGCTCATGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

618

Amino Acids

69.08

Weight (kDa)

7.56

Isoelectric Point (pI)

34.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 108 - 154 8.2e-06 PPR repeat family
PPR_2 PF13041 209 - 257 1e-08 PPR repeat family
PPR PF01535 211 - 241 9.8e-07 PPR repeat
PPR_2 PF13041 309 - 357 4.4e-11 PPR repeat family
PPR PF01535 312 - 342 2.4e-06 PPR repeat
E_motif PF20431 427 - 489 3.7e-21 E motif
DYW_deaminase PF14432 525 - 617 7.9e-45 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19240 FvH4_6g19240 FvH4_6g19240
malus_domestica MD12G1028100.v1.1
prunus_persica Prupe.7G103500_v2.0.a1
pyrus_communis pycom12g02690
rosa_chinensis RchiOBHm_Chr3g0474341
rosa_laevigata RLG00000023931
rosa_multiflora Rmu_sc0000098.1_g000006 Rmu_sc0004507.1_g000010 Rmu_sc0031141.1_g000001
rosa_roxburghii Rroxscaffold_6G00407330
rosa_rugosa Rorug03G0140200
rosa_samantha Rh3BG220200 Rh3DG215900
rosa_wichuraiana Rw3G017420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 935
Acc36I ACCTGC 2 cut(s) 480, 486
AccI GTMKAC 1 cut(s) 1290
AciI CCGC 4 cut(s) 105, 414, 595, 879
AclWI GGATC 1 cut(s) 633
AcoI YGGCCR 1 cut(s) 979
AcsI RAATTY 6 cut(s) 140, 903, 1312, 1443, 1479, 1591
AcuI CTGAAG 1 cut(s) 1457
AdeI CACNNNGTG 1 cut(s) 1649
AfaI GTAC 1 cut(s) 263
AfiI CCNNNNNNNGG 5 cut(s) 41, 130, 273, 274, 484
AflIII ACRYGT 1 cut(s) 561
AgsI TTSAA 7 cut(s) 514, 1004, 1325, 1365, 1466, 1552, 1819
AjnI CCWGG 2 cut(s) 791, 1293
AjuI GAANNNNNNNTTGG 6 cut(s) 102, 134, 506, 538, 1544, 1576
AluBI AGCT 8 cut(s) 74, 165, 250, 290, 403, 989, 1256, 1567
AluI AGCT 8 cut(s) 74, 165, 250, 290, 403, 989, 1256, 1567
Alw21I GWGCWC 1 cut(s) 1223
Alw26I GTCTC 2 cut(s) 1512, 1679
AlwI GGATC 1 cut(s) 633
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 3 cut(s) 979, 1177, 1200
ApeKI GCWGC 5 cut(s) 74, 77, 250, 548, 956
ApoI RAATTY 6 cut(s) 140, 903, 1312, 1443, 1479, 1591
ArsI GACNNNNNNTTYG 2 cut(s) 132, 164
AspLEI GCGC 3 cut(s) 548, 553, 1268
AspS9I GGNCC 3 cut(s) 133, 475, 1177
AsuC2I CCSGG 1 cut(s) 1449
AsuHPI GGTGA 6 cut(s) 226, 296, 380, 1020, 1745, 1802
AvaII GGWCC 2 cut(s) 133, 475
BaeGI GKGCMC 1 cut(s) 978
BarI GAAGNNNNNNTAC 4 cut(s) 708, 740, 1624, 1656
BauI CACGAG 2 cut(s) 554, 1377
BbsI GAAGAC 2 cut(s) 1088, 1632
Bbv12I GWGCWC 1 cut(s) 1223
BbvI GCAGC 5 cut(s) 61, 64, 237, 535, 968
BccI CCATC 4 cut(s) 304, 466, 700, 1685
BceAI ACGGC 5 cut(s) 111, 867, 994, 1164, 1239
