Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

11524834 .. 11528969

Gene Structure 4136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0140200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2817 bp

ATGGGAAGGAACTTGCGAGAAAAACAGCCTAGGGATGCAACAGGGAATGAGCGTCCAGGGACTCCAGGGTGTGTATGGGGCATGCTACATGTCATGAAGTATCACCACTGGCATTATGTCAAGAAAAGACTTATGTACAAGAAGCGTGGCAATAATAAAAATGGTGCAGGAGTTGGAAATCATGGGAATTGTGGAAATGCATGTAGTCTTCAGAATATACAAGACAATGATGCTAAGATGGACAAAACTACTCCTGCCGAAGAAATGATAAATCCGTTGAGTCCAACATCCAAAGCTTCTGTTAAGGCCCGAATAAAAGCACGAATTGCTGAAGAAATGGCTAAGAAGAGGGGCAGATATAACCGGACTTCCAGCTGTCCTGTACGATCACAATTGACACGAACAGAATCGATACATCATTTCGAACCACCTTCAAATATGGATCCAATTGCTGAAATGGTATTGAATGAGGCAAGTCCTCGACCTGTTGCTCACAAAAACAAGGAAAGCTCTTCTTCTGAAGAACCAAGTACTAGTGTCGACAACAATTGTGCAGAGAGCAGTCCAATGAGTGTTACTGGAGATCCCACAGTGGATCATGTCCCGGTTAATGAGAACCAAAAGGATGAGCCACTTAGTCAAGAACAGCTAGACAATGACACAGTACAAGATATGTTAGAGAAGAAGTTGATACATGTTAAAGAACTTGACGCAGATTCTTCGGTCCATCAAAAGGAGTATCTAGAGGCTTTGGATATAATTAATGTAAACAAAGAGTTACTAGTGAAAATTTTACATGATCCGGGTTCTCCTCTAGTTCAGCACTTCCAGAATCAACAAGCAGTCAGCGCAAAAACGAGTTTAACCAAGGCAGAGTCATTTCCTATGCCTGGTTCATCAGGCAAAGGAGGTTCTGAACCTACTAAGCTCAAACCCAAGCATGAGCCAAAAGATGGTAGTCCAGCTCGAAAACCTACATGGTCTACTTCATTGAAATATGCTGGGGAACGGCCAATGCCATCGATTACTGATCAGAATATGGAGAGTTCATCTTCCCTTTCTCAACCCAGTTTGATGAGTCAAGGTGAGAATCCGGTGGCAATTAAGCGTTTCAAGGATCTTAGACAAAAAATAAAGCACGTGATTAAGGAGAGTAAACAAGAGAGACATGTGATTTCCATGGAGGCCATCCTTCACAAGATTCCTCATGGAAAAAAGCTCACTAAAGAACTAGAGCAGGAGATTGTTAGCCATTCGAAGGACCCTGCATTGCATAGAGAAGGTAAAGATAGTCCAAGTAGTTATGGAAGTGATCATTCAGTTTCTCCCCTAAAGAAAAAAATGCCCAACATGAGAAGAACATCATCTTTCGATGCATCACTTGATAGGTACCGCAGGTTGTATGAGACGACTAGTTTCAAGAAAGAGGACAAATGCCAGCCATCATCTGAGAGATTGAAAGTTAGAGTAGAAGATTCAGGCTCACCATTCCAGAGCTCACCTTTCCGAAAAGCTCCCAAAAGTCTGGGAAGAATTTACTCCTTACCTGATATGGAATCATACTATCAGAATGAGGAATCTCCAGATGGTTTTCCTCCTCCATCGCTATTTAAGACCGGTGTGGATGGAAATGCAAGCACAAAAAGCAGATTTAGTGAACAAAAGAGGGAGCTTTCTGTAGGTTCAGAAAATGAGTTGCAGTTAGATTTTCCTATAGAAAGTGAAGTCCGAGCAAACTTGGATGATGCTACTGAAACTAATGCAGTTACTAGAGATAAGGTGGAATCTACATCAGTTGTGCGCGATGAGACAAGTTCTAAGGTGTCAAATGATGAATTTGATAAATTGGCAACAGGGGACAGTATTTCTCATAAAGAACAAGATACTAAAACTAATGCAGTTACTAGAGATAAGGTGGAATCTACATCAGTTGCGCATGATGAGACAAGTTCTAAGGTGTCAAAAGATGAATTTGAAAAAATAACAACAGGGGACAGTGTTTCTCATACAGAACAAGATACTGAGCCTCATTTAGAAGCCATTACCAGTGTTTCAGATCCCTTACCCATGTACGTGCCTAACATCAATGCTCTACAAGATATATCCAGCCCGAGAAAATGTTCCCAGTCTGAAGGAGAAGAATTGGAATTAAAGCATGAAGATGGACCAGATAACTTGGACAACAAGCAAGGGAAGGAGCCTGATATTGATACCACTAATGTAGTTAGCAGTGGATTGGATACTGAGGAAGTAGAAACTCCTACAAGACACTCGTGTTATGACTTGAGTCATGTTCAAGTTGATGAAAGAGATATGGCCGAGTTTAATTATGTGAGAGATGTGTTGGAGTTTTCTGGATTCAGAGGAAACGAGTGCCTTGGGACTTGGCATGCTGATGATCCGCCAGTCTATCCTTTGCTATATGAGGGCGCAGAAGGCTGCTTCGTTCTTGATCCTGATTGTGCAGGAAATGAAGAAGATGGTGAATGTGATCACTTGCTCTTGTTTGATCTAATCAATGAAGTGTTGATGGAGATTTATGGGAGGTCATACAACTACTGTCCAACGGCCCTGTCTTCGCTATGTTACATTCGTCTAATGCCAGCAGGACACCATGTTCTGAAGGAAGTGTGGGCCCTTATAAGCTGGTACTTGAGCTTGAGACCGGCCGTTGATCAATCATTAGATTATATTGTGAGTAACGATCTAGCAAAGAATGATGGTTGGATGAACCTCCAATTTGATTCTGAATGTATAGGGATTGAATTGGAGGACCTAATTTTTGATGAACTTTTAGAGGAAGCTCTCTGGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

938

Amino Acids

105.06

Weight (kDa)

5.25

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3741	PF12552	228 - 270	1.2e-11	Protein of unknown function (DUF3741)
DUF4378	PF14309	774 - 934	5.1e-39	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2642
Acc16I	TGCGCA	1 cut(s)	1935
Acc36I	ACCTGC	1 cut(s)	1386
Acc65I	GGTACC	1 cut(s)	1389
AccB1I	GGYRCC	1 cut(s)	1389
AccB7I	CCANNNNNTGG	1 cut(s)	953
AccI	GTMKAC	2 cut(s)	540, 983
AccII	CGCG	1 cut(s)	1803
AciI	CCGC	2 cut(s)	1393, 2402
AclWI	GGATC	9 cut(s)	437, 450, 578, 603, 794, 1125, 2051, 2393, 2447
AcoI	YGGCCR	3 cut(s)	1010, 2316, 2667
AcsI	RAATTY	4 cut(s)	789, 1533, 1835, 1970
AcuI	CTGAAG	5 cut(s)	194, 351, 540, 2151, 2642
AcvI	CACGTG	1 cut(s)	1141
AfaI	GTAC	7 cut(s)	137, 384, 532, 666, 1391, 2072, 2651
AfiI	CCNNNNNNNGG	4 cut(s)	733, 890, 953, 1258
AflIII	ACRYGT	3 cut(s)	88, 694, 1168
AgeI	ACCGGT	1 cut(s)	1616
AgsI	TTSAA	9 cut(s)	435, 466, 994, 1114, 1420, 1459, 1976, 2297, 2765
AhlI	ACTAGT	3 cut(s)	533, 781, 1412
AjnI	CCWGG	3 cut(s)	55, 64, 889
AloI	GAACNNNNNNTCC	2 cut(s)	2601, 2633
Alw21I	GWGCWC	1 cut(s)	1499
