Rroxscaffold_6G00407320

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Reverse (-)
30002661 .. 30005838
3178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00407320.1

Sequence Viewer

Length: 1500 bp
ATGGTCCTATTAGAGATGGCAAAAATCCCCCAGCGGGCGGAGCTCCATTGGATACCCGCCCCTAATGGGGGGAGAATTCGGGGACAAATGGGGAATGGGGATGGGGATCCCCAATCCCCGCTATCTAAGATTGGGGATGGGGCGGGGATGTACAATCCCAAAGGAGCTGTTTGGGGCAACATTGTATGGGCCCATTCAGTCTCTAAGGATCTGATCAATTGGCAAGCCCTTGAACCCGCCATATACCCATCCAAGCCCTTTGACATAAACGGGTGCTGGTCCGGATCCGCCACCCTTCTCCCGGGCAACAAGCCTATCATCCTCTACACCGGACTTGACCCGGAAAAGCGCCAGGTCCAAAACTACGCGGTGCCCGCAAATGTGTCCGACCCATATCTACGCAAATGGGTTAAGCCCGACAACAACCCGCTAGTGGTTCCGGATGCAAGTATGAATGCATCCCAGTTCCGTGACCCGACAACCGCTTGGTGGAGCAATGGGCACTGGAAGATGTTGGTTGGTGGCAAGAGAAAGCATAGAGGGATGGCTCATTTGTATAGGAGCAAGGATTTTGTTTATTGGGTCAAGGCCCAGCACCCGCTTCACTCTGCCCCGAATACGGGTATGTGGGAATGCCCGGATTTTTACCCGGTTTCATTGAAGGGCAAGGCAGGGTTGGACACATCAAAAGATGGTGGGAATGTGAAGCATGTTTTGAAAGTGAGCCTTGATGAGACTAGGTATGACTACTATACTGTTGGAAAATACTTTCCTAAACAAGATAGGTATGTTCCTGATAAGGAATTGGTGGATGGTTGGGCTGGATTGAGATATGATTATGGGAACTTCTATGCTTCCAAAACTTTCTTTGATCCTGCAAAGAATAGAAGAATTTTGTGGGGCTGGGCTAATGAGTCTGATACTCCTAACAATGATGTTGAAAAGGGATGGGCTGGAGTTCAGGCCGATGTTGAAGTTATATTCTCTTTCAAGAGCTTGGACAAAGCAGAGAAGTTTGACCCTAAATGGTCAAACCTTGATGCCCAAGCAATATGTGGACTAACGGGTTCAAAAATTGGAGGTGGCATTGGCCCATTTGGGCTATTGACTTTAGCTTCACAAAACCTAGAGGAATTCACTCCTGTCTTCTTTAGGGTGTTCAAAACTCAAGGCAATAAGCATAAGGTTCTCCTGTGCTCTGATGCAAGAAGTTCCTCTTGGCAGGATAATCTGTACAAACCATCATTTGCTGGTTTTGTAGATGTAGACTTATCTGATAAGAAGCTCTCCCTCAGGAGTTTGATTGATCATTCTGTTGTTGAGAGTTTTGGAGCTGGAGGAAAAACATGCATTACTTCTAGGGTTTACCCCACTCTAGCTGTTGACAATAAAGCTCACTTGTATGTGTTCAACAATGGGACTGAGGCTGTCACTATTGAGAGTCTCGATGCGTGGACTATGAATGCTCCTAAGTTGATGAACCAATATTCCCAGGTCTAG

Protein Analysis

499

Amino Acids

55.64

Weight (kDa)

8.76

Isoelectric Point (pI)