BciT130I CCWGG 2 cut(s) 793, 1295
BclI TGATCA 1 cut(s) 1539
BcnI CCSGG 1 cut(s) 1449
BcoDI GTCTC 2 cut(s) 1512, 1679
BfaI CTAG 1 cut(s) 897
BfmI CTRYAG 1 cut(s) 1328
BfuAI ACCTGC 2 cut(s) 480, 486
BglII AGATCT 1 cut(s) 1414
BisI GCNGC 5 cut(s) 75, 78, 251, 549, 957
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 5 cut(s) 76, 79, 252, 550, 958
Bme1390I CCNGG 3 cut(s) 793, 1295, 1449
Bme18I GGWCC 2 cut(s) 133, 475
BmgT120I GGNCC 3 cut(s) 133, 475, 1177
BmiI GGNNCC 1 cut(s) 135
BmrFI CCNGG 3 cut(s) 793, 1295, 1449
BmsI GCATC 5 cut(s) 54, 313, 580, 906, 1786
BpiI GAAGAC 2 cut(s) 1088, 1632
BpmI CTGGAG 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 161
BpuMI CCSGG 1 cut(s) 1449
Bsa29I ATCGAT 2 cut(s) 585, 1804
BsaAI YACGTR 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 1800
BsaI GGTCTC 2 cut(s) 1512, 1679
BsaJI CCNNGG 4 cut(s) 40, 93, 1279, 1514
BsaWI WCCGGW 1 cut(s) 727
Bsc4I CCNNNNNNNGG 5 cut(s) 41, 130, 273, 274, 484
Bse3DI GCAATG 1 cut(s) 437
Bse8I GATNNNNATC 1 cut(s) 1800
BseBI CCWGG 2 cut(s) 793, 1295
BseCI ATCGAT 2 cut(s) 585, 1804
BseDI CCNNGG 4 cut(s) 40, 93, 1279, 1514
BseGI GGATG 9 cut(s) 45, 183, 315, 711, 841, 887, 921, 1126, 1510
BseJI GATNNNNATC 1 cut(s) 1800
BseLI CCNNNNNNNGG 5 cut(s) 41, 130, 273, 274, 484
BseMI GCAATG 1 cut(s) 437
BseMII CTCAG 3 cut(s) 64, 175, 654
BseRI GAGGAG 1 cut(s) 329
BseSI GKGCMC 1 cut(s) 978
BseX3I CGGCCG 1 cut(s) 979
BseXI GCAGC 5 cut(s) 61, 64, 237, 535, 968
BseYI CCCAGC 3 cut(s) 267, 280, 1184
BsgI GTGCAG 1 cut(s) 688
Bsh1285I CGRYCG 1 cut(s) 982
BshFI GGCC 3 cut(s) 981, 1179, 1202
BshVI ATCGAT 2 cut(s) 585, 1804
BsiEI CGRYCG 1 cut(s) 982
BsiHKAI GWGCWC 1 cut(s) 1223
BsiSI CCGG 3 cut(s) 425, 728, 1448
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 5 cut(s) 41, 130, 273, 274, 484
BsmAI GTCTC 2 cut(s) 1512, 1679
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 2 cut(s) 225, 679
BsnI GGCC 3 cut(s) 981, 1179, 1202
Bso31I GGTCTC 2 cut(s) 1512, 1679
Bsp1286I GDGCHC 2 cut(s) 978, 1223
Bsp1407I TGTACA 1 cut(s) 261
Bsp143I GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
Bsp1720I GCTNAGC 1 cut(s) 161
Bsp19I CCATGG 3 cut(s) 40, 1279, 1514
BspACI CCGC 4 cut(s) 105, 414, 595, 879
BspANI GGCC 3 cut(s) 981, 1179, 1202
BspCNI CTCAG 3 cut(s) 63, 174, 655
BspDI ATCGAT 2 cut(s) 585, 1804
BspLI GGNNCC 1 cut(s) 135
BspMI ACCTGC 2 cut(s) 480, 486
BspPI GGATC 1 cut(s) 633
BspTNI GGTCTC 2 cut(s) 1512, 1679
BsrDI GCAATG 1 cut(s) 437
