Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

13274130 .. 13276372

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G103100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTACTTCAATGGTATCTACGACTTGTTCTACCAGTACAACCCCAAAGGTGCAGCGTGGGGCAACATTGTGCGGGCTCACTCAGTATCTAAAACTGCATGGTGGCATAATGGTCATTGGAGGATTTTGGTGGGTGGCAAGAGAAAGCATAGAGGGATGGCTTGGTTGTACAGAAGTATTGATTTCAAGTACTGGGTGAAGGCCAAGCACCCTCTTCACTCTGCTCCCGAAACTGGCATGTGGGAGTGCCCCGACTTTTTTGCTTTGGCATTGAATGGGAGGAGTGGAGTGGACACATCAAAAGTTGGTGAGGATGTGAAACATATTTTGAAGGTGAGCCTTGATGAGACTAGGTATGAGTACTATACACTTGGAAAATATTTTCCTGAGAAAGATAGGTACGTGCCTGATAATACTTCGGTGGATGGTCGAGCTGGGTTGCGATTGGATTATGGAAACTTTTATGCTTCCAAGACTTTCTTTGATCCTTCAAAGAATATGAGGATTTTGTGGGGCTGGGCTAACGAGTCAGATGCTGCTGACGATGATAAAGCTAAGGGATGGGCTGGAGTTCAGACAATTCCAAGGGTGGTGTGGCTAAGCTCCGATGCTAAACAAGTGGTGCAATGGCCTATCAAAGAATTAGAAACTTTGAGGGGGCAAAAGGTGGACATCAACAATCAAAATGTGGAACAGGGACAGCATGTTGAAGTAAAAGGAATAACTGCTGCTCAGGCCGACGTTGAAGTTACCTTCTCCTTTGGGAGTTTGGAAAAAGCCGAGGAGTTTGATCCTAATTGGGCCAACCTCGATGCCCAAACCGTCTGCAGCCTAAGGCGTTCGGACGTTCCAGGTGGCGTCGGTCCATTCGGGCTCTTGACACTGGCTTCTCAAAACCTGGAGGAGTTTACTCCTATCTTCTTTAGAGTTTTTAAAACTAAAGAGACTAAGCATAAGGTTCTCATGTGCTCTGACGCAAAAAGTTCTTCATTGAGGCCGTTTAATGAAAAGTTGTATAGACCATCATTTGCTGGCTTTGTAGATGTAGATTTATCTGCTGATAAGAAGATTTCACTCAGGAGTTTGATTGATCATTCGGTTGTTGAAAGTTTCGGAGCTGGAGGAAAAACATGCATCACCTCAAGGGTTTATCCCACACTAGCCGTTAACGATGCTGCTCACTTGTTCGTCTTCAACAATGGAACTAAGCCTGTTACGGTCCAGACCCTCTCCGCATGGAGTGTGAATGCTCCTCAACAGATGAACCAAAACTTAAATTCTGAGCATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

431

Amino Acids

48.53

Weight (kDa)

8.43

Isoelectric Point (pI)