29.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 51 - 322 1.9e-79 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 317 - 485 8.7e-21 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AccI GTMKAC 1 cut(s) 1266
AccII CGCG 1 cut(s) 368
AccIII TCCGGA 2 cut(s) 281, 439
AclWI GGATC 6 cut(s) 101, 114, 216, 279, 292, 866
AcsI RAATTY 3 cut(s) 75, 891, 1133
AfaI GTAC 2 cut(s) 152, 1235
AgsI TTSAA 9 cut(s) 233, 661, 718, 941, 974, 991, 1071, 1162, 1411
AjnI CCWGG 2 cut(s) 351, 1491
AjuI GAANNNNNNNTTGG 2 cut(s) 1201, 1233
AloI GAACNNNNNNTCC 1 cut(s) 1472
AluBI AGCT 8 cut(s) 43, 167, 996, 1115, 1285, 1334, 1379, 1394
AluI AGCT 8 cut(s) 43, 167, 996, 1115, 1285, 1334, 1379, 1394
Alw21I GWGCWC 2 cut(s) 45, 1199
Alw26I GTCTC 3 cut(s) 205, 728, 1448
AlwI GGATC 6 cut(s) 101, 114, 216, 279, 292, 866
Ama87I CYCGRG 1 cut(s) 301
Aor13HI TCCGGA 2 cut(s) 281, 439
AoxI GGCC 4 cut(s) 189, 588, 963, 1090
ApaI GGGCCC 1 cut(s) 193
ApoI RAATTY 3 cut(s) 75, 891, 1133
AspLEI GCGC 1 cut(s) 351
AspS9I GGNCC 7 cut(s) 4, 189, 190, 279, 355, 589, 1091
AsuC2I CCSGG 5 cut(s) 302, 303, 341, 638, 650
AvaI CYCGRG 1 cut(s) 301
AvaII GGWCC 3 cut(s) 4, 279, 355
AxyI CCTNAGG 1 cut(s) 1292
BaeGI GKGCMC 3 cut(s) 193, 375, 504
BamHI GGATCC 2 cut(s) 106, 284
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 2 cut(s) 45, 193
BbsI GAAGAC 1 cut(s) 1138
Bbv12I GWGCWC 2 cut(s) 45, 1199
BccI CCATC 9 cut(s) 10, 95, 131, 256, 538, 686, 806, 942, 1249
BciT130I CCWGG 2 cut(s) 353, 1493
BciVI GTATCC 1 cut(s) 45
BclI TGATCA 2 cut(s) 213, 1306
BcnI CCSGG 5 cut(s) 302, 303, 341, 638, 650
BcoDI GTCTC 3 cut(s) 205, 728, 1448
BfaI CTAG 6 cut(s) 431, 738, 1127, 1359, 1376, 1498
BfoI RGCGCY 1 cut(s) 352
BfuI GTATCC 1 cut(s) 45
Bme1390I CCNGG 7 cut(s) 302, 303, 341, 353, 638, 650, 1493
Bme18I GGWCC 3 cut(s) 4, 279, 355
BmeT110I CYCGRG 1 cut(s) 301
BmgT120I GGNCC 7 cut(s) 4, 189, 190, 279, 355, 589, 1091
BmiI GGNNCC 5 cut(s) 108, 191, 286, 372, 438
BmrFI CCNGG 7 cut(s) 302, 303, 341, 353, 638, 650, 1493
BmrI ACTGGG 1 cut(s) 457
BmsI GCATC 5 cut(s) 433, 467, 1030, 1192, 1438
BmuI ACTGGG 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 1138
BpmI CTGGAG 2 cut(s) 975, 1356
BpuEI CTTGAG 1 cut(s) 1152
BpuMI CCSGG 5 cut(s) 302, 303, 341, 638, 650
BsaBI GATNNNNATC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 301, 1491
BsaWI WCCGGW 3 cut(s) 281, 329, 439
Bse1I ACTGG 2 cut(s) 463, 509
Bse21I CCTNAGG 1 cut(s) 1292
Bse3DI GCAATG 1 cut(s) 502
Bse8I GATNNNNATC 1 cut(s) 105
BseAI TCCGGA 2 cut(s) 281, 439
