Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8392863.1

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

167 .. 1039

Gene Structure 873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8392863.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

atgtacttcaacggggtgtaccacttattctaccaatacaatcccaaaggatctgtgtggggaaacatcgtgtgggcgcactccgtctctaaagacctaatcaactgggaagccctagaaccagccatatacccctccaaacccttcgacatgaacggttgctggtccggatccgccaccatcctcccaggcaacaagcccgtcatcctctacaccggcctcgacccggaaaagcgccaggtccagaactacgccatccccaaagacgacaccgacccctacctccgcgaatggatcaaaccagacaacaacccgttggtggtgccctccccggaaatgaacgtcagccagttccgcgaccccaccacagcctggtggtacaacggccactggaggatggcggtaggaggaaagagagggcagcgaggcatggcgtatctgtaccggagcatggactttaagttctgggtcaagagcaagcacccgctccattcggctgagaacaccggcatgtgggagtgcccggactttttcccgttgtataagaatgggaacaagcagggagcggacacctcgagagttgggccggatgtgaagcacgcgttcaaggtgagcctggatgagacgaggtatgagtactacacactagggacgtataagccggaagatgactcgtacaaagtggatccgagaatgctggacagtcgggacgggttgagatatgattatggcaacttttatgcgtccaaaactttctttgatcctgtgaagggtagaaggattttgtggggttgggctaatgagtctgattcagctgacgaagatacggaaaaggggtgggccggaattcaggtacgagaatttaagatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

290

Amino Acids

33.73

Weight (kDa)

6.61

Isoelectric Point (pI)

