Rroxscaffold_6G00407310

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
29999046 .. 30001147
2102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407310.1

Sequence Viewer

Length: 1263 bp
ATGGATCAAACCAGACAACAACCCGTTGGTGGTGCCCTCCCCCCTGAAATGAACGTCAGCCAGTTCCGCGACCCCACCACCGCCTGGTGGTACAACGGCCACTGGAGGATGGCGGTAGGAGGAAAGAGAGGGCAGCGCGGCATGGCGTATCTGTACCGGAGCATGGACTTTAAGTTCTGGGTCAAGAGCAAGCACCCGCTCCATTCGGCTGAGAACACCGGCATGTGGGAGTGCCCGGACTTTTTCCCGTTGTATAAGAATGGGAACAAGCAGGGAGCGGACACCTCGAGAGTTGGGCCGGATGTGAAGCACGCGTTCAAGGTGAGCCTGGATGAGACGAGGTATGAGTACTACACACTGGGGACGTATAAGCCACAAGATGACTCGTACAAAGTGGATCCGAGAATGCTGGACAGTCGGGACGGGTTGAGATATGATTATGGCAACTTTTATGCGTCCAAAACTTTCTTTGATCCTGTGAAGGGTAGAAGGATTTTGTGGGGTTGGGCTAATGAGTCTGATTCAGCTGACGAAGATACGGAAAAGGGGTGGGCTGGAATTCAGGCAATTCCACGACAGATCTGGCTCAGTCCTGATGGGAAGCAAGTGCTACAATGGCCTATCCAAGAAGTGGAAACTTTGAGGGGGCAAAAGATTGACATAACAAATCAACTTCTAGAAAAGGGAAAGCCTTTTGAAGTTCGTTCAATAACTGCTGCACAGGCCGATGTTGAAGTTACCTTCACCATTCCGAGCGTGGACAAAGCTGAGGAGTATGATCCTACCTGGCGGGATGCGGAAACGGCGTGTGCGGCAAAGCGTTCGAATGTTCCAGGTGGTGTTGGGCCATTCGGACTCTTGACATTGGCCTCTCAAAACCTAGAGGAGTTCACTCCCGTCTTCTTTAGGATTATCAAAATAAAAGAGCAAAAGTACAAGGTTCTCATGTGCTCTGACGCAAAGTTTTCAACTTTGAAGCCGTTCGATGAGAAACAGTATAGACCATCATTTGCCGGCTTAGTAGATGTAGATATAGCCGCCGAAAAGAAGATTTCCCTCAGGACTTTGATTGATCATTCTGCTGTTGAAAGTTTTGGAGCAGGAGGAAGAACATGCATCTTATCTAGGGTTTATCCGACCCTAGCTGTAAACGATGCAGCTCACTTGTTTTTGTTCAACAATGGCACCGAGCCAATTACTGTTCAGACTCTCACTGCTTGGAGTATGAATGCTCCTAAGGCCATGAACCAGGGCGAAAAATGA

Protein Analysis

420

Amino Acids

47.58

Weight (kDa)

7.02

Isoelectric Point (pI)