BseBI CCWGG 2 cut(s) 353, 1493
BseDI CCNNGG 2 cut(s) 301, 1491
BseJI GATNNNNATC 1 cut(s) 105
BseMI GCAATG 1 cut(s) 502
BseMII CTCAG 2 cut(s) 1306, 1413
BseNI ACTGG 2 cut(s) 463, 509
BseSI GKGCMC 3 cut(s) 193, 375, 504
BseYI CCCAGC 3 cut(s) 30, 591, 903
Bsh1236I CGCG 1 cut(s) 368
BshFI GGCC 4 cut(s) 191, 590, 965, 1092
BshNI GGYRCC 1 cut(s) 370
BsiHKAI GWGCWC 2 cut(s) 45, 1199
BsiHKCI CYCGRG 1 cut(s) 301
BsiSI CCGG 7 cut(s) 282, 302, 330, 341, 440, 638, 650
BslFI GGGAC 2 cut(s) 96, 1432
BsmAI GTCTC 3 cut(s) 205, 728, 1448
BsmFI GGGAC 2 cut(s) 96, 1432
BsmI GAATGC 3 cut(s) 460, 638, 1468
BsnI GGCC 4 cut(s) 191, 590, 965, 1092
BsoBI CYCGRG 1 cut(s) 301
Bsp120I GGGCCC 1 cut(s) 189
Bsp1286I GDGCHC 5 cut(s) 45, 193, 375, 504, 1199
Bsp13I TCCGGA 2 cut(s) 281, 439
Bsp1407I TGTACA 2 cut(s) 150, 1233
Bsp143I GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
BspANI GGCC 4 cut(s) 191, 590, 965, 1092
BspCNI CTCAG 2 cut(s) 1305, 1414
BspEI TCCGGA 2 cut(s) 281, 439
BspFNI CGCG 1 cut(s) 368
BspLI GGNNCC 5 cut(s) 108, 191, 286, 372, 438
BspPI GGATC 6 cut(s) 101, 114, 216, 279, 292, 866
BspT107I GGYRCC 1 cut(s) 370
BsrDI GCAATG 1 cut(s) 502
BsrGI TGTACA 2 cut(s) 150, 1233
BsrI ACTGG 2 cut(s) 463, 509
BssECI CCNNGG 2 cut(s) 301, 1491
BssMI GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
Bst2UI CCWGG 2 cut(s) 353, 1493
Bst4CI ACNGT 1 cut(s) 757
BstAUI TGTACA 2 cut(s) 150, 1233
BstC8I GCNNGC 3 cut(s) 36, 225, 375
BstDEI CTNAG 5 cut(s) 126, 204, 1292, 1422, 1470
BstFNI CGCG 1 cut(s) 368
BstH2I RGCGCY 1 cut(s) 352
BstHHI GCGC 1 cut(s) 351
BstKTI GATC 6 cut(s) 109, 211, 216, 287, 874, 1309
BstMAI GTCTC 3 cut(s) 205, 728, 1448
BstMBI GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
BstMWI GCNNNNNNNGC 2 cut(s) 40, 374
BstNI CCWGG 2 cut(s) 353, 1493
BstNSI RCATGY 2 cut(s) 713, 1350
BstSCI CCNGG 7 cut(s) 300, 301, 339, 351, 636, 648, 1491
BstSLI GKGCMC 3 cut(s) 193, 375, 504
BstUI CGCG 1 cut(s) 368
BstV2I GAAGAC 1 cut(s) 1138
BstX2I RGATCY 3 cut(s) 106, 208, 284
BstYI RGATCY 3 cut(s) 106, 208, 284
Bsu36I CCTNAGG 1 cut(s) 1292
BsuI GTATCC 1 cut(s) 45
BsuRI GGCC 4 cut(s) 191, 590, 965, 1092
BtsIMutI CAGTG 1 cut(s) 502
Cac8I GCNNGC 3 cut(s) 36, 225, 375
CfoI GCGC 1 cut(s) 351
Cfr13I GGNCC 7 cut(s) 4, 189, 190, 279, 355, 589, 1091
Cfr9I CCCGGG 1 cut(s) 301
Csp6I GTAC 2 cut(s) 151, 1234
CviAII CATG 2 cut(s) 710, 1347
CviQI GTAC 2 cut(s) 151, 1234
DdeI CTNAG 5 cut(s) 126, 204, 1292, 1422, 1470
DpnI GATC 6 cut(s) 108, 210, 215, 286, 873, 1308
