Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Forward (+)

11547308 .. 11548104

Gene Structure 797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0140400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAAAATGACTAATATACGATCCATATTAAATGAATATGGCCTGTCTGATGAGAATCATGAGATGGAGAGGAAAATCATGCTTGCGGTAAGAGATAAACTTAAAGAAGATGACAATCATATTGTGGAGAATATGTTTTCAATTCTTTCCTTAGGAGACGCTGAAATTTTAGCTATGGAGATCAAATGCAATCTATTCATGGATAAGCTAAAGCAAGTCGATGGGCTTAAAGATAAAGGGGAAGAAGTTCTGAAAAAAATCTGTGAGCATCTTAAGCCAATGATCTACAGTAAGGGATGCTACATTATTCGAGAGGGGGAGCCACTTGATATGATGTTTTTCGTCACACGGGGCAGTGTACTCACCTATGCGACAAATAATGGTAGATCAAATGGTTCTTTAGGTACTATCCAACTTGAGAAAGAGAAAGATGGTTTGAATGGTCAAGAGCTTCTAACTTGGGCAGAAGAGCCTTCTAGCAAATTGTCCAACTTACCGATCTCTGCCATAACCGTCAAGTCCCACAACAAGGTTGAAGTCTTTGCTCTCCAGGCCACCGATTTACAGCTTGTTGTCTCTAAATTCCCAAGTCAATTCAATATGGACAGTACTCTCACCATAGCTGTCGATAATGAAATCGTGAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

215

Amino Acids

24.26

Weight (kDa)

