Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8444851.1

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

385 .. 1488

Gene Structure 1104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8444851.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

atgcaggcaatcccaaggactgtgtggctgagtcctgatgggaaacaattgttacaatggcctgttgaagaattggaaactttaaggggacaaaaggtccagatgaagaatcaaaatctcaaagtgggagatcatgttgaagttaaaggaatacatgctgctcaggccgatgttgaaattattttctctttcaagagctcggacaaagcagagaagtttgaccctaaatggtcaaaccttgatgcccaagcaatatgtgggctaacgggttcaaaaattggaggtggcatcggcccatttgggctattgactttggcttcacaaaacctagaggaattcactcctgtcttctttagggtgttcaaaactcaaggcaataagtataaggttctcctgtgctctgatgcaagaagttcctctttgcaggataatctgtacaaaccaccatttgctggttttgtagatgtagatttatctgataagaagctctccctcaggagtttgattgatcattctgttgttgagagttttggagatggaggaaaaacatgcataacttctagggtttaccccactctggctgttgacaataaagctcacttgtatgtgttcaacaatgggactgaggctgtcactattgagagtctcgatgcgtggactatgaatgctcctaagttgatgaaccaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

229

Amino Acids

25.3

Weight (kDa)

6.43

Isoelectric Point (pI)

29.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AcsI	RAATTY	1 cut(s)	335
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	452, 577
AgsI	TTSAA	7 cut(s)	68, 140, 176, 193, 273, 364, 613
AhdI	GACNNNNNGTC	1 cut(s)	95
AluBI	AGCT	3 cut(s)	198, 487, 596
AluI	AGCT	3 cut(s)	198, 487, 596
Alw21I	GWGCWC	2 cut(s)	200, 401
Alw26I	GTCTC	1 cut(s)	650
AoxI	GGCC	3 cut(s)	59, 165, 292
ApeKI	GCWGC	1 cut(s)	158
ApoI	RAATTY	1 cut(s)	335
AspS9I	GGNCC	2 cut(s)	97, 293
AvaII	GGWCC	1 cut(s)	97
AxyI	CCTNAGG	1 cut(s)	494
BanII	GRGCYC	1 cut(s)	200
BbsI	GAAGAC	1 cut(s)	340
Bbv12I	GWGCWC	2 cut(s)	200, 401
BbvI	GCAGC	1 cut(s)	145
BccI	CCATC	2 cut(s)	32, 530
BclI	TGATCA	1 cut(s)	508
BcoDI	GTCTC	1 cut(s)	650
BfaI	CTAG	2 cut(s)	329, 561
BisI	GCNGC	1 cut(s)	159
BlsI	GCNGC	1 cut(s)	160
Bme18I	GGWCC	1 cut(s)	97
BmeRI	GACNNNNNGTC	1 cut(s)	95
BmgT120I	GGNCC	2 cut(s)	97, 293
BmsI	GCATC	4 cut(s)	232, 297, 394, 640
BpiI	GAAGAC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	14
BsaXI	ACNNNNNCTCC	2 cut(s)	120, 150
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 577
Bse21I	CCTNAGG	1 cut(s)	494
BseDI	CCNNGG	1 cut(s)	14
BseLI	CCNNNNNNNGG	2 cut(s)	452, 577
BseMII	CTCAG	4 cut(s)	20, 176, 508, 615
BseXI	GCAGC	1 cut(s)	145
BshFI	GGCC	3 cut(s)	61, 167, 294
BsiHKAI	GWGCWC	2 cut(s)	200, 401
BslFI	GGGAC	2 cut(s)	102, 634
BslI	CCNNNNNNNGG	2 cut(s)	452, 577
BsmAI	GTCTC	1 cut(s)	650
BsmFI	GGGAC	2 cut(s)	102, 634
BsmI	GAATGC	1 cut(s)	670
BsnI	GGCC	3 cut(s)	61, 167, 294
Bsp1286I	GDGCHC	2 cut(s)	200, 401
Bsp1407I	TGTACA	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	130, 508
BspANI	GGCC	3 cut(s)	61, 167, 294
BspCNI	CTCAG	4 cut(s)	21, 175, 507, 616
BsrGI	TGTACA	1 cut(s)	435
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	2 cut(s)	130, 508
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	22
BstAUI	TGTACA	1 cut(s)	435
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	5 cut(s)	29, 162, 494, 624, 672
BstKTI	GATC	2 cut(s)	133, 511
BstMAI	GTCTC	1 cut(s)	650
BstMBI	GATC	2 cut(s)	130, 508
BstMWI	GCNNNNNNNGC	1 cut(s)	164
BstNSI	RCATGY	2 cut(s)	158, 552
BstV1I	GCAGC	1 cut(s)	145
BstV2I	GAAGAC	1 cut(s)	340
Bsu36I	CCTNAGG	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	61, 167, 294
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	2 cut(s)	97, 293
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	3 cut(s)	134, 155, 549
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	5 cut(s)	29, 162, 494, 624, 672
DpnI	GATC	2 cut(s)	132, 510
