Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8415991.1

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

366 .. 1211

Gene Structure 846 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8415991.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ctgttgattaatgggcaggcaattccacgacagatctggctcagtcctgatgggaagcaagtgctacaatggcctatccaagaagtggaaactttgagggggcaaaagattgacataacaaatcaacttctagaaaagggaaagccttttgaagttcgttcaataactgctgcacaggccgatgttgaagttaccttcaccattccgagcgtggacaaagctgaggagtatgatcctacctggcgggatgcggaaacggcgtgtgcggcaaagcgttcgaatgttccaggtggtgttgggccattcggactcttgacattggcctctcaaaacctagaggagttcactcccgtcttctttaggattatcaaaataaaagagcaaaagtacaaggttcttatgtgctctgacgcaaagttttcaactttgaagccgttcgatgagaaacagtatagaccatcgtttgccggcttagtagatgtagatatagccgccgaaaagaagatttccctcaggactttgattgatcattctgctgttgaaagttttggggcaggaggaagaacatgcatcttatctagggtttatccgaccctagctgtaaacgatgcagctcacttgtttttgttcaacaatggcaccgagccaattactgttcagactctcactgcttggagtatgaatgctcctaaggccatgaaccagggcgaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

238

Amino Acids

26.38

Weight (kDa)

6.23

Isoelectric Point (pI)