28.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	73, 1233
AclWI	GGATC	2 cut(s)	479, 785
AcsI	RAATTY	1 cut(s)	1276
AcyI	GRCGYC	1 cut(s)	858
AfaI	GTAC	6 cut(s)	5, 38, 170, 191, 362, 401
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	9 cut(s)	10, 187, 274, 331, 492, 710, 746, 1106, 1195
AjnI	CCWGG	2 cut(s)	850, 897
AluBI	AGCT	4 cut(s)	434, 554, 603, 1118
AluI	AGCT	4 cut(s)	434, 554, 603, 1118
Alw21I	GWGCWC	1 cut(s)	971
Alw26I	GTCTC	2 cut(s)	341, 938
AlwI	GGATC	2 cut(s)	479, 785
AlwNI	CAGNNNCTG	1 cut(s)	536
AoxI	GGCC	5 cut(s)	201, 629, 735, 801, 995
ApeKI	GCWGC	5 cut(s)	53, 536, 728, 828, 1175
ApoI	RAATTY	1 cut(s)	1276
AspS9I	GGNCC	3 cut(s)	801, 863, 1219
AsuHPI	GGTGA	4 cut(s)	208, 320, 346, 1129
AvaII	GGWCC	2 cut(s)	863, 1219
AxyI	CCTNAGG	1 cut(s)	833
BaeGI	GKGCMC	1 cut(s)	251
BanII	GRGCYC	2 cut(s)	79, 876
BbsI	GAAGAC	1 cut(s)	1183
Bbv12I	GWGCWC	1 cut(s)	971
BbvI	GCAGC	5 cut(s)	65, 523, 715, 840, 1162
BccI	CCATC	4 cut(s)	151, 419, 555, 1030
BceAI	ACGGC	2 cut(s)	982, 1148
BcgI	CGANNNNNNTGC	4 cut(s)	242, 276, 515, 549
BciT130I	CCWGG	2 cut(s)	852, 899
BclI	TGATCA	1 cut(s)	1090
BcoDI	GTCTC	2 cut(s)	341, 938
BfaI	CTAG	2 cut(s)	351, 1160
BfmI	CTRYAG	1 cut(s)	826
BisI	GCNGC	5 cut(s)	54, 537, 729, 829, 1176
BlpI	GCTNAGC	1 cut(s)	599
BlsI	GCNGC	5 cut(s)	55, 538, 730, 830, 1177
BmcAI	AGTACT	2 cut(s)	191, 362
Bme1390I	CCNGG	2 cut(s)	852, 899
Bme18I	GGWCC	2 cut(s)	863, 1219
BmgT120I	GGNCC	3 cut(s)	801, 863, 1219
BmrFI	CCNGG	2 cut(s)	852, 899
BmrI	ACTGGG	1 cut(s)	202
BmsI	GCATC	5 cut(s)	523, 598, 802, 1143, 1162
BmuI	ACTGGG	1 cut(s)	202
BpiI	GAAGAC	1 cut(s)	1183
BpmI	CTGGAG	3 cut(s)	588, 920, 1140
Bpu10I	CCTNAGC	2 cut(s)	555, 732
Bpu1102I	GCTNAGC	1 cut(s)	599
BpuEI	CTTGAG	1 cut(s)	1126
BsaAI	YACGTR	1 cut(s)	403
BsaHI	GRCGYC	1 cut(s)	858
BsaJI	CCNNGG	2 cut(s)	584, 780
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
Bse1I	ACTGG	4 cut(s)	34, 197, 238, 888
Bse21I	CCTNAGG	1 cut(s)	833
Bse3DI	GCAATG	1 cut(s)	632
BseBI	CCWGG	2 cut(s)	852, 899
BseDI	CCNNGG	2 cut(s)	584, 780
BseGI	GGATG	4 cut(s)	162, 319, 430, 566
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMI	GCAATG	1 cut(s)	632
BseMII	CTCAG	5 cut(s)	96, 378, 746, 1090, 1272
BseNI	ACTGG	4 cut(s)	34, 197, 238, 888
BseRI	GAGGAG	4 cut(s)	295, 797, 917, 1242
BseSI	GKGCMC	1 cut(s)	251
BseXI	GCAGC	5 cut(s)	65, 523, 715, 840, 1162
BseYI	CCCAGC	2 cut(s)	434, 516
BsgI	GTGCAG	1 cut(s)	72
BshFI	GGCC	5 cut(s)	203, 631, 737, 803, 997
BsiHKAI	GWGCWC	1 cut(s)	971
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	341, 938
BsmFI	GGGAC	1 cut(s)	711
BsmI	GAATGC	1 cut(s)	1252
BsnI	GGCC	5 cut(s)	203, 631, 737, 803, 997
Bsp1286I	GDGCHC	4 cut(s)	79, 251, 876, 971
Bsp1407I	TGTACA	1 cut(s)	168
Bsp143I	GATC	3 cut(s)	484, 790, 1090
Bsp1720I	GCTNAGC	1 cut(s)	599
BspACI	CCGC	2 cut(s)	73, 1233
BspANI	GGCC	5 cut(s)	203, 631, 737, 803, 997
BspCNI	CTCAG	5 cut(s)	95, 379, 745, 1089, 1273