Alw26I	GTCTC	5 cut(s)	1159, 1400, 1802, 1937, 2656
AlwI	GGATC	9 cut(s)	437, 450, 578, 603, 794, 1125, 2051, 2393, 2447
Ama87I	CYCGRG	1 cut(s)	2110
AoxI	GGCC	7 cut(s)	306, 1010, 1185, 2316, 2568, 2634, 2667
ApaI	GGGCCC	1 cut(s)	2638
ApeKI	GCWGC	1 cut(s)	2439
ApoI	RAATTY	4 cut(s)	789, 1533, 1835, 1970
ArsI	GACNNNNNNTTYG	2 cut(s)	2765, 2797
AseI	ATTAAT	1 cut(s)	762
AsiGI	ACCGGT	1 cut(s)	1616
Asp700I	GAANNNNTTC	1 cut(s)	2119
Asp718I	GGTACC	1 cut(s)	1389
AspA2I	CCTAGG	1 cut(s)	29
AspLEI	GCGC	4 cut(s)	851, 1803, 1936, 2432
AspS9I	GGNCC	8 cut(s)	307, 724, 1261, 2165, 2569, 2634, 2635, 2773
AsuC2I	CCSGG	2 cut(s)	605, 804
AsuHPI	GGTGA	5 cut(s)	95, 1097, 1476, 1491, 2495
AsuII	TTCGAA	2 cut(s)	423, 1256
AvaI	CYCGRG	1 cut(s)	2110
AvaII	GGWCC	4 cut(s)	724, 1261, 2165, 2773
AvrII	CCTAGG	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	2638
BamHI	GGATCC	1 cut(s)	442
BanI	GGYRCC	1 cut(s)	1389
BanII	GRGCYC	2 cut(s)	1499, 2638
BauI	CACGAG	1 cut(s)	2272
BbrPI	CACGTG	1 cut(s)	1141
BbsI	GAAGAC	2 cut(s)	200, 2568
Bbv12I	GWGCWC	1 cut(s)	1499
BbvI	GCAGC	1 cut(s)	2426
BceAI	ACGGC	3 cut(s)	1025, 2583, 2654
BcgI	CGANNNNNNTGC	2 cut(s)	702, 736
BciT130I	CCWGG	3 cut(s)	57, 66, 891
BciVI	GTATCC	1 cut(s)	2233
BclI	TGATCA	4 cut(s)	1030, 1312, 2491, 2674
BcnI	CCSGG	2 cut(s)	605, 804
BcoDI	GTCTC	5 cut(s)	1159, 1400, 1802, 1937, 2656
BcuI	ACTAGT	3 cut(s)	533, 781, 1412
BfmI	CTRYAG	2 cut(s)	1677, 1713
BfuAI	ACCTGC	1 cut(s)	1386
BfuI	GTATCC	1 cut(s)	2233
BisI	GCNGC	1 cut(s)	2440
BlnI	CCTAGG	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	2441
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	5 cut(s)	57, 66, 605, 804, 891
Bme18I	GGWCC	4 cut(s)	724, 1261, 2165, 2773
BmeT110I	CYCGRG	1 cut(s)	2110
BmgT120I	GGNCC	8 cut(s)	307, 724, 1261, 2165, 2569, 2634, 2635, 2773
BmiI	GGNNCC	5 cut(s)	444, 1263, 1391, 2199, 2636
BmrFI	CCNGG	5 cut(s)	57, 66, 605, 804, 891
BmrI	ACTGGG	2 cut(s)	1062, 2119
BmsI	GCATC	5 cut(s)	25, 220, 1363, 1385, 1735
BmuI	ACTGGG	2 cut(s)	1062, 2119
BoxI	GACNNNNGTC	1 cut(s)	2286
BpiI	GAAGAC	2 cut(s)	200, 2568
BpmI	CTGGAG	3 cut(s)	48, 600, 1566
Bpu14I	TTCGAA	2 cut(s)	423, 1256