BsrGI TGTACA 1 cut(s) 261
BssECI CCNNGG 4 cut(s) 40, 93, 1279, 1514
BssMI GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
BssSI CACGAG 2 cut(s) 554, 1377
BssT1I CCWWGG 3 cut(s) 40, 1279, 1514
Bst2BI CACGAG 2 cut(s) 554, 1377
Bst2UI CCWGG 2 cut(s) 793, 1295
Bst4CI ACNGT 4 cut(s) 238, 603, 643, 751
Bst6I CTCTTC 3 cut(s) 1083, 1114, 1323
BstAPI GCANNNNNTGC 1 cut(s) 277
BstAUI TGTACA 1 cut(s) 261
BstBAI YACGTR 1 cut(s) 922
BstC8I GCNNGC 4 cut(s) 198, 595, 1569, 1831
BstDEI CTNAG 6 cut(s) 50, 161, 663, 844, 873, 1721
BstDSI CCRYGG 4 cut(s) 40, 93, 1279, 1514
BstF5I GGATG 9 cut(s) 45, 183, 315, 711, 841, 887, 921, 1126, 1510
BstHHI GCGC 3 cut(s) 548, 553, 1268
BstKTI GATC 8 cut(s) 628, 703, 843, 1086, 1171, 1417, 1542, 1704
BstMAI GTCTC 2 cut(s) 1512, 1679
BstMBI GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
BstMCI CGRYCG 1 cut(s) 982
BstMWI GCNNNNNNNGC 5 cut(s) 104, 277, 683, 953, 1136
BstNI CCWGG 2 cut(s) 793, 1295
BstNSI RCATGY 5 cut(s) 200, 565, 660, 1272, 1833
BstSCI CCNGG 3 cut(s) 791, 1293, 1447
BstSFI CTRYAG 1 cut(s) 1328
BstSLI GKGCMC 1 cut(s) 978
BstV1I GCAGC 5 cut(s) 61, 64, 237, 535, 968
BstV2I GAAGAC 2 cut(s) 1088, 1632
BstX2I RGATCY 2 cut(s) 625, 1414
BstYI RGATCY 2 cut(s) 625, 1414
BstZI CGGCCG 1 cut(s) 979
Bsu15I ATCGAT 2 cut(s) 585, 1804
BsuRI GGCC 3 cut(s) 981, 1179, 1202
BsuTUI ATCGAT 2 cut(s) 585, 1804
BtgI CCRYGG 4 cut(s) 40, 93, 1279, 1514
BtgZI GCGATG 2 cut(s) 869, 1550
BtsCI GGATG 9 cut(s) 45, 183, 315, 711, 841, 887, 921, 1126, 1510
BtsI GCAGTG 2 cut(s) 1024, 1683
BtsIMutI CAGTG 3 cut(s) 648, 1024, 1683
BveI ACCTGC 2 cut(s) 480, 486
Cac8I GCNNGC 4 cut(s) 198, 595, 1569, 1831
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 3 cut(s) 548, 553, 1268
Cfr13I GGNCC 3 cut(s) 133, 475, 1177
ClaI ATCGAT 2 cut(s) 585, 1804
Csp6I GTAC 1 cut(s) 262
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 6 cut(s) 50, 161, 663, 844, 873, 1721
DpnI GATC 8 cut(s) 627, 702, 842, 1085, 1170, 1416, 1541, 1703
DpnII GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
DraIII CACNNNGTG 1 cut(s) 1649
EaeI YGGCCR 1 cut(s) 979
EagI CGGCCG 1 cut(s) 979
Eam1104I CTCTTC 3 cut(s) 1083, 1114, 1323
EarI CTCTTC 3 cut(s) 1083, 1114, 1323
EclXI CGGCCG 1 cut(s) 979
Eco130I CCWWGG 3 cut(s) 40, 1279, 1514
Eco147I AGGCCT 1 cut(s) 1202
Eco31I GGTCTC 2 cut(s) 1512, 1679
Eco47I GGWCC 2 cut(s) 133, 475
Eco52I CGGCCG 1 cut(s) 979
Eco57I CTGAAG 1 cut(s) 1457
EcoRI GAATTC 1 cut(s) 1312
EcoRII CCWGG 2 cut(s) 791, 1293
