Rw3G017420

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0015656
Physical Location & Seq
Forward (+)
18817300 .. 18819534
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017420.1

Sequence Viewer

Length: 1863 bp
ATGCTCAAATTGAAAAGCCAGGCCTTCCTTATTCGAAACCATGGCATGCCTAGATTCCCCAAGTTTGCTTCAGCAGCTGCCTTAGCTGATACCACAATTACCCAGACCCTTATACAGGAAGTGGCACAACCTCGAATTCAACCCCCCGAACTGTTCATCACTGCCCTGCAGAGCTCTAGAAACATCTTCCACATTAGACAAGTCCATGCCCAAGTTGCTGTCAATGGATTCCTCCAAAACCTCACTGTTGCAAACAAGCTCCTCTACATGTATGCACAGCATAAGGTGCTGGGTGACGCTTATGCTCTGTTTAGTGGAATGGTGGAAAAGAATGCAGTTTCTTGGAGTGTAATGGTTGGTGGGTTTGTGAAGGGTGGTGATTTTGCTAATGGTTTTAGAACATTTAGGGAGCTCATTCGATGTGGGATGCCGCCGGATAATTACACATTGCCTTTTGTGATAAGGGCTTGTAGGGATTTGATGGACCTGAAAATTGGCAGGTTGGTTCATGACATTGTTCTGAAACATGGGATGCTTTCGGATAATTTTGTATGTGCTGCTCTGGTGGACATGTATGCGAAATGTAGGGTTATAGATGATGCCCGCCAACTGTTTGATAATATGCCTAACAGGGATATTGTAACATGGACAGTGATGATTGGTGGGTTTGCTGAGTGCAGGAATGCGAGTGAGTCTTTGGTTCTGTTTGATAGGATGATAGATGAAGGTGTTGTTCCAGATACGGTTACTATGGTGACCGTTGTTAATGCTTGTGCAAAGTTTGGGGCTATGCATAAGGCCAGACTTGTTCATGATTATATACGTAGGAATAAGTTTTACTTGGATGTGATCTTGGGGACGGCGATGATTGATATGTATGCTAAGTGTGGGTGTGTTGATTCCGCATGGGAAATTTTCGACAGGATGCAAGTGAGGAATGTTAGAACATGGAGTGCCCTGATTGCGGCTTATGGTTATCACGGGCGCGGCAACGAAGCTCTTGAGATATTCGAGATGATGTTGAGCAATGGAGTGTTACCAAATGCAGTTACATTTATTTCACTATTATATGCTTGTAGTCATGCTGGCTTGACTGAAGAGGGTCTGCGGTTTTTCTCATTGATGTCGGATGAATATGCTGTCAGGGCAGATGTTAAACATTATACTTGTATGGTGGATCTTCTAGGTCGTGCTGGGAAACTTGATGAGGCCTTGAAATTGGCTGAGAGTATGGCAGTTGAGAAAGATGAGGGGTTATGGAGTGCTTTGCTTGCGGCATGTAGAGTCCATGGGAAACTAGACCTAGCAGAAAAGGCAGCTAGTTCACTGCTTGAACTACAGCCTGAAAACCCAGGGCATTACGTATTGCTTTCAAATATTTATGCAAGAGCAGGGAGGTGGAAAGAAGTGGCGAAGATGAGAAATCTGATGACCCAGAGGAGACTAAAGAAAATTCCTGGTTATACTTGGATTGAGATAGATGACAAAAACTACCAATTTGGTGTTGCTGATAGAACTCATCCACAATCAGAAAACATTTATGCTATGCTGAAGAGTTTGAGTCACAAACTGGAGTTGGCTGGTTATGTCCCTGATACGAATTTTGTGTTGCATGATGTTGATGAGGAAGTTAAAGTGGATATGTTGTACACCCATAGTGAGAAGTTGGCAATTGCATTTGGCCTTATCGCCACGTCTGATGGAACTCCTATTAGAATTACAAAGAATCTTAGGGTTTGTGGTGACTGCCACACATTTAGCAAGTTTGTATCAGCTATTACAAATAGGGAGATTATTGTCCGTGATGCAAACCGGTTTCACCTCTTCAGGCAAGGGACCTGCTCATGTGGAGATTATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

620

Amino Acids

69.82

Weight (kDa)

8.08

Isoelectric Point (pI)

38.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 211 - 260 3.2e-09 PPR repeat family
PPR_2 PF13041 313 - 360 2.3e-10 PPR repeat family