DpnII GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
EciI GGCGGA 2 cut(s) 53, 277
Ecl136II GAGCTC 1 cut(s) 43
Eco24I GRGCYC 2 cut(s) 45, 193
Eco47I GGWCC 3 cut(s) 4, 279, 355
Eco53kI GAGCTC 1 cut(s) 43
Eco81I CCTNAGG 1 cut(s) 1292
Eco88I CYCGRG 1 cut(s) 301
EcoICRI GAGCTC 1 cut(s) 43
EcoRI GAATTC 2 cut(s) 75, 1133
EcoRII CCWGG 2 cut(s) 351, 1491
EcoT22I ATGCAT 2 cut(s) 460, 1352
EcoT38I GRGCYC 2 cut(s) 45, 193
FaeI CATG 2 cut(s) 713, 1350
FalI AAGNNNNNCTT 4 cut(s) 711, 743, 1201, 1233
FaqI GGGAC 2 cut(s) 96, 1432
FatI CATG 2 cut(s) 709, 1346
FauI CCCGC 8 cut(s) 27, 64, 126, 136, 244, 382, 435, 606
FbaI TGATCA 2 cut(s) 213, 1306
FblI GTMKAC 1 cut(s) 1266
FriOI GRGCYC 2 cut(s) 45, 193
FspBI CTAG 6 cut(s) 431, 738, 1127, 1359, 1376, 1498
GlaI GCGC 1 cut(s) 350
GsaI CCCAGC 3 cut(s) 34, 595, 907
GsuI CTGGAG 2 cut(s) 975, 1356
HaeII RGCGCY 1 cut(s) 352
HaeIII GGCC 4 cut(s) 191, 590, 965, 1092
HapII CCGG 7 cut(s) 282, 302, 330, 341, 440, 638, 650
HhaI GCGC 1 cut(s) 351
Hin1II CATG 2 cut(s) 713, 1350
Hin6I GCGC 1 cut(s) 349
HinP1I GCGC 1 cut(s) 349
HincII GTYRAC 1 cut(s) 1384
HindII GTYRAC 1 cut(s) 1384
HinfI GANTC 2 cut(s) 914, 1441
HpaII CCGG 7 cut(s) 282, 302, 330, 341, 440, 638, 650
Hpy166II GTNNAC 5 cut(s) 1058, 1267, 1366, 1384, 1455
Hpy188I TCNGA 5 cut(s) 213, 388, 919, 1201, 1276
Hpy188III TCNNGA 6 cut(s) 282, 440, 794, 991, 1294, 1445
Hpy8I GTNNAC 5 cut(s) 1058, 1267, 1366, 1384, 1455
HpyAV CCTTC 2 cut(s) 305, 655
HpyCH4III ACNGT 1 cut(s) 757
HpyCH4V TGCA 5 cut(s) 446, 458, 878, 1205, 1350
HpyF10VI GCNNNNNNNGC 2 cut(s) 40, 374
HpyF3I CTNAG 5 cut(s) 126, 204, 1292, 1422, 1470
Hsp92II CATG 2 cut(s) 713, 1350
HspAI GCGC 1 cut(s) 349
Kpn2I TCCGGA 2 cut(s) 281, 439
Ksp22I TGATCA 2 cut(s) 213, 1306
Kzo9I GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
LmnI GCTCC 7 cut(s) 40, 48, 164, 492, 561, 1331, 1471
LweI GCATC 5 cut(s) 433, 467, 1030, 1192, 1438
MaeI CTAG 6 cut(s) 431, 738, 1127, 1359, 1376, 1498
MaeIII GTNAC 2 cut(s) 470, 1429
MalI GATC 6 cut(s) 108, 210, 215, 286, 873, 1308
MboI GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
MboII GAAGA 3 cut(s) 520, 900, 1138
MfeI CAATTG 1 cut(s) 217
MflI RGATCY 3 cut(s) 106, 208, 284
MhlI GDGCHC 5 cut(s) 45, 193, 375, 504, 1199
MluCI AATT 6 cut(s) 75, 217, 803, 891, 1074, 1133
MlyI GAGTC 2 cut(s) 923, 1450
MmeI TCCRAC 3 cut(s) 411, 657, 739
MnlI CCTC 8 cut(s) 332, 533, 1073, 1123, 1225, 1301, 1331, 1417
Mph1103I ATGCAT 2 cut(s) 460, 1352
MroI TCCGGA 2 cut(s) 281, 439
MseI TTAA 1 cut(s) 411