30.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	322
AccB7I	CCANNNNNTGG	1 cut(s)	372
AccBSI	CCGCTC	2 cut(s)	487, 566
AccII	CGCG	3 cut(s)	288, 357, 602
AccIII	TCCGGA	1 cut(s)	167
AciI	CCGC	6 cut(s)	174, 286, 355, 401, 485, 566
AclWI	GGATC	7 cut(s)	58, 165, 178, 302, 680, 693, 755
AcoI	YGGCCR	1 cut(s)	385
AcsI	RAATTY	2 cut(s)	846, 860
AfaI	GTAC	7 cut(s)	5, 20, 380, 443, 638, 677, 855
AfiI	CCNNNNNNNGG	6 cut(s)	226, 319, 372, 451, 513, 770
AflIII	ACRYGT	1 cut(s)	600
AgsI	TTSAA	2 cut(s)	10, 607
AjnI	CCWGG	4 cut(s)	187, 237, 371, 615
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	1 cut(s)	815
AluI	AGCT	1 cut(s)	815
Alw26I	GTCTC	2 cut(s)	91, 617
AlwI	GGATC	7 cut(s)	58, 165, 178, 302, 680, 693, 755
Ama87I	CYCGRG	1 cut(s)	574
Aor13HI	TCCGGA	1 cut(s)	167
AoxI	GGCC	4 cut(s)	217, 385, 584, 840
ApeKI	GCWGC	1 cut(s)	421
ApoI	RAATTY	2 cut(s)	846, 860
AspLEI	GCGC	2 cut(s)	79, 237
AspS9I	GGNCC	4 cut(s)	165, 241, 584, 840
AsuC2I	CCSGG	3 cut(s)	227, 332, 524
AsuHPI	GGTGA	1 cut(s)	622
AvaI	CYCGRG	1 cut(s)	574
AvaII	GGWCC	2 cut(s)	165, 241
BaeGI	GKGCMC	2 cut(s)	327, 524
BamHI	GGATCC	2 cut(s)	170, 685
BanI	GGYRCC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	433
BccI	CCATC	3 cut(s)	188, 263, 391
BceAI	ACGGC	1 cut(s)	400
BciT130I	CCWGG	4 cut(s)	189, 239, 373, 617
BcnI	CCSGG	3 cut(s)	227, 332, 524
BcoDI	GTCTC	2 cut(s)	91, 617
BfaI	CTAG	2 cut(s)	116, 647
BfoI	RGCGCY	1 cut(s)	238
BisI	GCNGC	1 cut(s)	422
BlsI	GCNGC	1 cut(s)	423
BmcAI	AGTACT	1 cut(s)	638
Bme1390I	CCNGG	7 cut(s)	189, 227, 239, 332, 373, 524, 617
Bme18I	GGWCC	2 cut(s)	165, 241
BmeT110I	CYCGRG	1 cut(s)	574
BmgT120I	GGNCC	4 cut(s)	165, 241, 584, 840
BmiI	GGNNCC	3 cut(s)	172, 324, 687
BmrFI	CCNGG	7 cut(s)	189, 227, 239, 332, 373, 524, 617
BmrI	ACTGGG	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	115
BpmI	CTGGAG	1 cut(s)	412
BpuMI	CCSGG	3 cut(s)	227, 332, 524
BsaJI	CCNNGG	2 cut(s)	187, 330
BsaWI	WCCGGW	2 cut(s)	167, 444
Bsc4I	CCNNNNNNNGG	6 cut(s)	226, 319, 372, 451, 513, 770
Bse118I	RCCGGY	2 cut(s)	215, 506
Bse1I	ACTGG	3 cut(s)	110, 349, 395
BseAI	TCCGGA	1 cut(s)	167
BseBI	CCWGG	4 cut(s)	189, 239, 373, 617
BseDI	CCNNGG	2 cut(s)	187, 330
BseGI	GGATG	6 cut(s)	180, 204, 255, 402, 595, 625
BseLI	CCNNNNNNNGG	6 cut(s)	226, 319, 372, 451, 513, 770
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	110, 349, 395
BseSI	GKGCMC	2 cut(s)	327, 524
BseXI	GCAGC	1 cut(s)	433
Bsh1236I	CGCG	3 cut(s)	288, 357, 602
BshFI	GGCC	4 cut(s)	219, 387, 586, 842
BshNI	GGYRCC	1 cut(s)	322
BsiHKCI	CYCGRG	1 cut(s)	574
BslFI	GGGAC	2 cut(s)	664, 722
BslI	CCNNNNNNNGG	6 cut(s)	226, 319, 372, 451, 513, 770
BsmAI	GTCTC	2 cut(s)	91, 617
BsmBI	CGTCTC	2 cut(s)	91, 617
BsmFI	GGGAC	2 cut(s)	664, 722
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	219, 387, 586, 842
BsoBI	CYCGRG	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	327, 524
Bsp13I	TCCGGA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	50, 170, 294, 685, 760