PPR PF01535 316 - 345 8.5e-07 PPR repeat
E_motif PF20431 430 - 492 1.2e-23 E motif
DYW_deaminase PF14432 528 - 620 1.5e-44 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015656)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g19240 FvH4_6g19240 FvH4_6g19240
malus_domestica MD12G1028100.v1.1
prunus_persica Prupe.7G103500_v2.0.a1
pyrus_communis pycom12g02690
rosa_chinensis RchiOBHm_Chr3g0474341
rosa_laevigata RLG00000023931
rosa_multiflora Rmu_sc0000098.1_g000006 Rmu_sc0004507.1_g000010 Rmu_sc0031141.1_g000001
rosa_roxburghii Rroxscaffold_6G00407330
rosa_rugosa Rorug03G0140200
rosa_samantha Rh3BG220200 Rh3DG215900
rosa_wichuraiana Rw3G017420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 489, 1847
AccII CGCG 1 cut(s) 987
AciI CCGC 7 cut(s) 431, 604, 903, 965, 987, 1108, 1274
AclWI GGATC 1 cut(s) 1185
AcsI RAATTY 4 cut(s) 135, 912, 1452, 1600
AcuI CTGAAG 4 cut(s) 54, 1116, 1571, 1810
AfaI GTAC 1 cut(s) 1649
AfiI CCNNNNNNNGG 2 cut(s) 115, 964
AflIII ACRYGT 2 cut(s) 267, 570
AgeI ACCGGT 1 cut(s) 1812
AgsI TTSAA 5 cut(s) 13, 140, 1216, 1334, 1374
AjiI CACGTC 1 cut(s) 1695
AjnI CCWGG 3 cut(s) 18, 1351, 1456
AluBI AGCT 8 cut(s) 77, 86, 174, 259, 412, 998, 1319, 1775
AluI AGCT 8 cut(s) 77, 86, 174, 259, 412, 998, 1319, 1775
Alw21I GWGCWC 2 cut(s) 176, 414
Alw26I GTCTC 1 cut(s) 1435
AlwI GGATC 1 cut(s) 1185
AlwNI CAGNNNCTG 1 cut(s) 77
AoxI GGCC 4 cut(s) 21, 798, 1209, 1681
ApeKI GCWGC 4 cut(s) 74, 77, 557, 1316
ApoI RAATTY 4 cut(s) 135, 912, 1452, 1600
AsiGI ACCGGT 1 cut(s) 1812
AspLEI GCGC 1 cut(s) 987
AspS9I GGNCC 2 cut(s) 484, 1836
AsuHPI GGTGA 5 cut(s) 305, 389, 766, 1754, 1811
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 484, 1836
BaeGI GKGCMC 1 cut(s) 958
BanII GRGCYC 2 cut(s) 176, 414
Bbv12I GWGCWC 2 cut(s) 176, 414
BbvI GCAGC 4 cut(s) 64, 86, 544, 1328
BccI CCATC 2 cut(s) 475, 1694
BceAI ACGGC 1 cut(s) 876
BciT130I CCWGG 3 cut(s) 20, 1353, 1458
BcoDI GTCTC 1 cut(s) 1435
BfaI CTAG 6 cut(s) 51, 177, 1184, 1298, 1304, 1320
BfmI CTRYAG 2 cut(s) 167, 1337
BfuAI ACCTGC 2 cut(s) 489, 1847
BisI GCNGC 8 cut(s) 75, 78, 431, 558, 966, 988, 1275, 1317
BlsI GCNGC 8 cut(s) 76, 79, 432, 559, 967, 989, 1276, 1318
Bme1390I CCNGG 3 cut(s) 20, 1353, 1458
Bme18I GGWCC 2 cut(s) 484, 1836
BmgBI CACGTC 1 cut(s) 1695
BmgT120I GGNCC 2 cut(s) 484, 1836
BmiI GGNNCC 1 cut(s) 1837
BmrFI CCNGG 3 cut(s) 20, 1353, 1458