EcoT14I CCWWGG 3 cut(s) 40, 1279, 1514
EcoT22I ATGCAT 1 cut(s) 786
ErhI CCWWGG 3 cut(s) 40, 1279, 1514
FalI AAGNNNNNCTT 4 cut(s) 780, 812, 1080, 1112
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 2 cut(s) 112, 602
FbaI TGATCA 1 cut(s) 1539
FblI GTMKAC 1 cut(s) 1290
Fnu4HI GCNGC 5 cut(s) 75, 78, 251, 549, 957
FokI GGATG 9 cut(s) 32, 170, 322, 718, 848, 894, 928, 1133, 1497
Fsp4HI GCNGC 5 cut(s) 75, 78, 251, 549, 957
FspBI CTAG 1 cut(s) 897
GlaI GCGC 3 cut(s) 547, 552, 1267
GluI GCNGC 5 cut(s) 75, 78, 251, 549, 957
GsaI CCCAGC 3 cut(s) 271, 284, 1188
GsuI CTGGAG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 981, 1179, 1202
HapII CCGG 3 cut(s) 425, 728, 1448
HhaI GCGC 3 cut(s) 548, 553, 1268
Hin6I GCGC 3 cut(s) 546, 551, 1266
HinP1I GCGC 3 cut(s) 546, 551, 1266
HincII GTYRAC 2 cut(s) 151, 1612
HindII GTYRAC 2 cut(s) 151, 1612
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 3 cut(s) 54, 890, 1275
HpaII CCGG 3 cut(s) 425, 728, 1448
HphI GGTGA 6 cut(s) 226, 296, 380, 1020, 1745, 1802
Hpy166II GTNNAC 5 cut(s) 151, 264, 559, 1291, 1612
Hpy188I TCNGA 9 cut(s) 53, 188, 532, 705, 1136, 1419, 1522, 1701, 1706
Hpy188III TCNNGA 6 cut(s) 131, 168, 1216, 1322, 1543, 1793
Hpy8I GTNNAC 5 cut(s) 151, 264, 559, 1291, 1612
HpyAV CCTTC 6 cut(s) 34, 355, 710, 1376, 1387, 1817
HpyCH4III ACNGT 4 cut(s) 238, 603, 643, 751
HpyCH4IV ACGT 2 cut(s) 153, 921
HpyF10VI GCNNNNNNNGC 5 cut(s) 104, 277, 683, 953, 1136
HpyF3I CTNAG 6 cut(s) 50, 161, 663, 844, 873, 1721
HpySE526I ACGT 2 cut(s) 153, 921
HspAI GCGC 3 cut(s) 546, 551, 1266
Ksp22I TGATCA 1 cut(s) 1539
Kzo9I GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
LmnI GCTCC 5 cut(s) 170, 228, 400, 1253, 1564
Lsp1109I GCAGC 5 cut(s) 61, 64, 237, 535, 968
LweI GCATC 5 cut(s) 54, 313, 580, 906, 1786
MaeI CTAG 1 cut(s) 897
MaeII ACGT 2 cut(s) 153, 921
MaeIII GTNAC 5 cut(s) 82, 205, 1026, 1599, 1733
MalI GATC 8 cut(s) 627, 702, 842, 1085, 1170, 1416, 1541, 1703
MboI GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
MboII GAAGA 6 cut(s) 1088, 1100, 1101, 1310, 1450, 1632
MfeI CAATTG 1 cut(s) 1662
MflI RGATCY 2 cut(s) 625, 1414
MhlI GDGCHC 2 cut(s) 978, 1223
MlyI GAGTC 1 cut(s) 48
MmeI TCCRAC 4 cut(s) 211, 617, 813, 1542
Mph1103I ATGCAT 1 cut(s) 786
MseI TTAA 3 cut(s) 756, 1013, 1205
MslI CAYNNNNRTG 2 cut(s) 1284, 1834
MspA1I CMGCKG 1 cut(s) 74
MspI CCGG 3 cut(s) 425, 728, 1448
MspR9I CCNGG 3 cut(s) 793, 1295, 1449
MteI GCGCNGCGC 1 cut(s) 549