BspMAI	CTGCAG	1 cut(s)	830
BspPI	GGATC	2 cut(s)	479, 785
BsrDI	GCAATG	1 cut(s)	632
BsrGI	TGTACA	1 cut(s)	168
BsrI	ACTGG	4 cut(s)	34, 197, 238, 888
BssECI	CCNNGG	2 cut(s)	584, 780
BssMI	GATC	3 cut(s)	484, 790, 1090
BssNI	GRCGYC	1 cut(s)	858
BssT1I	CCWWGG	1 cut(s)	584
Bst2UI	CCWGG	2 cut(s)	852, 899
Bst4CI	ACNGT	2 cut(s)	823, 1219
Bst6I	CTCTTC	1 cut(s)	219
BstACI	GRCGYC	1 cut(s)	858
BstAUI	TGTACA	1 cut(s)	168
BstBAI	YACGTR	1 cut(s)	403
BstC8I	GCNNGC	2 cut(s)	75, 1033
BstF5I	GGATG	4 cut(s)	162, 319, 430, 566
BstKTI	GATC	3 cut(s)	487, 793, 1093
BstMAI	GTCTC	2 cut(s)	341, 938
BstMBI	GATC	3 cut(s)	484, 790, 1090
BstMWI	GCNNNNNNNGC	1 cut(s)	734
BstNI	CCWGG	2 cut(s)	852, 899
BstNSI	RCATGY	3 cut(s)	241, 707, 1134
BstSCI	CCNGG	2 cut(s)	850, 897
BstSFI	CTRYAG	1 cut(s)	826
BstSLI	GKGCMC	1 cut(s)	251
BstV1I	GCAGC	5 cut(s)	65, 523, 715, 840, 1162
BstV2I	GAAGAC	1 cut(s)	1183
Bsu36I	CCTNAGG	1 cut(s)	833
BsuRI	GGCC	5 cut(s)	203, 631, 737, 803, 997
BtsCI	GGATG	4 cut(s)	162, 319, 430, 566
BtsIMutI	CAGTG	1 cut(s)	881
Cac8I	GCNNGC	2 cut(s)	75, 1033
CaiI	CAGNNNCTG	1 cut(s)	536
Cfr13I	GGNCC	3 cut(s)	801, 863, 1219
CseI	GACGC	2 cut(s)	847, 983
Csp6I	GTAC	6 cut(s)	4, 37, 169, 190, 361, 400
CviAII	CATG	6 cut(s)	99, 238, 704, 964, 1131, 1236
CviQI	GTAC	6 cut(s)	4, 37, 169, 190, 361, 400
DpnI	GATC	3 cut(s)	486, 792, 1092
DpnII	GATC	3 cut(s)	484, 790, 1090
DraI	TTTAAA	1 cut(s)	934
Eam1104I	CTCTTC	1 cut(s)	219
EarI	CTCTTC	1 cut(s)	219
Eco130I	CCWWGG	1 cut(s)	584
Eco24I	GRGCYC	2 cut(s)	79, 876
Eco47I	GGWCC	2 cut(s)	863, 1219
Eco81I	CCTNAGG	1 cut(s)	833
EcoRII	CCWGG	2 cut(s)	850, 897
EcoT14I	CCWWGG	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	1136
EcoT38I	GRGCYC	2 cut(s)	79, 876
ErhI	CCWWGG	1 cut(s)	584
FaeI	CATG	6 cut(s)	102, 241, 707, 967, 1134, 1239
FalI	AAGNNNNNCTT	2 cut(s)	464, 496
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	6 cut(s)	98, 237, 703, 963, 1130, 1235
FauI	CCCGC	1 cut(s)	66
FbaI	TGATCA	1 cut(s)	1090
Fnu4HI	GCNGC	5 cut(s)	54, 537, 729, 829, 1176
FokI	GGATG	4 cut(s)	169, 326, 437, 573
FriOI	GRGCYC	2 cut(s)	79, 876
Fsp4HI	GCNGC	5 cut(s)	54, 537, 729, 829, 1176
FspBI	CTAG	2 cut(s)	351, 1160
GluI	GCNGC	5 cut(s)	54, 537, 729, 829, 1176
GsaI	CCCAGC	2 cut(s)	438, 520
GsuI	CTGGAG	3 cut(s)	588, 920, 1140
HaeIII	GGCC	5 cut(s)	203, 631, 737, 803, 997
HgaI	GACGC	2 cut(s)	847, 983
Hin1I	GRCGYC	1 cut(s)	858
Hin1II	CATG	6 cut(s)	102, 241, 707, 967, 1134, 1239
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HinfI	GANTC	1 cut(s)	527
HpaI	GTTAAC	1 cut(s)	1168
HphI	GGTGA	4 cut(s)	208, 320, 346, 1129
Hpy166II	GTNNAC	4 cut(s)	292, 670, 909, 1168
Hpy188I	TCNGA	7 cut(s)	532, 576, 607, 844, 973, 1115, 1282
Hpy188III	TCNNGA	5 cut(s)	227, 386, 877, 1078, 1222
Hpy8I	GTNNAC	4 cut(s)	292, 670, 909, 1168
Hpy99I	CGWCG	2 cut(s)	743, 863
HpyAV	CCTTC	4 cut(s)	193, 325, 498, 763
HpyCH4III	ACNGT	2 cut(s)	823, 1219
HpyCH4IV	ACGT	3 cut(s)	402, 741, 846