BmsI GCATC 5 cut(s) 417, 522, 589, 915, 1795
BpmI CTGGAG 1 cut(s) 1592
Bpu10I CCTNAGC 1 cut(s) 82
Bpu14I TTCGAA 1 cut(s) 34
BpuEI CTTGAG 1 cut(s) 1022
BsaAI YACGTR 2 cut(s) 824, 1363
BsaJI CCNNGG 4 cut(s) 40, 1288, 1351, 1352
BsaWI WCCGGW 1 cut(s) 1812
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 964
Bse118I RCCGGY 1 cut(s) 1812
Bse1I ACTGG 1 cut(s) 1575
Bse3DI GCAATG 2 cut(s) 446, 1033
BseBI CCWGG 3 cut(s) 20, 1353, 1458
BseDI CCNNGG 4 cut(s) 40, 1288, 1351, 1352
BseGI GGATG 7 cut(s) 432, 537, 720, 850, 930, 1135, 1519
BseLI CCNNNNNNNGG 2 cut(s) 115, 964
BseMI GCAATG 2 cut(s) 446, 1033
BseMII CTCAG 2 cut(s) 663, 1215
BseNI ACTGG 1 cut(s) 1575
BseRI GAGGAG 2 cut(s) 251, 1453
BseSI GKGCMC 1 cut(s) 958
BseXI GCAGC 4 cut(s) 64, 86, 544, 1328
BseYI CCCAGC 2 cut(s) 289, 1193
BsgI GTGCAG 1 cut(s) 697
Bsh1236I CGCG 1 cut(s) 987
BshFI GGCC 4 cut(s) 23, 800, 1211, 1683
BshTI ACCGGT 1 cut(s) 1812
BsiHKAI GWGCWC 2 cut(s) 176, 414
BsiSI CCGG 2 cut(s) 434, 1813
BslFI GGGAC 3 cut(s) 871, 1574, 1849
BslI CCNNNNNNNGG 2 cut(s) 115, 964
BsmAI GTCTC 1 cut(s) 1435
BsmFI GGGAC 3 cut(s) 871, 1574, 1849
BsmI GAATGC 2 cut(s) 337, 688
BsnI GGCC 4 cut(s) 23, 800, 1211, 1683
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 3 cut(s) 176, 414, 958
Bsp1407I TGTACA 1 cut(s) 1647
Bsp143I GATC 2 cut(s) 849, 1177
Bsp19I CCATGG 2 cut(s) 40, 1288
BspACI CCGC 7 cut(s) 431, 604, 903, 965, 987, 1108, 1274
BspANI GGCC 4 cut(s) 23, 800, 1211, 1683
BspCNI CTCAG 2 cut(s) 664, 1216
BspFNI CGCG 1 cut(s) 987
BspHI TCATGA 2 cut(s) 508, 811
BspLI GGNNCC 1 cut(s) 1837
BspMAI CTGCAG 1 cut(s) 171
BspMI ACCTGC 2 cut(s) 489, 1847
BspPI GGATC 1 cut(s) 1185
BspT104I TTCGAA 1 cut(s) 34
BsrDI GCAATG 2 cut(s) 446, 1033
BsrFI RCCGGY 1 cut(s) 1812
BsrGI TGTACA 1 cut(s) 1647
BsrI ACTGG 1 cut(s) 1575
BssAI RCCGGY 1 cut(s) 1812
BssECI CCNNGG 4 cut(s) 40, 1288, 1351, 1352
BssMI GATC 2 cut(s) 849, 1177
BssT1I CCWWGG 2 cut(s) 40, 1288
Bst2UI CCWGG 3 cut(s) 20, 1353, 1458
Bst4CI ACNGT 6 cut(s) 153, 247, 612, 652, 745, 760
Bst6I CTCTTC 3 cut(s) 1092, 1547, 1829
BstAPI GCANNNNNTGC 1 cut(s) 286
BstAUI TGTACA 1 cut(s) 1647
BstBAI YACGTR 2 cut(s) 824, 1363
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 4 cut(s) 47, 604, 1087, 1272
BstDEI CTNAG 5 cut(s) 82, 672, 882, 1224, 1730
BstDSI CCRYGG 2 cut(s) 40, 1288
BstEII GGTNACC 1 cut(s) 754
BstENI CCTNNNNNAGG 1 cut(s) 113