BspACI	CCGC	6 cut(s)	174, 286, 355, 401, 485, 566
BspANI	GGCC	4 cut(s)	219, 387, 586, 842
BspCNI	CTCAG	1 cut(s)	490
BspEI	TCCGGA	1 cut(s)	167
BspFNI	CGCG	3 cut(s)	288, 357, 602
BspLI	GGNNCC	3 cut(s)	172, 324, 687
BspPI	GGATC	7 cut(s)	58, 165, 178, 302, 680, 693, 755
BspT107I	GGYRCC	1 cut(s)	322
BsrBI	CCGCTC	2 cut(s)	487, 566
BsrFI	RCCGGY	2 cut(s)	215, 506
BsrI	ACTGG	3 cut(s)	110, 349, 395
BssAI	RCCGGY	2 cut(s)	215, 506
BssECI	CCNNGG	2 cut(s)	187, 330
BssMI	GATC	5 cut(s)	50, 170, 294, 685, 760
Bst2UI	CCWGG	4 cut(s)	189, 239, 373, 617
Bst4CI	ACNGT	2 cut(s)	158, 704
BstC8I	GCNNGC	2 cut(s)	479, 600
BstDEI	CTNAG	1 cut(s)	498
BstF5I	GGATG	6 cut(s)	180, 204, 255, 402, 595, 625
BstFNI	CGCG	3 cut(s)	288, 357, 602
BstH2I	RGCGCY	1 cut(s)	238
BstHHI	GCGC	2 cut(s)	79, 237
BstKTI	GATC	5 cut(s)	53, 173, 297, 688, 763
BstMAI	GTCTC	2 cut(s)	91, 617
BstMBI	GATC	5 cut(s)	50, 170, 294, 685, 760
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstNI	CCWGG	4 cut(s)	189, 239, 373, 617
BstNSI	RCATGY	1 cut(s)	514
BstSCI	CCNGG	7 cut(s)	187, 225, 237, 330, 371, 522, 615
BstSLI	GKGCMC	2 cut(s)	327, 524
BstUI	CGCG	3 cut(s)	288, 357, 602
BstV1I	GCAGC	1 cut(s)	433
BstX2I	RGATCY	3 cut(s)	50, 170, 685
BstYI	RGATCY	3 cut(s)	50, 170, 685
BsuRI	GGCC	4 cut(s)	219, 387, 586, 842
BtsCI	GGATG	6 cut(s)	180, 204, 255, 402, 595, 625
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	2 cut(s)	479, 600
CfoI	GCGC	2 cut(s)	79, 237
Cfr10I	RCCGGY	2 cut(s)	215, 506
Cfr13I	GGNCC	4 cut(s)	165, 241, 584, 840
CseI	GACGC	1 cut(s)	732
Csp6I	GTAC	7 cut(s)	4, 19, 379, 442, 637, 676, 854
CviAII	CATG	4 cut(s)	151, 430, 451, 511
CviQI	GTAC	7 cut(s)	4, 19, 379, 442, 637, 676, 854
DdeI	CTNAG	1 cut(s)	498
DpnI	GATC	5 cut(s)	52, 172, 296, 687, 762
DpnII	GATC	5 cut(s)	50, 170, 294, 685, 760
EaeI	YGGCCR	1 cut(s)	385
EciI	GGCGGA	1 cut(s)	163
Eco47I	GGWCC	2 cut(s)	165, 241
Eco88I	CYCGRG	1 cut(s)	574
EcoRI	GAATTC	1 cut(s)	846
EcoRII	CCWGG	4 cut(s)	187, 237, 371, 615
Esp3I	CGTCTC	2 cut(s)	91, 617
FaeI	CATG	4 cut(s)	154, 433, 454, 514
FaqI	GGGAC	2 cut(s)	664, 722
FatI	CATG	4 cut(s)	150, 429, 450, 510
FauI	CCCGC	1 cut(s)	492
Fnu4HI	GCNGC	1 cut(s)	422
FokI	GGATG	6 cut(s)	167, 191, 242, 409, 602, 632
Fsp4HI	GCNGC	1 cut(s)	422
FspBI	CTAG	2 cut(s)	116, 647
GlaI	GCGC	2 cut(s)	78, 236
GluI	GCNGC	1 cut(s)	422
GsuI	CTGGAG	1 cut(s)	412
HaeII	RGCGCY	1 cut(s)	238
HaeIII	GGCC	4 cut(s)	219, 387, 586, 842
HgaI	GACGC	1 cut(s)	732
HhaI	GCGC	2 cut(s)	79, 237
Hin1II	CATG	4 cut(s)	154, 433, 454, 514
Hin6I	GCGC	2 cut(s)	77, 235
HinP1I	GCGC	2 cut(s)	77, 235
HinfI	GANTC	3 cut(s)	671, 803, 809
HphI	GGTGA	1 cut(s)	622
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	690, 808
Hpy188III	TCNNGA	5 cut(s)	168, 244, 472, 576, 707
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	3 cut(s)	154, 763, 771
HpyCH4III	ACNGT	2 cut(s)	158, 704
HpyCH4IV	ACGT	2 cut(s)	342, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpyF3I	CTNAG	1 cut(s)	498