31.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 6 - 207 8.6e-51 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 210 - 408 2.2e-23 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 32, 1184
AccB7I CCANNNNNTGG 2 cut(s) 84, 631
AccBSI CCGCTC 2 cut(s) 199, 278
AccII CGCG 3 cut(s) 69, 138, 314
AclWI GGATC 5 cut(s) 12, 392, 405, 467, 773
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 558
AfaI GTAC 5 cut(s) 92, 155, 350, 389, 935
AfiI CCNNNNNNNGG 7 cut(s) 29, 84, 87, 163, 225, 482, 631
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 8 cut(s) 319, 698, 708, 734, 969, 976, 1088, 1177
AjnI CCWGG 5 cut(s) 83, 327, 785, 832, 1248
AloI GAACNNNNNNTCC 2 cut(s) 158, 190
AluBI AGCT 4 cut(s) 527, 767, 1145, 1160
AluI AGCT 4 cut(s) 527, 767, 1145, 1160
Alw21I GWGCWC 1 cut(s) 953
Alw26I GTCTC 1 cut(s) 329
AlwI GGATC 5 cut(s) 12, 392, 405, 467, 773
Ama87I CYCGRG 1 cut(s) 286
AoxI GGCC 7 cut(s) 97, 296, 617, 723, 845, 867, 1239
ApeKI GCWGC 3 cut(s) 133, 716, 1157
ApoI RAATTY 1 cut(s) 558
Asp700I GAANNNNTTC 1 cut(s) 980
AspLEI GCGC 1 cut(s) 138
AspS9I GGNCC 2 cut(s) 296, 845
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 334, 736
AsuII TTCGAA 1 cut(s) 824
AvaI CYCGRG 1 cut(s) 286
AxyI CCTNAGG 2 cut(s) 1058, 1236
BaeGI GKGCMC 2 cut(s) 37, 236
BamHI GGATCC 1 cut(s) 397
BanI GGYRCC 2 cut(s) 32, 1184
BbsI GAAGAC 1 cut(s) 892
Bbv12I GWGCWC 1 cut(s) 953
BbvCI CCTCAGC 1 cut(s) 768
BbvI GCAGC 3 cut(s) 145, 703, 1169
BccI CCATC 3 cut(s) 103, 590, 1012
BceAI ACGGC 3 cut(s) 112, 819, 964
BcgI CGANNNNNNTGC 2 cut(s) 804, 838
BciT130I CCWGG 5 cut(s) 85, 329, 787, 834, 1250
BclI TGATCA 1 cut(s) 1072
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 329
BfaI CTAG 4 cut(s) 677, 881, 1125, 1142
BglII AGATCT 1 cut(s) 579
BisI GCNGC 6 cut(s) 134, 139, 717, 813, 1038, 1158
BlsI GCNGC 6 cut(s) 135, 140, 718, 814, 1039, 1159
BmcAI AGTACT 1 cut(s) 350
Bme1390I CCNGG 6 cut(s) 85, 236, 329, 787, 834, 1250
BmeT110I CYCGRG 1 cut(s) 286
BmgT120I GGNCC 2 cut(s) 296, 845
BmiI GGNNCC 3 cut(s) 34, 399, 1186
BmrFI CCNGG 6 cut(s) 85, 236, 329, 787, 834, 1250
BmrI ACTGGG 1 cut(s) 368
BmsI GCATC 3 cut(s) 784, 1125, 1144
BmuI ACTGGG 1 cut(s) 368
BpiI GAAGAC 1 cut(s) 892
BpmI CTGGAG 1 cut(s) 124
Bpu10I CCTNAGC 1 cut(s) 768
Bpu14I TTCGAA 1 cut(s) 824
BpuMI CCSGG 1 cut(s) 236
BsaJI CCNNGG 1 cut(s) 1249
BsaWI WCCGGW 1 cut(s) 156
Bsc4I CCNNNNNNNGG 7 cut(s) 29, 84, 87, 163, 225, 482, 631
Bse118I RCCGGY 2 cut(s) 218, 1013
Bse1I ACTGG 3 cut(s) 61, 107, 363
Bse21I CCTNAGG 2 cut(s) 1058, 1236
BseBI CCWGG 5 cut(s) 85, 329, 787, 834, 1250
BseDI CCNNGG 1 cut(s) 1249
BseGI GGATG 4 cut(s) 114, 307, 337, 799
BseLI CCNNNNNNNGG 7 cut(s) 29, 84, 87, 163, 225, 482, 631