BstF5I GGATG 7 cut(s) 432, 537, 720, 850, 930, 1135, 1519
BstFNI CGCG 1 cut(s) 987
BstHHI GCGC 1 cut(s) 987
BstKTI GATC 2 cut(s) 852, 1180
BstMAI GTCTC 1 cut(s) 1435
BstMBI GATC 2 cut(s) 849, 1177
BstMWI GCNNNNNNNGC 8 cut(s) 74, 83, 215, 286, 962, 1145, 1271, 1313
BstNI CCWGG 3 cut(s) 20, 1353, 1458
BstNSI RCATGY 4 cut(s) 49, 271, 574, 1281
BstPI GGTNACC 1 cut(s) 754
BstSCI CCNGG 3 cut(s) 18, 1351, 1456
BstSFI CTRYAG 2 cut(s) 167, 1337
BstSLI GKGCMC 1 cut(s) 958
BstSNI TACGTA 2 cut(s) 824, 1363
BstUI CGCG 1 cut(s) 987
BstV1I GCAGC 4 cut(s) 64, 86, 544, 1328
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BsuRI GGCC 4 cut(s) 23, 800, 1211, 1683
BtgI CCRYGG 2 cut(s) 40, 1288
BtgZI GCGATG 1 cut(s) 878
BtrI CACGTC 1 cut(s) 1695
BtsCI GGATG 7 cut(s) 432, 537, 720, 850, 930, 1135, 1519
BtsI GCAGTG 2 cut(s) 159, 1325
BtsIMutI CAGTG 4 cut(s) 159, 243, 657, 1325
BveI ACCTGC 2 cut(s) 489, 1847
Cac8I GCNNGC 4 cut(s) 47, 604, 1087, 1272
CaiI CAGNNNCTG 1 cut(s) 77
CciI TCATGA 2 cut(s) 508, 811
CfoI GCGC 1 cut(s) 987
Cfr10I RCCGGY 1 cut(s) 1812
Cfr13I GGNCC 2 cut(s) 484, 1836
CseI GACGC 1 cut(s) 305
Csp6I GTAC 1 cut(s) 1648
CspAI ACCGGT 1 cut(s) 1812
CviQI GTAC 1 cut(s) 1648
DdeI CTNAG 5 cut(s) 82, 672, 882, 1224, 1730
DpnI GATC 2 cut(s) 851, 1179
DpnII GATC 2 cut(s) 849, 1177
Eam1104I CTCTTC 3 cut(s) 1092, 1547, 1829
EarI CTCTTC 3 cut(s) 1092, 1547, 1829
Ecl136II GAGCTC 2 cut(s) 174, 412
Eco105I TACGTA 2 cut(s) 824, 1363
Eco130I CCWWGG 2 cut(s) 40, 1288
Eco147I AGGCCT 2 cut(s) 23, 1211
Eco24I GRGCYC 2 cut(s) 176, 414
Eco47I GGWCC 2 cut(s) 484, 1836
Eco53kI GAGCTC 2 cut(s) 174, 412
Eco57I CTGAAG 4 cut(s) 54, 1116, 1571, 1810
Eco91I GGTNACC 1 cut(s) 754
EcoICRI GAGCTC 2 cut(s) 174, 412
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 1836
EcoO65I GGTNACC 1 cut(s) 754
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 3 cut(s) 18, 1351, 1456
EcoT14I CCWWGG 2 cut(s) 40, 1288
EcoT22I ATGCAT 1 cut(s) 795
EcoT38I GRGCYC 2 cut(s) 176, 414
ErhI CCWWGG 2 cut(s) 40, 1288
FalI AAGNNNNNCTT 2 cut(s) 824, 856
FaqI GGGAC 3 cut(s) 871, 1574, 1849
FauI CCCGC 1 cut(s) 611
Fnu4HI GCNGC 8 cut(s) 75, 78, 431, 558, 966, 988, 1275, 1317
FokI GGATG 7 cut(s) 439, 544, 727, 857, 937, 1142, 1506
FriOI GRGCYC 2 cut(s) 176, 414
Fsp4HI GCNGC 8 cut(s) 75, 78, 431, 558, 966, 988, 1275, 1317
FspBI CTAG 6 cut(s) 51, 177, 1184, 1298, 1304, 1320