BpuEI	CTTGAG	3 cut(s)	2305, 2674, 2680
BpuMI	CCSGG	2 cut(s)	605, 804
Bsa29I	ATCGAT	2 cut(s)	410, 1022
BsaAI	YACGTR	2 cut(s)	1141, 2074
BsaI	GGTCTC	1 cut(s)	2656
BsaJI	CCNNGG	6 cut(s)	29, 56, 65, 867, 1179, 2377
BsaWI	WCCGGW	3 cut(s)	363, 1093, 1616
Bsc4I	CCNNNNNNNGG	4 cut(s)	733, 890, 953, 1258
Bse118I	RCCGGY	2 cut(s)	1616, 2665
Bse1I	ACTGG	6 cut(s)	113, 583, 1068, 2046, 2125, 2405
Bse3DI	GCAATG	1 cut(s)	1268
BseBI	CCWGG	3 cut(s)	57, 66, 891
BseCI	ATCGAT	2 cut(s)	410, 1022
BseDI	CCNNGG	6 cut(s)	29, 56, 65, 867, 1179, 2377
BseGI	GGATG	7 cut(s)	40, 287, 631, 1188, 1630, 1747, 2733
BseLI	CCNNNNNNNGG	4 cut(s)	733, 890, 953, 1258
BseMI	GCAATG	1 cut(s)	1268
BseMII	CTCAG	3 cut(s)	1440, 2013, 2235
BseNI	ACTGG	6 cut(s)	113, 583, 1068, 2046, 2125, 2405
BseRI	GAGGAG	2 cut(s)	801, 1587
BseSI	GKGCMC	1 cut(s)	2638
BseX3I	CGGCCG	1 cut(s)	2667
BseXI	GCAGC	1 cut(s)	2426
BseYI	CCCAGC	1 cut(s)	1001
BsgI	GTGCAG	3 cut(s)	186, 573, 2484
Bsh1236I	CGCG	1 cut(s)	1803
Bsh1285I	CGRYCG	1 cut(s)	2670
BshFI	GGCC	7 cut(s)	308, 1012, 1187, 2318, 2570, 2636, 2669
BshNI	GGYRCC	1 cut(s)	1389
BshTI	ACCGGT	1 cut(s)	1616
BshVI	ATCGAT	2 cut(s)	410, 1022
BsiEI	CGRYCG	1 cut(s)	2670
BsiHKAI	GWGCWC	1 cut(s)	1499
BsiHKCI	CYCGRG	1 cut(s)	2110
BsiSI	CCGG	6 cut(s)	364, 605, 803, 1094, 1617, 2666
BslFI	GGGAC	5 cut(s)	73, 587, 1871, 2006, 2395
BslI	CCNNNNNNNGG	4 cut(s)	733, 890, 953, 1258
BsmAI	GTCTC	5 cut(s)	1159, 1400, 1802, 1937, 2656
BsmBI	CGTCTC	1 cut(s)	1400
BsmFI	GGGAC	5 cut(s)	73, 587, 1871, 2006, 2395
BsnI	GGCC	7 cut(s)	308, 1012, 1187, 2318, 2570, 2636, 2669
Bso31I	GGTCTC	1 cut(s)	2656
BsoBI	CYCGRG	1 cut(s)	2110
Bsp119I	TTCGAA	2 cut(s)	423, 1256
Bsp120I	GGGCCC	1 cut(s)	2634
Bsp1286I	GDGCHC	2 cut(s)	1499, 2638
Bsp1407I	TGTACA	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	1179
BspACI	CCGC	2 cut(s)	1393, 2402
BspANI	GGCC	7 cut(s)	308, 1012, 1187, 2318, 2570, 2636, 2669
BspCNI	CTCAG	3 cut(s)	1441, 2014, 2236
BspDI	ATCGAT	2 cut(s)	410, 1022
BspFNI	CGCG	1 cut(s)	1803
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	5 cut(s)	444, 1263, 1391, 2199, 2636
BspMI	ACCTGC	1 cut(s)	1386