BseMII CTCAG 4 cut(s) 201, 601, 759, 1072
BseNI ACTGG 3 cut(s) 61, 107, 363
BseRI GAGGAG 2 cut(s) 785, 899
BseSI GKGCMC 2 cut(s) 37, 236
BseXI GCAGC 3 cut(s) 145, 703, 1169
BsgI GTGCAG 1 cut(s) 702
Bsh1236I CGCG 3 cut(s) 69, 138, 314
BshFI GGCC 7 cut(s) 99, 298, 619, 725, 847, 869, 1241
BshNI GGYRCC 2 cut(s) 32, 1184
BsiHKAI GWGCWC 1 cut(s) 953
BsiHKCI CYCGRG 1 cut(s) 286
BsiSI CCGG 5 cut(s) 157, 219, 236, 299, 1014
BslFI GGGAC 2 cut(s) 376, 434
BslI CCNNNNNNNGG 7 cut(s) 29, 84, 87, 163, 225, 482, 631
BsmAI GTCTC 1 cut(s) 329
BsmBI CGTCTC 1 cut(s) 329
BsmFI GGGAC 2 cut(s) 376, 434
BsmI GAATGC 2 cut(s) 411, 1234
BsnI GGCC 7 cut(s) 99, 298, 619, 725, 847, 869, 1241
BsoBI CYCGRG 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 824
Bsp1286I GDGCHC 3 cut(s) 37, 236, 953
Bsp143I GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
BspANI GGCC 7 cut(s) 99, 298, 619, 725, 847, 869, 1241
BspCNI CTCAG 4 cut(s) 202, 600, 760, 1071
BspFNI CGCG 3 cut(s) 69, 138, 314
BspLI GGNNCC 3 cut(s) 34, 399, 1186
BspPI GGATC 5 cut(s) 12, 392, 405, 467, 773
BspT104I TTCGAA 1 cut(s) 824
BspT107I GGYRCC 2 cut(s) 32, 1184
BsrBI CCGCTC 2 cut(s) 199, 278
BsrFI RCCGGY 2 cut(s) 218, 1013
BsrI ACTGG 3 cut(s) 61, 107, 363
BssAI RCCGGY 2 cut(s) 218, 1013
BssECI CCNNGG 1 cut(s) 1249
BssMI GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
Bst2UI CCWGG 5 cut(s) 85, 329, 787, 834, 1250
Bst4CI ACNGT 3 cut(s) 416, 996, 1201
BstBI TTCGAA 1 cut(s) 824
BstC8I GCNNGC 3 cut(s) 191, 312, 1015
BstDEI CTNAG 6 cut(s) 210, 587, 768, 1018, 1058, 1236
BstF5I GGATG 4 cut(s) 114, 307, 337, 799
BstFNI CGCG 3 cut(s) 69, 138, 314
BstHHI GCGC 1 cut(s) 138
BstKTI GATC 6 cut(s) 7, 400, 475, 582, 781, 1075
BstMAI GTCTC 1 cut(s) 329
BstMBI GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
BstMWI GCNNNNNNNGC 6 cut(s) 66, 616, 722, 803, 812, 1238
BstNI CCWGG 5 cut(s) 85, 329, 787, 834, 1250
BstNSI RCATGY 2 cut(s) 226, 1116
BstSCI CCNGG 6 cut(s) 83, 234, 327, 785, 832, 1248
BstSLI GKGCMC 2 cut(s) 37, 236
BstUI CGCG 3 cut(s) 69, 138, 314
BstV1I GCAGC 3 cut(s) 145, 703, 1169
BstV2I GAAGAC 1 cut(s) 892
BstX2I RGATCY 2 cut(s) 397, 579
BstYI RGATCY 2 cut(s) 397, 579
Bsu36I CCTNAGG 2 cut(s) 1058, 1236
BsuRI GGCC 7 cut(s) 99, 298, 619, 725, 847, 869, 1241
BtsCI GGATG 4 cut(s) 114, 307, 337, 799
BtsI GCAGTG 1 cut(s) 1212
BtsIMutI CAGTG 3 cut(s) 100, 356, 1212
Cac8I GCNNGC 3 cut(s) 191, 312, 1015
CfoI GCGC 1 cut(s) 138
Cfr10I RCCGGY 2 cut(s) 218, 1013
Cfr13I GGNCC 2 cut(s) 296, 845
CseI GACGC 2 cut(s) 444, 965
Csp6I GTAC 5 cut(s) 91, 154, 349, 388, 934
CviAII CATG 6 cut(s) 142, 163, 223, 946, 1113, 1243
CviQI GTAC 5 cut(s) 91, 154, 349, 388, 934