MslI CAYNNNNRTG 1 cut(s) 1401
MspA1I CMGCKG 1 cut(s) 34
MspI CCGG 7 cut(s) 282, 302, 330, 341, 440, 638, 650
MspR9I CCNGG 7 cut(s) 302, 303, 341, 353, 638, 650, 1493
MunI CAATTG 1 cut(s) 217
Mva1269I GAATGC 3 cut(s) 460, 638, 1468
MvaI CCWGG 2 cut(s) 353, 1493
MvnI CGCG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 40, 374
NciI CCSGG 5 cut(s) 302, 303, 341, 638, 650
NdeII GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
NlaIII CATG 2 cut(s) 713, 1350
NlaIV GGNNCC 5 cut(s) 108, 191, 286, 372, 438
NmuCI GTSAC 2 cut(s) 470, 1429
NsiI ATGCAT 2 cut(s) 460, 1352
NspI RCATGY 2 cut(s) 713, 1350
PctI GAATGC 3 cut(s) 460, 638, 1468
PleI GAGTC 2 cut(s) 922, 1449
PpsI GAGTC 2 cut(s) 922, 1449
Psp124BI GAGCTC 1 cut(s) 45
Psp6I CCWGG 2 cut(s) 351, 1491
PspFI CCCAGC 3 cut(s) 30, 591, 903
PspGI CCWGG 2 cut(s) 351, 1491
PspN4I GGNNCC 5 cut(s) 108, 191, 286, 372, 438
PspOMI GGGCCC 1 cut(s) 189
PspPI GGNCC 7 cut(s) 4, 189, 190, 279, 355, 589, 1091
PsuI RGATCY 3 cut(s) 106, 208, 284
RsaI GTAC 2 cut(s) 152, 1235
RsaNI GTAC 2 cut(s) 151, 1234
RseI CAYNNNNRTG 1 cut(s) 1401
SacI GAGCTC 1 cut(s) 45
SaqAI TTAA 1 cut(s) 411
Sau3AI GATC 6 cut(s) 106, 208, 213, 284, 871, 1306
Sau96I GGNCC 7 cut(s) 4, 189, 190, 279, 355, 589, 1091
SchI GAGTC 2 cut(s) 923, 1450
ScrFI CCNGG 7 cut(s) 302, 303, 341, 353, 638, 650, 1493
SduI GDGCHC 5 cut(s) 45, 193, 375, 504, 1199
SfaNI GCATC 5 cut(s) 433, 467, 1030, 1192, 1438
SinI GGWCC 3 cut(s) 4, 279, 355
SmaI CCCGGG 1 cut(s) 303
SmiMI CAYNNNNRTG 1 cut(s) 1401
SmlI CTYRAG 1 cut(s) 1167
SmoI CTYRAG 1 cut(s) 1167
Sse9I AATT 6 cut(s) 75, 217, 803, 891, 1074, 1133
SspI AATATT 1 cut(s) 1487
SspMI CTAG 6 cut(s) 431, 738, 1127, 1359, 1376, 1498
SstI GAGCTC 1 cut(s) 45
StyD4I CCNGG 7 cut(s) 300, 301, 339, 351, 636, 648, 1491
TaaI ACNGT 1 cut(s) 757
TaqI TCGA 1 cut(s) 1446
TasI AATT 6 cut(s) 75, 217, 803, 891, 1074, 1133
TatI WGTACW 2 cut(s) 150, 1233
Tru1I TTAA 1 cut(s) 411
Tru9I TTAA 1 cut(s) 411
TscAI CASTG 1 cut(s) 509
TseFI GTSAC 2 cut(s) 470, 1429
Tsp45I GTSAC 2 cut(s) 470, 1429
TspDTI ATGAA 4 cut(s) 467, 645, 1475, 1493
TspGWI ACGGA 1 cut(s) 458
TspMI CCCGGG 1 cut(s) 301
TspRI CASTG 1 cut(s) 509
VpaK11BI GGWCC 3 cut(s) 4, 279, 355
XapI RAATTY 3 cut(s) 75, 891, 1133
XceI RCATGY 2 cut(s) 713, 1350
XcmI CCANNNNNNNNNTGG 1 cut(s) 1052
XmaI CCCGGG 1 cut(s) 301
XmiI GTMKAC 1 cut(s) 1266
XspI CTAG 6 cut(s) 431, 738, 1127, 1359, 1376, 1498
Zsp2I ATGCAT 2 cut(s) 460, 1352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.