BspPI	GGATC	9 cut(s)	437, 450, 578, 603, 794, 1125, 2051, 2393, 2447
BspQI	GCTCTTC	1 cut(s)	517
BspT104I	TTCGAA	2 cut(s)	423, 1256
BspT107I	GGYRCC	1 cut(s)	1389
BspTNI	GGTCTC	1 cut(s)	2656
BsrDI	GCAATG	1 cut(s)	1268
BsrFI	RCCGGY	2 cut(s)	1616, 2665
BsrGI	TGTACA	1 cut(s)	135
BsrI	ACTGG	6 cut(s)	113, 583, 1068, 2046, 2125, 2405
BssAI	RCCGGY	2 cut(s)	1616, 2665
BssECI	CCNNGG	6 cut(s)	29, 56, 65, 867, 1179, 2377
BssSI	CACGAG	1 cut(s)	2272
BssT1I	CCWWGG	4 cut(s)	29, 867, 1179, 2377
Bst2BI	CACGAG	1 cut(s)	2272
Bst2UI	CCWGG	3 cut(s)	57, 66, 891
Bst4CI	ACNGT	5 cut(s)	592, 664, 1862, 1997, 2561
Bst6I	CTCTTC	2 cut(s)	341, 517
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstAUI	TGTACA	1 cut(s)	135
BstBAI	YACGTR	2 cut(s)	1141, 2074
BstBI	TTCGAA	2 cut(s)	423, 1256
BstC8I	GCNNGC	5 cut(s)	83, 1439, 1636, 2391, 2604
BstDSI	CCRYGG	1 cut(s)	1179
BstF5I	GGATG	7 cut(s)	40, 287, 631, 1188, 1630, 1747, 2733
BstFNI	CGCG	1 cut(s)	1803
BstHHI	GCGC	4 cut(s)	851, 1803, 1936, 2432
BstMAI	GTCTC	5 cut(s)	1159, 1400, 1802, 1937, 2656
BstMCI	CGRYCG	1 cut(s)	2670
BstMWI	GCNNNNNNNGC	4 cut(s)	326, 848, 1644, 2436
BstNI	CCWGG	3 cut(s)	57, 66, 891
BstNSI	RCATGY	6 cut(s)	85, 92, 204, 698, 1172, 2393
BstPAI	GACNNNNGTC	1 cut(s)	2286
BstSCI	CCNGG	5 cut(s)	55, 64, 603, 802, 889
BstSFI	CTRYAG	2 cut(s)	1677, 1713
BstSLI	GKGCMC	1 cut(s)	2638
BstUI	CGCG	1 cut(s)	1803
BstV1I	GCAGC	1 cut(s)	2426
BstV2I	GAAGAC	2 cut(s)	200, 2568
BstX2I	RGATCY	4 cut(s)	442, 583, 1117, 2056
BstXI	CCANNNNNNTGG	1 cut(s)	1525
BstYI	RGATCY	4 cut(s)	442, 583, 1117, 2056
BstZI	CGGCCG	1 cut(s)	2667
Bsu15I	ATCGAT	2 cut(s)	410, 1022
BsuI	GTATCC	1 cut(s)	2233
BsuRI	GGCC	7 cut(s)	308, 1012, 1187, 2318, 2570, 2636, 2669
BsuTUI	ATCGAT	2 cut(s)	410, 1022
BtgI	CCRYGG	1 cut(s)	1179
BtgZI	GCGATG	2 cut(s)	1587, 1818
BtsCI	GGATG	7 cut(s)	40, 287, 631, 1188, 1630, 1747, 2733
BtsI	GCAGTG	1 cut(s)	2236
BtsIMutI	CAGTG	5 cut(s)	106, 597, 2002, 2053, 2236
BveI	ACCTGC	1 cut(s)	1386
Cac8I	GCNNGC	5 cut(s)	83, 1439, 1636, 2391, 2604
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	4 cut(s)	851, 1803, 1936, 2432
Cfr10I	RCCGGY	2 cut(s)	1616, 2665