DdeI CTNAG 6 cut(s) 210, 587, 768, 1018, 1058, 1236
DpnI GATC 6 cut(s) 6, 399, 474, 581, 780, 1074
DpnII GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
EaeI YGGCCR 1 cut(s) 97
Eco81I CCTNAGG 2 cut(s) 1058, 1236
Eco88I CYCGRG 1 cut(s) 286
EcoRI GAATTC 1 cut(s) 558
EcoRII CCWGG 5 cut(s) 83, 327, 785, 832, 1248
EcoT22I ATGCAT 1 cut(s) 1118
Esp3I CGTCTC 1 cut(s) 329
FaeI CATG 6 cut(s) 145, 166, 226, 949, 1116, 1246
FaqI GGGAC 2 cut(s) 376, 434
FatI CATG 6 cut(s) 141, 162, 222, 945, 1112, 1242
FauI CCCGC 2 cut(s) 204, 783
FbaI TGATCA 1 cut(s) 1072
Fnu4HI GCNGC 6 cut(s) 134, 139, 717, 813, 1038, 1158
FokI GGATG 4 cut(s) 121, 314, 344, 806
Fsp4HI GCNGC 6 cut(s) 134, 139, 717, 813, 1038, 1158
FspBI CTAG 4 cut(s) 677, 881, 1125, 1142
GlaI GCGC 1 cut(s) 137
GluI GCNGC 6 cut(s) 134, 139, 717, 813, 1038, 1158
GsuI CTGGAG 1 cut(s) 124
HaeIII GGCC 7 cut(s) 99, 298, 619, 725, 847, 869, 1241
HapII CCGG 5 cut(s) 157, 219, 236, 299, 1014
HgaI GACGC 2 cut(s) 444, 965
HhaI GCGC 1 cut(s) 138
Hin1II CATG 6 cut(s) 145, 166, 226, 949, 1116, 1246
Hin6I GCGC 1 cut(s) 136
HinP1I GCGC 1 cut(s) 136
HinfI GANTC 5 cut(s) 383, 515, 521, 855, 1207
HpaII CCGG 5 cut(s) 157, 219, 236, 299, 1014
HphI GGTGA 2 cut(s) 334, 736
Hpy166II GTNNAC 3 cut(s) 760, 891, 1150
Hpy188I TCNGA 7 cut(s) 402, 520, 753, 854, 955, 1137, 1206
Hpy188III TCNNGA 7 cut(s) 184, 288, 419, 593, 677, 859, 1060
Hpy8I GTNNAC 3 cut(s) 760, 891, 1150
HpyAV CCTTC 3 cut(s) 475, 483, 751
HpyCH4III ACNGT 3 cut(s) 416, 996, 1201
HpyCH4IV ACGT 2 cut(s) 54, 365
HpyCH4V TGCA 3 cut(s) 719, 1116, 1157
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 616, 722, 803, 812, 1238
HpyF3I CTNAG 6 cut(s) 210, 587, 768, 1018, 1058, 1236
HpySE526I ACGT 2 cut(s) 54, 365
Hsp92II CATG 6 cut(s) 145, 166, 226, 949, 1116, 1246
HspAI GCGC 1 cut(s) 136
KroI GCCGGC 1 cut(s) 1013
KroNI GCCGGC 1 cut(s) 1015
Ksp22I TGATCA 1 cut(s) 1072
Kzo9I GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
LmnI GCTCC 5 cut(s) 159, 204, 275, 1097, 1237
Lsp1109I GCAGC 3 cut(s) 145, 703, 1169
LweI GCATC 3 cut(s) 784, 1125, 1144
MaeI CTAG 4 cut(s) 677, 881, 1125, 1142
MaeII ACGT 2 cut(s) 54, 365
MaeIII GTNAC 1 cut(s) 736
MalI GATC 6 cut(s) 6, 399, 474, 581, 780, 1074
MbiI CCGCTC 2 cut(s) 199, 278
MboI GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
MboII GAAGA 4 cut(s) 545, 892, 1060, 1119
MflI RGATCY 2 cut(s) 397, 579
MhlI GDGCHC 3 cut(s) 37, 236, 953
MluCI AATT 3 cut(s) 558, 567, 1194
MluI ACGCGT 1 cut(s) 312
MlyI GAGTC 4 cut(s) 377, 524, 849, 1201
MmeI TCCRAC 1 cut(s) 1160
Mph1103I ATGCAT 1 cut(s) 1118
MroNI GCCGGC 1 cut(s) 1013
MroXI GAANNNNTTC 1 cut(s) 980
MseI TTAA 1 cut(s) 171
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 527