HpyCH4V	TGCA	5 cut(s)	53, 98, 625, 828, 1134
HpyF10VI	GCNNNNNNNGC	1 cut(s)	734
HpySE526I	ACGT	3 cut(s)	402, 741, 846
Hsp92I	GRCGYC	1 cut(s)	858
Hsp92II	CATG	6 cut(s)	102, 241, 707, 967, 1134, 1239
Ksp22I	TGATCA	1 cut(s)	1090
KspAI	GTTAAC	1 cut(s)	1168
Kzo9I	GATC	3 cut(s)	484, 790, 1090
LmnI	GCTCC	4 cut(s)	229, 608, 1115, 1255
Lsp1109I	GCAGC	5 cut(s)	65, 523, 715, 840, 1162
LweI	GCATC	5 cut(s)	523, 598, 802, 1143, 1162
MaeI	CTAG	2 cut(s)	351, 1160
MaeII	ACGT	3 cut(s)	402, 741, 846
MaeIII	GTNAC	2 cut(s)	748, 1213
MalI	GATC	3 cut(s)	486, 792, 1092
MboI	GATC	3 cut(s)	484, 790, 1090
MboII	GAAGA	5 cut(s)	206, 910, 978, 1078, 1183
MhlI	GDGCHC	4 cut(s)	79, 251, 876, 971
MluCI	AATT	4 cut(s)	579, 641, 796, 1276
MlyI	GAGTC	1 cut(s)	536
Mph1103I	ATGCAT	1 cut(s)	1136
MseI	TTAA	4 cut(s)	933, 1002, 1167, 1274
MspR9I	CCNGG	2 cut(s)	852, 899
Mva1269I	GAATGC	1 cut(s)	1252
MvaI	CCWGG	2 cut(s)	852, 899
MwoI	GCNNNNNNNGC	1 cut(s)	734
NdeII	GATC	3 cut(s)	484, 790, 1090
NlaIII	CATG	6 cut(s)	102, 241, 707, 967, 1134, 1239
NmeAIII	GCCGAG	1 cut(s)	805
NsiI	ATGCAT	1 cut(s)	1136
NspI	RCATGY	3 cut(s)	241, 707, 1134
PctI	GAATGC	1 cut(s)	1252
PkrI	GCNGC	5 cut(s)	55, 538, 730, 830, 1177
PleI	GAGTC	1 cut(s)	535
PpsI	GAGTC	1 cut(s)	535
Ppu21I	YACGTR	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	850, 897
PspFI	CCCAGC	2 cut(s)	434, 516
PspGI	CCWGG	2 cut(s)	850, 897
PspPI	GGNCC	3 cut(s)	801, 863, 1219
PstI	CTGCAG	1 cut(s)	830
PstNI	CAGNNNCTG	1 cut(s)	536
RsaI	GTAC	6 cut(s)	5, 38, 170, 191, 362, 401
RsaNI	GTAC	6 cut(s)	4, 37, 169, 190, 361, 400
SaqAI	TTAA	4 cut(s)	933, 1002, 1167, 1274
SatI	GCNGC	5 cut(s)	54, 537, 729, 829, 1176
Sau3AI	GATC	3 cut(s)	484, 790, 1090
Sau96I	GGNCC	3 cut(s)	801, 863, 1219
ScaI	AGTACT	2 cut(s)	191, 362
SchI	GAGTC	1 cut(s)	536
ScrFI	CCNGG	2 cut(s)	852, 899
SduI	GDGCHC	4 cut(s)	79, 251, 876, 971
SfaNI	GCATC	5 cut(s)	523, 598, 802, 1143, 1162
SfcI	CTRYAG	1 cut(s)	826
SinI	GGWCC	2 cut(s)	863, 1219
SmlI	CTYRAG	1 cut(s)	1141
SmoI	CTYRAG	1 cut(s)	1141
Sse9I	AATT	4 cut(s)	579, 641, 796, 1276
SsiI	CCGC	2 cut(s)	73, 1233
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	2 cut(s)	351, 1160
StyD4I	CCNGG	2 cut(s)	850, 897
StyI	CCWWGG	1 cut(s)	584
TaaI	ACNGT	2 cut(s)	823, 1219
TaiI	ACGT	3 cut(s)	405, 744, 849
TaqI	TCGA	2 cut(s)	430, 810
TaqII	GACCGA	1 cut(s)	851
TasI	AATT	4 cut(s)	579, 641, 796, 1276
TatI	WGTACW	5 cut(s)	3, 36, 168, 189, 360
Tru1I	TTAA	4 cut(s)	933, 1002, 1167, 1274
Tru9I	TTAA	4 cut(s)	933, 1002, 1167, 1274
TscAI	CASTG	1 cut(s)	888
TseI	GCWGC	5 cut(s)	53, 536, 728, 828, 1175
TspDTI	ATGAA	3 cut(s)	978, 1020, 1277
TspRI	CASTG	1 cut(s)	888
VpaK11BI	GGWCC	2 cut(s)	863, 1219
XapI	RAATTY	1 cut(s)	1276
XceI	RCATGY	3 cut(s)	241, 707, 1134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XspI	CTAG	2 cut(s)	351, 1160
ZrmI	AGTACT	2 cut(s)	191, 362
Zsp2I	ATGCAT	1 cut(s)	1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.