GlaI GCGC 1 cut(s) 986
GluI GCNGC 8 cut(s) 75, 78, 431, 558, 966, 988, 1275, 1317
GsaI CCCAGC 2 cut(s) 293, 1197
GsuI CTGGAG 1 cut(s) 1592
HaeIII GGCC 4 cut(s) 23, 800, 1211, 1683
HapII CCGG 2 cut(s) 434, 1813
HgaI GACGC 1 cut(s) 305
HhaI GCGC 1 cut(s) 987
Hin6I GCGC 1 cut(s) 985
HinP1I GCGC 1 cut(s) 985
HinfI GANTC 7 cut(s) 54, 228, 692, 899, 1284, 1561, 1726
HpaII CCGG 2 cut(s) 434, 1813
HphI GGTGA 5 cut(s) 305, 389, 766, 1754, 1811
Hpy166II GTNNAC 3 cut(s) 568, 1325, 1650
Hpy188I TCNGA 6 cut(s) 522, 541, 1129, 1428, 1531, 1699
Hpy188III TCNNGA 6 cut(s) 177, 509, 737, 812, 1001, 1012
Hpy8I GTNNAC 3 cut(s) 568, 1325, 1650
HpyAV CCTTC 3 cut(s) 34, 364, 719
HpyCH4III ACNGT 6 cut(s) 153, 247, 612, 652, 745, 760
HpyCH4IV ACGT 3 cut(s) 823, 1362, 1694
HpyF10VI GCNNNNNNNGC 8 cut(s) 74, 83, 215, 286, 962, 1145, 1271, 1313
HpyF3I CTNAG 5 cut(s) 82, 672, 882, 1224, 1730
HpySE526I ACGT 3 cut(s) 823, 1362, 1694
HspAI GCGC 1 cut(s) 985
Kzo9I GATC 2 cut(s) 849, 1177
LmnI GCTCC 2 cut(s) 264, 409
Lsp1109I GCAGC 4 cut(s) 64, 86, 544, 1328
LweI GCATC 5 cut(s) 417, 522, 589, 915, 1795
MaeI CTAG 6 cut(s) 51, 177, 1184, 1298, 1304, 1320
MaeII ACGT 3 cut(s) 823, 1362, 1694
MaeIII GTNAC 8 cut(s) 293, 640, 745, 754, 1035, 1048, 1562, 1742
MalI GATC 2 cut(s) 851, 1179
MboI GATC 2 cut(s) 849, 1177
MboII GAAGA 6 cut(s) 178, 1109, 1172, 1426, 1564, 1816
MfeI CAATTG 1 cut(s) 1671
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 3 cut(s) 176, 414, 958
MlyI GAGTC 3 cut(s) 701, 1293, 1570
MmeI TCCRAC 1 cut(s) 1107
Mph1103I ATGCAT 1 cut(s) 795
MseI TTAA 3 cut(s) 765, 1155, 1632
MspA1I CMGCKG 1 cut(s) 77
MspI CCGG 2 cut(s) 434, 1813
MspR9I CCNGG 3 cut(s) 20, 1353, 1458
MunI CAATTG 1 cut(s) 1671
Mva1269I GAATGC 2 cut(s) 337, 688
MvaI CCWGG 3 cut(s) 20, 1353, 1458
MvnI CGCG 1 cut(s) 987
MwoI GCNNNNNNNGC 8 cut(s) 74, 83, 215, 286, 962, 1145, 1271, 1313
NcoI CCATGG 2 cut(s) 40, 1288
NdeII GATC 2 cut(s) 849, 1177
NlaIV GGNNCC 1 cut(s) 1837
NmuCI GTSAC 4 cut(s) 293, 754, 1562, 1742
NsiI ATGCAT 1 cut(s) 795
NspI RCATGY 4 cut(s) 49, 271, 574, 1281
NspV TTCGAA 1 cut(s) 34
PaeI GCATGC 1 cut(s) 49
PagI TCATGA 2 cut(s) 508, 811
PasI CCCWGGG 1 cut(s) 1352
PceI AGGCCT 2 cut(s) 23, 1211
PciI ACATGT 2 cut(s) 267, 570
PctI GAATGC 2 cut(s) 337, 688
PfeI GAWTC 4 cut(s) 54, 228, 899, 1726
PinAI ACCGGT 1 cut(s) 1812
PkrI GCNGC 8 cut(s) 76, 79, 432, 559, 967, 989, 1276, 1318