DpnII	GATC	2 cut(s)	130, 508
DriI	GACNNNNNGTC	1 cut(s)	95
Eam1105I	GACNNNNNGTC	1 cut(s)	95
Ecl136II	GAGCTC	1 cut(s)	198
Eco130I	CCWWGG	1 cut(s)	14
Eco24I	GRGCYC	1 cut(s)	200
Eco47I	GGWCC	1 cut(s)	97
Eco53kI	GAGCTC	1 cut(s)	198
Eco81I	CCTNAGG	1 cut(s)	494
EcoICRI	GAGCTC	1 cut(s)	198
EcoRI	GAATTC	1 cut(s)	335
EcoT14I	CCWWGG	1 cut(s)	14
EcoT22I	ATGCAT	1 cut(s)	554
EcoT38I	GRGCYC	1 cut(s)	200
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	3 cut(s)	137, 158, 552
FaiI	YATR	8 cut(s)	135, 156, 256, 384, 550, 554, 606, 662
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	2 cut(s)	102, 634
FatI	CATG	3 cut(s)	133, 154, 548
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	159
FriOI	GRGCYC	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	159
FspBI	CTAG	2 cut(s)	329, 561
GluI	GCNGC	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	61, 167, 294
Hin1II	CATG	3 cut(s)	137, 158, 552
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HinfI	GANTC	3 cut(s)	31, 109, 643
Hpy166II	GTNNAC	3 cut(s)	568, 586, 657
Hpy188I	TCNGA	3 cut(s)	202, 403, 478
Hpy188III	TCNNGA	5 cut(s)	35, 100, 193, 496, 647
Hpy8I	GTNNAC	3 cut(s)	568, 586, 657
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	4 cut(s)	4, 407, 424, 552
HpyF10VI	GCNNNNNNNGC	1 cut(s)	164
HpyF3I	CTNAG	5 cut(s)	29, 162, 494, 624, 672
Hsp92II	CATG	3 cut(s)	137, 158, 552
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	2 cut(s)	130, 508
LmnI	GCTCC	1 cut(s)	673
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	4 cut(s)	232, 297, 394, 640
MaeI	CTAG	2 cut(s)	329, 561
MaeIII	GTNAC	2 cut(s)	51, 631
MalI	GATC	2 cut(s)	132, 510
MboI	GATC	2 cut(s)	130, 508
MboII	GAAGA	3 cut(s)	80, 118, 340
MfeI	CAATTG	1 cut(s)	47
MhlI	GDGCHC	2 cut(s)	200, 401
MluCI	AATT	5 cut(s)	47, 71, 177, 276, 335
MlyI	GAGTC	2 cut(s)	40, 652
MnlI	CCTC	6 cut(s)	275, 325, 427, 503, 533, 619
Mph1103I	ATGCAT	1 cut(s)	554
MseI	TTAA	2 cut(s)	83, 144
MslI	CAYNNNNRTG	1 cut(s)	603
MunI	CAATTG	1 cut(s)	47
Mva1269I	GAATGC	1 cut(s)	670
MwoI	GCNNNNNNNGC	1 cut(s)	164
NdeII	GATC	2 cut(s)	130, 508
NlaIII	CATG	3 cut(s)	137, 158, 552
NmuCI	GTSAC	1 cut(s)	631
NsiI	ATGCAT	1 cut(s)	554
NspI	RCATGY	2 cut(s)	158, 552
PctI	GAATGC	1 cut(s)	670
PfeI	GAWTC	1 cut(s)	109
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	1 cut(s)	160
PleI	GAGTC	2 cut(s)	39, 651
PpsI	GAGTC	2 cut(s)	39, 651
Psp124BI	GAGCTC	1 cut(s)	200
PspPI	GGNCC	2 cut(s)	97, 293
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	603
SacI	GAGCTC	1 cut(s)	200
SaqAI	TTAA	2 cut(s)	83, 144
SatI	GCNGC	1 cut(s)	159
Sau3AI	GATC	2 cut(s)	130, 508
Sau96I	GGNCC	2 cut(s)	97, 293
SchI	GAGTC	2 cut(s)	40, 652
SduI	GDGCHC	2 cut(s)	200, 401
SetI	ASST	8 cut(s)	99, 200, 240, 286, 330, 390, 489, 598
SfaNI	GCATC	4 cut(s)	232, 297, 394, 640
SinI	GGWCC	1 cut(s)	97
SmiMI	CAYNNNNRTG	1 cut(s)	603
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	5 cut(s)	47, 71, 177, 276, 335
SspMI	CTAG	2 cut(s)	329, 561
SstI	GAGCTC	1 cut(s)	200
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	648
TasI	AATT	5 cut(s)	47, 71, 177, 276, 335
TatI	WGTACW	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	109
Tru1I	TTAA	2 cut(s)	83, 144
Tru9I	TTAA	2 cut(s)	83, 144
TseFI	GTSAC	1 cut(s)	631
TseI	GCWGC	1 cut(s)	158
Tsp45I	GTSAC	1 cut(s)	631
TspDTI	ATGAA	2 cut(s)	119, 677
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	97
XapI	RAATTY	1 cut(s)	335
XceI	RCATGY	2 cut(s)	158, 552
XcmI	CCANNNNNNNNNTGG	2 cut(s)	21, 254
XspI	CTAG	2 cut(s)	329, 561
Zsp2I	ATGCAT	1 cut(s)	554

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.