MunI CAATTG 1 cut(s) 1662
Mva1269I GAATGC 2 cut(s) 225, 679
MvaI CCWGG 2 cut(s) 793, 1295
MwoI GCNNNNNNNGC 5 cut(s) 104, 277, 683, 953, 1136
NciI CCSGG 1 cut(s) 1449
NcoI CCATGG 3 cut(s) 40, 1279, 1514
NdeII GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
NlaIV GGNNCC 1 cut(s) 135
NmuCI GTSAC 3 cut(s) 205, 1026, 1733
NsiI ATGCAT 1 cut(s) 786
NspI RCATGY 5 cut(s) 200, 565, 660, 1272, 1833
PaeI GCATGC 2 cut(s) 200, 1833
PceI AGGCCT 1 cut(s) 1202
PciI ACATGT 1 cut(s) 561
PctI GAATGC 2 cut(s) 225, 679
PfeI GAWTC 2 cut(s) 890, 1275
PkrI GCNGC 5 cut(s) 76, 79, 252, 550, 958
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 922
PscI ACATGT 1 cut(s) 561
PsiI TTATAA 1 cut(s) 935
Psp6I CCWGG 2 cut(s) 791, 1293
PspFI CCCAGC 3 cut(s) 267, 280, 1184
PspGI CCWGG 2 cut(s) 791, 1293
PspN4I GGNNCC 1 cut(s) 135
PspPI GGNCC 3 cut(s) 133, 475, 1177
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 625, 1414
PvuII CAGCTG 1 cut(s) 74
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
RseI CAYNNNNRTG 2 cut(s) 1284, 1834
SaqAI TTAA 3 cut(s) 756, 1013, 1205
SatI GCNGC 5 cut(s) 75, 78, 251, 549, 957
Sau3AI GATC 8 cut(s) 625, 700, 840, 1083, 1168, 1414, 1539, 1701
Sau96I GGNCC 3 cut(s) 133, 475, 1177
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 3 cut(s) 793, 1295, 1449
SduI GDGCHC 2 cut(s) 978, 1223
SfaNI GCATC 5 cut(s) 54, 313, 580, 906, 1786
SfcI CTRYAG 1 cut(s) 1328
SinI GGWCC 2 cut(s) 133, 475
SmiMI CAYNNNNRTG 2 cut(s) 1284, 1834
SphI GCATGC 2 cut(s) 200, 1833
SseBI AGGCCT 1 cut(s) 1202
SsiI CCGC 4 cut(s) 105, 414, 595, 879
SspMI CTAG 1 cut(s) 897
StuI AGGCCT 1 cut(s) 1202
StyD4I CCNGG 3 cut(s) 791, 1293, 1447
StyI CCWWGG 3 cut(s) 40, 1279, 1514
TaaI ACNGT 4 cut(s) 238, 603, 643, 751
TaiI ACGT 2 cut(s) 156, 924
TaqI TCGA 7 cut(s) 409, 585, 1086, 1112, 1215, 1792, 1804
TatI WGTACW 1 cut(s) 261
TfiI GAWTC 2 cut(s) 890, 1275
Tru1I TTAA 3 cut(s) 756, 1013, 1205
Tru9I TTAA 3 cut(s) 756, 1013, 1205
TscAI CASTG 3 cut(s) 648, 1024, 1690
TseFI GTSAC 3 cut(s) 205, 1026, 1733
TseI GCWGC 5 cut(s) 74, 77, 250, 548, 956
Tsp45I GTSAC 3 cut(s) 205, 1026, 1733
TspDTI ATGAA 3 cut(s) 488, 729, 1137
TspRI CASTG 3 cut(s) 648, 1024, 1690
VpaK11BI GGWCC 2 cut(s) 133, 475
XapI RAATTY 6 cut(s) 140, 903, 1312, 1443, 1479, 1591
XceI RCATGY 5 cut(s) 200, 565, 660, 1272, 1833
XmiI GTMKAC 1 cut(s) 1290
XspI CTAG 1 cut(s) 897
Zsp2I ATGCAT 1 cut(s) 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.