30.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	638
AccB7I	CCANNNNNTGG	1 cut(s)	85
AciI	CCGC	4 cut(s)	244, 251, 266, 492
AclWI	GGATC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	85
AgsI	TTSAA	7 cut(s)	152, 162, 188, 423, 430, 542, 631
AjnI	CCWGG	3 cut(s)	239, 286, 702
AluBI	AGCT	3 cut(s)	221, 599, 614
AluI	AGCT	3 cut(s)	221, 599, 614
Alw21I	GWGCWC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	227
AoxI	GGCC	5 cut(s)	71, 177, 299, 321, 693
ApeKI	GCWGC	2 cut(s)	170, 611
AseI	ATTAAT	1 cut(s)	9
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	1 cut(s)	190
AsuII	TTCGAA	1 cut(s)	278
AxyI	CCTNAGG	2 cut(s)	512, 690
BanI	GGYRCC	1 cut(s)	638
BbsI	GAAGAC	1 cut(s)	346
Bbv12I	GWGCWC	1 cut(s)	407
BbvCI	CCTCAGC	1 cut(s)	222
BbvI	GCAGC	2 cut(s)	157, 623
BccI	CCATC	2 cut(s)	44, 466
BceAI	ACGGC	2 cut(s)	273, 418
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BciT130I	CCWGG	3 cut(s)	241, 288, 704
BclI	TGATCA	1 cut(s)	526
BfaI	CTAG	4 cut(s)	131, 335, 579, 596
BglII	AGATCT	1 cut(s)	33
BisI	GCNGC	4 cut(s)	171, 267, 492, 612
BlsI	GCNGC	4 cut(s)	172, 268, 493, 613
Bme1390I	CCNGG	3 cut(s)	241, 288, 704
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	1 cut(s)	640
BmrFI	CCNGG	3 cut(s)	241, 288, 704
BmsI	GCATC	3 cut(s)	238, 579, 598
BpiI	GAAGAC	1 cut(s)	346
Bpu10I	CCTNAGC	1 cut(s)	222
Bpu14I	TTCGAA	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	703
Bsc4I	CCNNNNNNNGG	1 cut(s)	85
Bse118I	RCCGGY	1 cut(s)	467
Bse21I	CCTNAGG	2 cut(s)	512, 690
BseBI	CCWGG	3 cut(s)	241, 288, 704
BseDI	CCNNGG	1 cut(s)	703
BseGI	GGATG	1 cut(s)	253
BseLI	CCNNNNNNNGG	1 cut(s)	85
BseMII	CTCAG	3 cut(s)	55, 213, 526
BseRI	GAGGAG	2 cut(s)	239, 353
BseXI	GCAGC	2 cut(s)	157, 623
BsgI	GTGCAG	1 cut(s)	156
BshFI	GGCC	5 cut(s)	73, 179, 301, 323, 695
BshNI	GGYRCC	1 cut(s)	638
BsiHKAI	GWGCWC	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	468
BslI	CCNNNNNNNGG	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	688
BsnI	GGCC	5 cut(s)	73, 179, 301, 323, 695
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	407
Bsp143I	GATC	3 cut(s)	33, 232, 526
BspACI	CCGC	4 cut(s)	244, 251, 266, 492
BspANI	GGCC	5 cut(s)	73, 179, 301, 323, 695
BspCNI	CTCAG	3 cut(s)	54, 214, 525
BspLI	GGNNCC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	227
BspT104I	TTCGAA	1 cut(s)	278
BspT107I	GGYRCC	1 cut(s)	638
BsrFI	RCCGGY	1 cut(s)	467
BssAI	RCCGGY	1 cut(s)	467
BssECI	CCNNGG	1 cut(s)	703
BssMI	GATC	3 cut(s)	33, 232, 526
Bst2UI	CCWGG	3 cut(s)	241, 288, 704
Bst4CI	ACNGT	2 cut(s)	450, 655
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	18, 469
BstDEI	CTNAG	5 cut(s)	41, 222, 472, 512, 690
BstF5I	GGATG	1 cut(s)	253
BstKTI	GATC	3 cut(s)	36, 235, 529
BstMBI	GATC	3 cut(s)	33, 232, 526
BstMWI	GCNNNNNNNGC	5 cut(s)	70, 176, 257, 266, 692
BstNI	CCWGG	3 cut(s)	241, 288, 704
BstNSI	RCATGY	1 cut(s)	570
BstSCI	CCNGG	3 cut(s)	239, 286, 702
BstV1I	GCAGC	2 cut(s)	157, 623
BstV2I	GAAGAC	1 cut(s)	346
BstX2I	RGATCY	1 cut(s)	33
BstYI	RGATCY	1 cut(s)	33
Bsu36I	CCTNAGG	2 cut(s)	512, 690
BsuRI	GGCC	5 cut(s)	73, 179, 301, 323, 695
BtsCI	GGATG	1 cut(s)	253
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	18, 469
Cfr10I	RCCGGY	1 cut(s)	467
Cfr13I	GGNCC	1 cut(s)	299
CseI	GACGC	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	567, 697
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	5 cut(s)	41, 222, 472, 512, 690
DpnI	GATC	3 cut(s)	35, 234, 528
DpnII	GATC	3 cut(s)	33, 232, 526
Eco81I	CCTNAGG	2 cut(s)	512, 690
EcoRII	CCWGG	3 cut(s)	239, 286, 702
EcoT22I	ATGCAT	1 cut(s)	572