MspI CCGG 5 cut(s) 157, 219, 236, 299, 1014
MspR9I CCNGG 6 cut(s) 85, 236, 329, 787, 834, 1250
Mva1269I GAATGC 2 cut(s) 411, 1234
MvaI CCWGG 5 cut(s) 85, 329, 787, 834, 1250
MvnI CGCG 3 cut(s) 69, 138, 314
MwoI GCNNNNNNNGC 6 cut(s) 66, 616, 722, 803, 812, 1238
NaeI GCCGGC 1 cut(s) 1015
NciI CCSGG 1 cut(s) 236
NdeII GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
NgoMIV GCCGGC 1 cut(s) 1013
NlaIII CATG 6 cut(s) 145, 166, 226, 949, 1116, 1246
NlaIV GGNNCC 3 cut(s) 34, 399, 1186
NsiI ATGCAT 1 cut(s) 1118
NspI RCATGY 2 cut(s) 226, 1116
NspV TTCGAA 1 cut(s) 824
PaeR7I CTCGAG 1 cut(s) 286
PctI GAATGC 2 cut(s) 411, 1234
PdiI GCCGGC 1 cut(s) 1015
PdmI GAANNNNTTC 1 cut(s) 980
PfeI GAWTC 1 cut(s) 521
PflMI CCANNNNNTGG 2 cut(s) 84, 631
PkrI GCNGC 6 cut(s) 135, 140, 718, 814, 1039, 1159
PleI GAGTC 4 cut(s) 377, 523, 849, 1201
PpsI GAGTC 4 cut(s) 377, 523, 849, 1201
Psp6I CCWGG 5 cut(s) 83, 327, 785, 832, 1248
PspGI CCWGG 5 cut(s) 83, 327, 785, 832, 1248
PspN4I GGNNCC 3 cut(s) 34, 399, 1186
PspPI GGNCC 2 cut(s) 296, 845
PsuI RGATCY 2 cut(s) 397, 579
PvuII CAGCTG 1 cut(s) 527
RsaI GTAC 5 cut(s) 92, 155, 350, 389, 935
RsaNI GTAC 5 cut(s) 91, 154, 349, 388, 934
RseI CAYNNNNRTG 1 cut(s) 221
SaqAI TTAA 1 cut(s) 171
SatI GCNGC 6 cut(s) 134, 139, 717, 813, 1038, 1158
Sau3AI GATC 6 cut(s) 4, 397, 472, 579, 778, 1072
Sau96I GGNCC 2 cut(s) 296, 845
ScaI AGTACT 1 cut(s) 350
SchI GAGTC 4 cut(s) 377, 524, 849, 1201
ScrFI CCNGG 6 cut(s) 85, 236, 329, 787, 834, 1250
SduI GDGCHC 3 cut(s) 37, 236, 953
SfaNI GCATC 3 cut(s) 784, 1125, 1144
Sfr274I CTCGAG 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 824
SlaI CTCGAG 1 cut(s) 286
SmiMI CAYNNNNRTG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 286
SmoI CTYRAG 1 cut(s) 286
Sse9I AATT 3 cut(s) 558, 567, 1194
SspMI CTAG 4 cut(s) 677, 881, 1125, 1142
StyD4I CCNGG 6 cut(s) 83, 234, 327, 785, 832, 1248
TaaI ACNGT 3 cut(s) 416, 996, 1201
TaiI ACGT 2 cut(s) 57, 368
TaqI TCGA 3 cut(s) 287, 824, 984
TasI AATT 3 cut(s) 558, 567, 1194
TatI WGTACW 2 cut(s) 348, 933
TauI GCSGC 3 cut(s) 141, 815, 1040
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TscAI CASTG 3 cut(s) 107, 363, 1219
TseI GCWGC 3 cut(s) 133, 716, 1157
TspDTI ATGAA 3 cut(s) 65, 1241, 1259
TspGWI ACGGA 1 cut(s) 554
TspRI CASTG 3 cut(s) 107, 363, 1219
Van91I CCANNNNNTGG 2 cut(s) 84, 631
XapI RAATTY 1 cut(s) 558
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 2 cut(s) 226, 1116
XcmI CCANNNNNNNNNTGG 2 cut(s) 579, 754
XhoI CTCGAG 1 cut(s) 286
XmnI GAANNNNTTC 1 cut(s) 980
XspI CTAG 4 cut(s) 677, 881, 1125, 1142
ZrmI AGTACT 1 cut(s) 350
Zsp2I ATGCAT 1 cut(s) 1118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.