Cfr13I	GGNCC	8 cut(s)	307, 724, 1261, 2165, 2569, 2634, 2635, 2773
ClaI	ATCGAT	2 cut(s)	410, 1022
CseI	GACGC	2 cut(s)	41, 719
Csp6I	GTAC	7 cut(s)	136, 383, 531, 665, 1390, 2071, 2650
CspAI	ACCGGT	1 cut(s)	1616
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviQI	GTAC	7 cut(s)	136, 383, 531, 665, 1390, 2071, 2650
EaeI	YGGCCR	3 cut(s)	1010, 2316, 2667
EagI	CGGCCG	1 cut(s)	2667
Eam1104I	CTCTTC	2 cut(s)	341, 517
EarI	CTCTTC	2 cut(s)	341, 517
EciI	GGCGGA	1 cut(s)	2391
Ecl136II	GAGCTC	1 cut(s)	1497
EclXI	CGGCCG	1 cut(s)	2667
Eco130I	CCWWGG	4 cut(s)	29, 867, 1179, 2377
Eco24I	GRGCYC	2 cut(s)	1499, 2638
Eco31I	GGTCTC	1 cut(s)	2656
Eco47I	GGWCC	4 cut(s)	724, 1261, 2165, 2773
Eco52I	CGGCCG	1 cut(s)	2667
Eco53kI	GAGCTC	1 cut(s)	1497
Eco57I	CTGAAG	5 cut(s)	194, 351, 540, 2151, 2642
Eco72I	CACGTG	1 cut(s)	1141
Eco88I	CYCGRG	1 cut(s)	2110
EcoICRI	GAGCTC	1 cut(s)	1497
EcoO109I	RGGNCCY	3 cut(s)	1261, 2635, 2773
EcoRII	CCWGG	3 cut(s)	55, 64, 889
EcoT14I	CCWWGG	4 cut(s)	29, 867, 1179, 2377
EcoT22I	ATGCAT	2 cut(s)	202, 1378
EcoT38I	GRGCYC	2 cut(s)	1499, 2638
ErhI	CCWWGG	4 cut(s)	29, 867, 1179, 2377
Esp3I	CGTCTC	1 cut(s)	1400
FalI	AAGNNNNNCTT	2 cut(s)	499, 531
FaqI	GGGAC	5 cut(s)	73, 587, 1871, 2006, 2395
FbaI	TGATCA	4 cut(s)	1030, 1312, 2491, 2674
FblI	GTMKAC	2 cut(s)	540, 983
Fnu4HI	GCNGC	1 cut(s)	2440
FokI	GGATG	7 cut(s)	47, 274, 638, 1175, 1637, 1754, 2740
FriOI	GRGCYC	2 cut(s)	1499, 2638
Fsp4HI	GCNGC	1 cut(s)	2440
FspI	TGCGCA	1 cut(s)	1935
GlaI	GCGC	4 cut(s)	850, 1802, 1935, 2431
GluI	GCNGC	1 cut(s)	2440
GsaI	CCCAGC	1 cut(s)	1005
GsuI	CTGGAG	3 cut(s)	48, 600, 1566
HaeIII	GGCC	7 cut(s)	308, 1012, 1187, 2318, 2570, 2636, 2669
HapII	CCGG	6 cut(s)	364, 605, 803, 1094, 1617, 2666
HgaI	GACGC	2 cut(s)	41, 719
HhaI	GCGC	4 cut(s)	851, 1803, 1936, 2432
Hin6I	GCGC	4 cut(s)	849, 1801, 1934, 2430
HinP1I	GCGC	4 cut(s)	849, 1801, 1934, 2430
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	294
HpaII	CCGG	6 cut(s)	364, 605, 803, 1094, 1617, 2666
HphI	GGTGA	5 cut(s)	95, 1097, 1476, 1491, 2495
Hpy166II	GTNNAC	5 cut(s)	541, 769, 984, 1157, 1658
Hpy8I	GTNNAC	5 cut(s)	541, 769, 984, 1157, 1658