5.13

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	86
AclWI	GGATC	1 cut(s)	15
AcsI	RAATTY	2 cut(s)	165, 581
AfaI	GTAC	3 cut(s)	360, 406, 610
AfiI	CCNNNNNNNGG	1 cut(s)	529
AflII	CTTAAG	1 cut(s)	272
AgsI	TTSAA	4 cut(s)	141, 439, 536, 598
AjnI	CCWGG	1 cut(s)	549
AluBI	AGCT	5 cut(s)	173, 208, 451, 568, 623
AluI	AGCT	5 cut(s)	173, 208, 451, 568, 623
Alw26I	GTCTC	2 cut(s)	150, 580
AlwI	GGATC	1 cut(s)	15
AoxI	GGCC	2 cut(s)	40, 552
ApoI	RAATTY	2 cut(s)	165, 581
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	355, 607
AxyI	CCTNAGG	1 cut(s)	151
BccI	CCATC	3 cut(s)	58, 215, 425
BciT130I	CCWGG	1 cut(s)	551
BcoDI	GTCTC	2 cut(s)	150, 580
BfaI	CTAG	1 cut(s)	477
BfmI	CTRYAG	1 cut(s)	286
BfrI	CTTAAG	1 cut(s)	272
BmcAI	AGTACT	1 cut(s)	610
Bme1390I	CCNGG	1 cut(s)	551
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	1 cut(s)	551
BmsI	GCATC	2 cut(s)	277, 287
BpmI	CTGGAG	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	437
BsaBI	GATNNNNATC	2 cut(s)	54, 114
BsaXI	ACNNNNNCTCC	2 cut(s)	119, 149
Bsc4I	CCNNNNNNNGG	1 cut(s)	529
Bse21I	CCTNAGG	1 cut(s)	151
Bse8I	GATNNNNATC	2 cut(s)	54, 114
BseBI	CCWGG	1 cut(s)	551
BseGI	GGATG	1 cut(s)	302
BseJI	GATNNNNATC	2 cut(s)	54, 114
BseLI	CCNNNNNNNGG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	42, 554
BslFI	GGGAC	1 cut(s)	505
BslI	CCNNNNNNNGG	1 cut(s)	529
BsmAI	GTCTC	2 cut(s)	150, 580
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	1 cut(s)	505
BsnI	GGCC	2 cut(s)	42, 554
Bsp143I	GATC	5 cut(s)	20, 180, 282, 386, 498
BspACI	CCGC	1 cut(s)	86
BspANI	GGCC	2 cut(s)	42, 554
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	321
BspPI	GGATC	1 cut(s)	15
BspQI	GCTCTTC	1 cut(s)	462
BspTI	CTTAAG	1 cut(s)	272
BssMI	GATC	5 cut(s)	20, 180, 282, 386, 498
Bst2UI	CCWGG	1 cut(s)	551
Bst4CI	ACNGT	3 cut(s)	290, 514, 608
Bst6I	CTCTTC	1 cut(s)	462
BstAFI	CTTAAG	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	84
BstDEI	CTNAG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	5 cut(s)	23, 183, 285, 389, 501
BstMAI	GTCTC	2 cut(s)	150, 580
BstMBI	GATC	5 cut(s)	20, 180, 282, 386, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	274, 551
BstNI	CCWGG	1 cut(s)	551
BstSCI	CCNGG	1 cut(s)	549
BstSFI	CTRYAG	1 cut(s)	286
Bsu36I	CCTNAGG	1 cut(s)	151
BsuRI	GGCC	2 cut(s)	42, 554
BtsCI	GGATG	1 cut(s)	302
BtsI	GCAGTG	1 cut(s)	361
BtsIMutI	CAGTG	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	84
CciI	TCATGA	1 cut(s)	58
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	359, 405, 609
CviAII	CATG	3 cut(s)	59, 79, 199
CviQI	GTAC	3 cut(s)	359, 405, 609
DdeI	CTNAG	1 cut(s)	151
DpnI	GATC	5 cut(s)	22, 182, 284, 388, 500
DpnII	GATC	5 cut(s)	20, 180, 282, 386, 498
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco81I	CCTNAGG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	549
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	3 cut(s)	62, 82, 202
FaqI	GGGAC	1 cut(s)	505
FatI	CATG	3 cut(s)	58, 78, 198
FokI	GGATG	1 cut(s)	309
FspBI	CTAG	1 cut(s)	477
GsuI	CTGGAG	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	42, 554
HgaI	GACGC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	62, 82, 202
HinfI	GANTC	1 cut(s)	55
HphI	GGTGA	2 cut(s)	355, 607
Hpy166II	GTNNAC	1 cut(s)	359
Hpy188I	TCNGA	2 cut(s)	49, 252
Hpy188III	TCNNGA	4 cut(s)	59, 311, 446, 640
Hpy8I	GTNNAC	1 cut(s)	359
HpyAV	CCTTC	1 cut(s)	483
HpyCH4III	ACNGT	3 cut(s)	290, 514, 608
HpyCH4V	TGCA	1 cut(s)	189
HpyF10VI	GCNNNNNNNGC	2 cut(s)	274, 551
HpyF3I	CTNAG	1 cut(s)	151
Hsp92II	CATG	3 cut(s)	62, 82, 202
Kzo9I	GATC	5 cut(s)	20, 180, 282, 386, 498
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	1 cut(s)	319
LpnPI	CCDG	3 cut(s)	56, 536, 563
LweI	GCATC	2 cut(s)	277, 287
MaeI	CTAG	1 cut(s)	477
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	5 cut(s)	22, 182, 284, 388, 500
MboI	GATC	5 cut(s)	20, 180, 282, 386, 498
MboII	GAAGA	3 cut(s)	119, 254, 479
MluCI	AATT	6 cut(s)	141, 165, 482, 581, 593, 643
MmeI	TCCRAC	2 cut(s)	436, 513
MnlI	CCTC	2 cut(s)	63, 307
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	5 cut(s)	29, 102, 228, 273, 646
MspCI	CTTAAG	1 cut(s)	272
MspR9I	CCNGG	1 cut(s)	551
MvaI	CCWGG	1 cut(s)	551
MwoI	GCNNNNNNNGC	2 cut(s)	274, 551
NdeII	GATC	5 cut(s)	20, 180, 282, 386, 498
NlaIII	CATG	3 cut(s)	62, 82, 202
NlaIV	GGNNCC	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	343
PagI	TCATGA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	462
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	55
Psp6I	CCWGG	1 cut(s)	549
PspGI	CCWGG	1 cut(s)	549
PspN4I	GGNNCC	1 cut(s)	321
RsaI	GTAC	3 cut(s)	360, 406, 610
RsaNI	GTAC	3 cut(s)	359, 405, 609
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	5 cut(s)	29, 102, 228, 273, 646
Sau3AI	GATC	5 cut(s)	20, 180, 282, 386, 498
ScaI	AGTACT	1 cut(s)	610
ScrFI	CCNGG	1 cut(s)	551
SetI	ASST	8 cut(s)	175, 210, 368, 406, 453, 534, 570, 625
SfaNI	GCATC	2 cut(s)	277, 287
SfcI	CTRYAG	1 cut(s)	286
SmlI	CTYRAG	2 cut(s)	272, 416
SmoI	CTYRAG	2 cut(s)	272, 416
Sse9I	AATT	6 cut(s)	141, 165, 482, 581, 593, 643
SsiI	CCGC	1 cut(s)	86
SspMI	CTAG	1 cut(s)	477
StyD4I	CCNGG	1 cut(s)	549
TaaI	ACNGT	3 cut(s)	290, 514, 608
TaqI	TCGA	3 cut(s)	219, 310, 627
TasI	AATT	6 cut(s)	141, 165, 482, 581, 593, 643
TatI	WGTACW	2 cut(s)	358, 608
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	5 cut(s)	29, 102, 228, 273, 646
Tru9I	TTAA	5 cut(s)	29, 102, 228, 273, 646
TscAI	CASTG	1 cut(s)	361
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	4 cut(s)	17, 48, 187, 648
TspRI	CASTG	1 cut(s)	361
Vha464I	CTTAAG	1 cut(s)	272
XapI	RAATTY	2 cut(s)	165, 581
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	477
ZrmI	AGTACT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.