FaeI	CATG	2 cut(s)	570, 700
FaiI	YATR	8 cut(s)	116, 231, 401, 453, 488, 568, 680, 698
FatI	CATG	2 cut(s)	566, 696
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	1 cut(s)	526
Fnu4HI	GCNGC	4 cut(s)	171, 267, 492, 612
FokI	GGATG	1 cut(s)	260
Fsp4HI	GCNGC	4 cut(s)	171, 267, 492, 612
FspBI	CTAG	4 cut(s)	131, 335, 579, 596
GluI	GCNGC	4 cut(s)	171, 267, 492, 612
HaeIII	GGCC	5 cut(s)	73, 179, 301, 323, 695
HapII	CCGG	1 cut(s)	468
HgaI	GACGC	1 cut(s)	419
Hin1II	CATG	2 cut(s)	570, 700
HinfI	GANTC	2 cut(s)	309, 661
HpaII	CCGG	1 cut(s)	468
HphI	GGTGA	1 cut(s)	190
Hpy166II	GTNNAC	3 cut(s)	214, 345, 604
Hpy188I	TCNGA	5 cut(s)	207, 308, 409, 591, 660
Hpy188III	TCNNGA	4 cut(s)	47, 131, 313, 514
Hpy8I	GTNNAC	3 cut(s)	214, 345, 604
HpyAV	CCTTC	1 cut(s)	205
HpyCH4III	ACNGT	2 cut(s)	450, 655
HpyCH4V	TGCA	3 cut(s)	173, 570, 611
HpyF10VI	GCNNNNNNNGC	5 cut(s)	70, 176, 257, 266, 692
HpyF3I	CTNAG	5 cut(s)	41, 222, 472, 512, 690
Hsp92II	CATG	2 cut(s)	570, 700
KroI	GCCGGC	1 cut(s)	467
KroNI	GCCGGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	526
Kzo9I	GATC	3 cut(s)	33, 232, 526
LmnI	GCTCC	1 cut(s)	691
Lsp1109I	GCAGC	2 cut(s)	157, 623
LweI	GCATC	3 cut(s)	238, 579, 598
MaeI	CTAG	4 cut(s)	131, 335, 579, 596
MaeIII	GTNAC	1 cut(s)	190
MalI	GATC	3 cut(s)	35, 234, 528
MboI	GATC	3 cut(s)	33, 232, 526
MboII	GAAGA	3 cut(s)	346, 514, 573
MflI	RGATCY	1 cut(s)	33
MhlI	GDGCHC	1 cut(s)	407
MluCI	AATT	2 cut(s)	21, 648
MlyI	GAGTC	2 cut(s)	303, 655
MmeI	TCCRAC	1 cut(s)	614
MnlI	CCTC	6 cut(s)	90, 217, 331, 334, 521, 551
Mph1103I	ATGCAT	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	467
MroXI	GAANNNNTTC	1 cut(s)	434
MseI	TTAA	1 cut(s)	9
MspI	CCGG	1 cut(s)	468
MspR9I	CCNGG	3 cut(s)	241, 288, 704
Mva1269I	GAATGC	1 cut(s)	688
MvaI	CCWGG	3 cut(s)	241, 288, 704
MwoI	GCNNNNNNNGC	5 cut(s)	70, 176, 257, 266, 692
NaeI	GCCGGC	1 cut(s)	469
NdeII	GATC	3 cut(s)	33, 232, 526
NgoMIV	GCCGGC	1 cut(s)	467
NlaIII	CATG	2 cut(s)	570, 700
NlaIV	GGNNCC	1 cut(s)	640
NsiI	ATGCAT	1 cut(s)	572
NspI	RCATGY	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	278
PctI	GAATGC	1 cut(s)	688
PdiI	GCCGGC	1 cut(s)	469
PdmI	GAANNNNTTC	1 cut(s)	434
PflMI	CCANNNNNTGG	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	172, 268, 493, 613
PleI	GAGTC	2 cut(s)	303, 655
PpsI	GAGTC	2 cut(s)	303, 655
PshBI	ATTAAT	1 cut(s)	9
Psp6I	CCWGG	3 cut(s)	239, 286, 702
PspGI	CCWGG	3 cut(s)	239, 286, 702
PspN4I	GGNNCC	1 cut(s)	640
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	1 cut(s)	33
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	4 cut(s)	171, 267, 492, 612
Sau3AI	GATC	3 cut(s)	33, 232, 526
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	303, 655
ScrFI	CCNGG	3 cut(s)	241, 288, 704
SduI	GDGCHC	1 cut(s)	407
SetI	ASST	8 cut(s)	197, 223, 242, 292, 336, 396, 601, 616
SfaNI	GCATC	3 cut(s)	238, 579, 598
SfuI	TTCGAA	1 cut(s)	278
Sse9I	AATT	2 cut(s)	21, 648
SsiI	CCGC	4 cut(s)	244, 251, 266, 492
SspMI	CTAG	4 cut(s)	131, 335, 579, 596
StyD4I	CCNGG	3 cut(s)	239, 286, 702
TaaI	ACNGT	2 cut(s)	450, 655
TaqI	TCGA	2 cut(s)	278, 438
TasI	AATT	2 cut(s)	21, 648
TatI	WGTACW	1 cut(s)	387
TauI	GCSGC	2 cut(s)	269, 494
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	2 cut(s)	170, 611
TspDTI	ATGAA	2 cut(s)	695, 713
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	9
XbaI	TCTAGA	1 cut(s)	130
XceI	RCATGY	1 cut(s)	570
XcmI	CCANNNNNNNNNTGG	2 cut(s)	33, 208
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	4 cut(s)	131, 335, 579, 596
Zsp2I	ATGCAT	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.