PleI GAGTC 3 cut(s) 700, 1292, 1569
PpsI GAGTC 3 cut(s) 700, 1292, 1569
Ppu21I YACGTR 2 cut(s) 824, 1363
PpuMI RGGWCCY 1 cut(s) 1836
PscI ACATGT 2 cut(s) 267, 570
Psp124BI GAGCTC 2 cut(s) 176, 414
Psp5II RGGWCCY 1 cut(s) 1836
Psp6I CCWGG 3 cut(s) 18, 1351, 1456
PspEI GGTNACC 1 cut(s) 754
PspFI CCCAGC 2 cut(s) 289, 1193
PspGI CCWGG 3 cut(s) 18, 1351, 1456
PspN4I GGNNCC 1 cut(s) 1837
PspPI GGNCC 2 cut(s) 484, 1836
PspPPI RGGWCCY 1 cut(s) 1836
PstI CTGCAG 1 cut(s) 171
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 1 cut(s) 1177
PvuII CAGCTG 1 cut(s) 77
RsaI GTAC 1 cut(s) 1649
RsaNI GTAC 1 cut(s) 1648
SacI GAGCTC 2 cut(s) 176, 414
SaqAI TTAA 3 cut(s) 765, 1155, 1632
SatI GCNGC 8 cut(s) 75, 78, 431, 558, 966, 988, 1275, 1317
Sau3AI GATC 2 cut(s) 849, 1177
Sau96I GGNCC 2 cut(s) 484, 1836
SchI GAGTC 3 cut(s) 701, 1293, 1570
ScrFI CCNGG 3 cut(s) 20, 1353, 1458
SduI GDGCHC 3 cut(s) 176, 414, 958
SfaNI GCATC 5 cut(s) 417, 522, 589, 915, 1795
SfcI CTRYAG 2 cut(s) 167, 1337
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 2 cut(s) 484, 1836
SmlI CTYRAG 1 cut(s) 1001
SmoI CTYRAG 1 cut(s) 1001
SnaBI TACGTA 2 cut(s) 824, 1363
SphI GCATGC 1 cut(s) 49
SseBI AGGCCT 2 cut(s) 23, 1211
SsiI CCGC 7 cut(s) 431, 604, 903, 965, 987, 1108, 1274
SspI AATATT 1 cut(s) 1378
SspMI CTAG 6 cut(s) 51, 177, 1184, 1298, 1304, 1320
SstI GAGCTC 2 cut(s) 176, 414
StuI AGGCCT 2 cut(s) 23, 1211
StyD4I CCNGG 3 cut(s) 18, 1351, 1456
StyI CCWWGG 2 cut(s) 40, 1288
TaaI ACNGT 6 cut(s) 153, 247, 612, 652, 745, 760
TaiI ACGT 3 cut(s) 826, 1365, 1697
TaqI TCGA 5 cut(s) 34, 133, 418, 918, 1011
TatI WGTACW 1 cut(s) 1647
TauI GCSGC 4 cut(s) 433, 968, 990, 1277
TfiI GAWTC 4 cut(s) 54, 228, 899, 1726
Tru1I TTAA 3 cut(s) 765, 1155, 1632
Tru9I TTAA 3 cut(s) 765, 1155, 1632
TscAI CASTG 4 cut(s) 166, 250, 657, 1332
TseFI GTSAC 4 cut(s) 293, 754, 1562, 1742
TseI GCWGC 4 cut(s) 74, 77, 557, 1316
Tsp45I GTSAC 4 cut(s) 293, 754, 1562, 1742
TspDTI ATGAA 5 cut(s) 145, 497, 738, 800, 1146
TspGWI ACGGA 1 cut(s) 1790
TspRI CASTG 4 cut(s) 166, 250, 657, 1332
VpaK11BI GGWCC 2 cut(s) 484, 1836
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 4 cut(s) 135, 912, 1452, 1600
XbaI TCTAGA 1 cut(s) 176
XceI RCATGY 4 cut(s) 49, 271, 574, 1281
XspI CTAG 6 cut(s) 51, 177, 1184, 1298, 1304, 1320
Zsp2I ATGCAT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.