HpyAV	CCTTC	8 cut(s)	441, 1202, 1252, 1274, 2126, 2188, 2429, 2617
HpyCH4III	ACNGT	5 cut(s)	592, 664, 1862, 1997, 2561
HpyCH4IV	ACGT	2 cut(s)	1140, 2073
HpyF10VI	GCNNNNNNNGC	4 cut(s)	326, 848, 1644, 2436
HpySE526I	ACGT	2 cut(s)	1140, 2073
HspAI	GCGC	4 cut(s)	849, 1801, 1934, 2430
KpnI	GGTACC	1 cut(s)	1393
Ksp22I	TGATCA	4 cut(s)	1030, 1312, 2491, 2674
LguI	GCTCTTC	1 cut(s)	517
LmnI	GCTCC	3 cut(s)	1519, 1669, 2197
Lsp1109I	GCAGC	1 cut(s)	2426
LweI	GCATC	5 cut(s)	25, 220, 1363, 1385, 1735
MaeII	ACGT	2 cut(s)	1140, 2073
MaeIII	GTNAC	6 cut(s)	574, 777, 1765, 1900, 2585, 2699
MfeI	CAATTG	3 cut(s)	392, 447, 547
MflI	RGATCY	4 cut(s)	442, 583, 1117, 2056
MhlI	GDGCHC	2 cut(s)	1499, 2638
MlyI	GAGTC	5 cut(s)	55, 289, 884, 1087, 2296
MmeI	TCCRAC	5 cut(s)	154, 308, 2325, 2588, 2705
Mph1103I	ATGCAT	2 cut(s)	202, 1378
MroXI	GAANNNNTTC	1 cut(s)	2119
MslI	CAYNNNNRTG	3 cut(s)	2072, 2160, 2394
MspA1I	CMGCKG	1 cut(s)	375
MspI	CCGG	6 cut(s)	364, 605, 803, 1094, 1617, 2666
MspR9I	CCNGG	5 cut(s)	57, 66, 605, 804, 891
MunI	CAATTG	3 cut(s)	392, 447, 547
MvaI	CCWGG	3 cut(s)	57, 66, 891
MvnI	CGCG	1 cut(s)	1803
MwoI	GCNNNNNNNGC	4 cut(s)	326, 848, 1644, 2436
NciI	CCSGG	2 cut(s)	605, 804
NcoI	CCATGG	1 cut(s)	1179
NlaIV	GGNNCC	5 cut(s)	444, 1263, 1391, 2199, 2636
NmeAIII	GCCGAG	1 cut(s)	2344
NsbI	TGCGCA	1 cut(s)	1935
NsiI	ATGCAT	2 cut(s)	202, 1378
NspI	RCATGY	6 cut(s)	85, 92, 204, 698, 1172, 2393
NspV	TTCGAA	2 cut(s)	423, 1256
PaeI	GCATGC	2 cut(s)	85, 2393
PagI	TCATGA	1 cut(s)	93
PciI	ACATGT	3 cut(s)	88, 694, 1168
PciSI	GCTCTTC	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	2119
PflMI	CCANNNNNTGG	1 cut(s)	953
PinAI	ACCGGT	1 cut(s)	1616
PkrI	GCNGC	1 cut(s)	2441
PleI	GAGTC	5 cut(s)	55, 288, 883, 1086, 2295
PmaCI	CACGTG	1 cut(s)	1141
PmlI	CACGTG	1 cut(s)	1141
PpsI	GAGTC	5 cut(s)	55, 288, 883, 1086, 2295
Ppu21I	YACGTR	2 cut(s)	1141, 2074
PpuMI	RGGWCCY	2 cut(s)	1261, 2773
PscI	ACATGT	3 cut(s)	88, 694, 1168
PshAI	GACNNNNGTC	1 cut(s)	2286
PshBI	ATTAAT	1 cut(s)	762
PsiI	TTATAA	1 cut(s)	2642
Psp124BI	GAGCTC	1 cut(s)	1499
Psp5II	RGGWCCY	2 cut(s)	1261, 2773
Psp6I	CCWGG	3 cut(s)	55, 64, 889