HpySE526I	ACGT	2 cut(s)	342, 653
Hsp92II	CATG	4 cut(s)	154, 433, 454, 514
HspAI	GCGC	2 cut(s)	77, 235
Kpn2I	TCCGGA	1 cut(s)	167
Kzo9I	GATC	5 cut(s)	50, 170, 294, 685, 760
LmnI	GCTCC	3 cut(s)	447, 492, 563
Lsp1109I	GCAGC	1 cut(s)	433
MaeI	CTAG	2 cut(s)	116, 647
MaeII	ACGT	2 cut(s)	342, 653
MalI	GATC	5 cut(s)	52, 172, 296, 687, 762
MbiI	CCGCTC	2 cut(s)	487, 566
MboI	GATC	5 cut(s)	50, 170, 294, 685, 760
MboII	GAAGA	2 cut(s)	677, 833
MflI	RGATCY	3 cut(s)	50, 170, 685
MhlI	GDGCHC	2 cut(s)	327, 524
MluCI	AATT	2 cut(s)	846, 860
MluI	ACGCGT	1 cut(s)	600
MlyI	GAGTC	2 cut(s)	665, 812
MroI	TCCGGA	1 cut(s)	167
MseI	TTAA	2 cut(s)	459, 864
MslI	CAYNNNNRTG	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	815
MspR9I	CCNGG	7 cut(s)	189, 227, 239, 332, 373, 524, 617
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	4 cut(s)	189, 239, 373, 617
MvnI	CGCG	3 cut(s)	288, 357, 602
MwoI	GCNNNNNNNGC	1 cut(s)	354
NciI	CCSGG	3 cut(s)	227, 332, 524
NdeII	GATC	5 cut(s)	50, 170, 294, 685, 760
NlaIII	CATG	4 cut(s)	154, 433, 454, 514
NlaIV	GGNNCC	3 cut(s)	172, 324, 687
NspI	RCATGY	1 cut(s)	514
PaeR7I	CTCGAG	1 cut(s)	574
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	1 cut(s)	809
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	423
PleI	GAGTC	2 cut(s)	665, 811
PpsI	GAGTC	2 cut(s)	665, 811
Psp6I	CCWGG	4 cut(s)	187, 237, 371, 615
PspGI	CCWGG	4 cut(s)	187, 237, 371, 615
PspN4I	GGNNCC	3 cut(s)	172, 324, 687
PspPI	GGNCC	4 cut(s)	165, 241, 584, 840
PsuI	RGATCY	3 cut(s)	50, 170, 685
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	7 cut(s)	5, 20, 380, 443, 638, 677, 855
RsaNI	GTAC	7 cut(s)	4, 19, 379, 442, 637, 676, 854
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	2 cut(s)	459, 864
SatI	GCNGC	1 cut(s)	422
Sau3AI	GATC	5 cut(s)	50, 170, 294, 685, 760
Sau96I	GGNCC	4 cut(s)	165, 241, 584, 840
ScaI	AGTACT	1 cut(s)	638
SchI	GAGTC	2 cut(s)	665, 812
ScrFI	CCNGG	7 cut(s)	189, 227, 239, 332, 373, 524, 617
SduI	GDGCHC	2 cut(s)	327, 524
Sfr274I	CTCGAG	1 cut(s)	574
SinI	GGWCC	2 cut(s)	165, 241
SlaI	CTCGAG	1 cut(s)	574
SmiMI	CAYNNNNRTG	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
Sse9I	AATT	2 cut(s)	846, 860
SsiI	CCGC	6 cut(s)	174, 286, 355, 401, 485, 566
SspMI	CTAG	2 cut(s)	116, 647
StyD4I	CCNGG	7 cut(s)	187, 225, 237, 330, 371, 522, 615
TaaI	ACNGT	2 cut(s)	158, 704
TaiI	ACGT	2 cut(s)	345, 656
TaqI	TCGA	3 cut(s)	147, 222, 575
TasI	AATT	2 cut(s)	846, 860
TatI	WGTACW	2 cut(s)	3, 636
TfiI	GAWTC	1 cut(s)	809
Tru1I	TTAA	2 cut(s)	459, 864
Tru9I	TTAA	2 cut(s)	459, 864
TscAI	CASTG	1 cut(s)	395
TseI	GCWGC	1 cut(s)	421
TspDTI	ATGAA	2 cut(s)	167, 353
TspGWI	ACGGA	2 cut(s)	73, 842
TspRI	CASTG	1 cut(s)	395
Van91I	CCANNNNNTGG	1 cut(s)	372
VpaK11BI	GGWCC	2 cut(s)	165, 241
XapI	RAATTY	2 cut(s)	846, 860
XceI	RCATGY	1 cut(s)	514
XhoI	CTCGAG	1 cut(s)	574
XspI	CTAG	2 cut(s)	116, 647
ZrmI	AGTACT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.