PspCI	CACGTG	1 cut(s)	1141
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	3 cut(s)	55, 64, 889
PspN4I	GGNNCC	5 cut(s)	444, 1263, 1391, 2199, 2636
PspOMI	GGGCCC	1 cut(s)	2634
PspPI	GGNCC	8 cut(s)	307, 724, 1261, 2165, 2569, 2634, 2635, 2773
PspPPI	RGGWCCY	2 cut(s)	1261, 2773
PsuI	RGATCY	4 cut(s)	442, 583, 1117, 2056
PvuII	CAGCTG	1 cut(s)	375
RsaI	GTAC	7 cut(s)	137, 384, 532, 666, 1391, 2072, 2651
RsaNI	GTAC	7 cut(s)	136, 383, 531, 665, 1390, 2071, 2650
RseI	CAYNNNNRTG	3 cut(s)	2072, 2160, 2394
SacI	GAGCTC	1 cut(s)	1499
SalI	GTCGAC	1 cut(s)	539
SapI	GCTCTTC	1 cut(s)	517
SatI	GCNGC	1 cut(s)	2440
Sau96I	GGNCC	8 cut(s)	307, 724, 1261, 2165, 2569, 2634, 2635, 2773
ScaI	AGTACT	1 cut(s)	532
SchI	GAGTC	5 cut(s)	55, 289, 884, 1087, 2296
ScrFI	CCNGG	5 cut(s)	57, 66, 605, 804, 891
SduI	GDGCHC	2 cut(s)	1499, 2638
SfaNI	GCATC	5 cut(s)	25, 220, 1363, 1385, 1735
SfcI	CTRYAG	2 cut(s)	1677, 1713
SfuI	TTCGAA	2 cut(s)	423, 1256
SinI	GGWCC	4 cut(s)	724, 1261, 2165, 2773
SmiMI	CAYNNNNRTG	3 cut(s)	2072, 2160, 2394
SmlI	CTYRAG	3 cut(s)	2284, 2653, 2659
SmoI	CTYRAG	3 cut(s)	2284, 2653, 2659
SpeI	ACTAGT	3 cut(s)	533, 781, 1412
SphI	GCATGC	2 cut(s)	85, 2393
SsiI	CCGC	2 cut(s)	1393, 2402
SstI	GAGCTC	1 cut(s)	1499
StyD4I	CCNGG	5 cut(s)	55, 64, 603, 802, 889
StyI	CCWWGG	4 cut(s)	29, 867, 1179, 2377
TaaI	ACNGT	5 cut(s)	592, 664, 1862, 1997, 2561
TaiI	ACGT	2 cut(s)	1143, 2076
TaqI	TCGA	8 cut(s)	410, 423, 481, 540, 967, 1022, 1256, 1371
TaqII	GACCGA	1 cut(s)	712
TatI	WGTACW	3 cut(s)	135, 530, 664
TscAI	CASTG	5 cut(s)	113, 597, 2002, 2053, 2236
TseI	GCWGC	1 cut(s)	2439
TspGWI	ACGGA	1 cut(s)	264
TspRI	CASTG	5 cut(s)	113, 597, 2002, 2053, 2236
Van91I	CCANNNNNTGG	1 cut(s)	953
VpaK11BI	GGWCC	4 cut(s)	724, 1261, 2165, 2773
VspI	ATTAAT	1 cut(s)	762
XapI	RAATTY	4 cut(s)	789, 1533, 1835, 1970
XbaI	TCTAGA	1 cut(s)	742
XceI	RCATGY	6 cut(s)	85, 92, 204, 698, 1172, 2393
XcmI	CCANNNNNNNNNTGG	1 cut(s)	72
XmaJI	CCTAGG	1 cut(s)	29
XmiI	GTMKAC	2 cut(s)	540, 983
XmnI	GAANNNNTTC	1 cut(s)	2119
ZrmI	AGTACT	1 cut(s)	532
Zsp2I	ATGCAT	2 cut(s)	202, 1378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.