FvH4_6g19271

Belongs to the glycosyl hydrolase 32 family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
12726700 .. 12729295
2596 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g19271.t1

Sequence Viewer

Length: 1215 bp
ATGAACGCCAGCCAGTTCCGTGACCCCACCACGGCGTGGTGGTTCAACGGCTACTGGAGGATCATAGTCGGATCAAAGAAACACCACCAGGGCGTGGCGGAACTTTACCGGAGCATGGATTTCAAGTTATGGGTGAAGAGCAACCACCCGCTCCATTCGGCTCCGGACACCGGCATGTGGGAGTGCCCGGACTTTTATCCTTTGTACAAGAACGGGAACAGGCAGGGAGCGGACACGTCGAGAGTTGGGCAGGACGTGAAGCACATGTTCAAGGTGAGCCTGGATGAGACGAGGTATGAGTACTACACACTGGGGACGTATAAGCCGGAAGATGACAGGTACACAGTGGATCCGGGAATGAAGGACAGTCGGGAAGGGTTGAGATATGATTATGGCAACTTCTATGCCTCCAAAACTTTCTTTGATCCTGTAAAGAGTAGGAGGATTTTGTGGGGTTGGTCTAATGAGTCTGATTCAGCTGATGATGATACAAAAAAGGGGCGGGCCGGAATTCAGGCGATTCCACGAGAGGTATGGCTTAGTCCTGACGGGAAGCAAGTGCTACAATGGCCCATCCAAGAAGTGGAAACTTTGAGGGGGAAAAAGACTGACATGACAAATCAAATTCTAGAACAAGGAAAGACTGTTGGAGTTCGTGGAATAACTGCTGCACAGGTCGATGTTGAAGTTACCTTCAGTGTTCCAAACCTGGACAAAGCTGAGGAGTATGATCCTAATTGGCCGGATGGGCAAACGGCGTGTGCGGCAAAGCGTTTGAATGTTCCAGGTGGTGTTGGGCCATTCGGACTCTTAACATTGGCCTCTCAACACCTAGAGGAGTTCACTCCTGTCTTCTTTAGGATTTTCAAAACAAAAGAGCAAAAGCACAAGGTTCTTATGTGCTCTGACGGAAAGTTTTCGACGTTGAAGCCTTTCGACGAGAAACAGTATAGACCATCATTTGGGGGATTAGTAGATGTACATATAGCCGCAGAAAAGAAGATTTCCCTCAGGACTTTCATTGATCATTCTGTTGTTGAAAGTTTTGGAGCAGGAGGAAAAACGTGCATCTTATCTAGGGTTTATCCAACCCTAGCTGTAAACGATGCAGCTCACTTGTTTCTGTTCAACAATGGCACTGTGCCTATTACTGTTCAGAGTCTCACTGCTTGGGATATGAATGCTCCCAAGTCCATGAACCAGGGCAAAAAATAG

Protein Analysis

405

Amino Acids

45.81

Weight (kDa)

8.43

Isoelectric Point (pI)

28.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_32N PF00251 2 - 191 1.6e-46 Glycosyl hydrolases family 32 N-terminal domain
Glyco_hydro_32C PF08244 194 - 392 9.8e-24 Glycosyl hydrolases family 32 C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 4 cut(s) 36, 94, 583, 962
AccBSI CCGCTC 2 cut(s) 151, 230
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 6 cut(s) 98, 149, 230, 502, 764, 990
AclWI GGATC 6 cut(s) 68, 79, 344, 357, 419, 725
AcoI YGGCCR 1 cut(s) 740
AcsI RAATTY 2 cut(s) 510, 624
AcuI CTGAAG 1 cut(s) 679
AdeI CACNNNGTG 1 cut(s) 36
AfaI GTAC 4 cut(s) 206, 302, 341, 981
AfiI CCNNNNNNNGG 8 cut(s) 31, 36, 94, 115, 170, 177, 583, 962
AflIII ACRYGT 2 cut(s) 234, 264
AgsI TTSAA 9 cut(s) 46, 124, 271, 686, 778, 868, 928, 1040, 1129
AjiI CACGTC 2 cut(s) 237, 256
AjnI CCWGG 5 cut(s) 87, 279, 708, 784, 1200
AluBI AGCT 4 cut(s) 479, 719, 1097, 1112
AluI AGCT 4 cut(s) 479, 719, 1097, 1112
Alw21I GWGCWC 1 cut(s) 905
Alw26I GTCTC 2 cut(s) 281, 1166
AlwI GGATC 6 cut(s) 68, 79, 344, 357, 419, 725
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 5 cut(s) 504, 569, 740, 797, 819
ApeKI GCWGC 2 cut(s) 668, 1109
ApoI RAATTY 2 cut(s) 510, 624
Asp700I GAANNNNTTC 2 cut(s) 916, 932
AspS9I GGNCC 3 cut(s) 504, 570, 797
AsuC2I CCSGG 2 cut(s) 188, 354
AsuHPI GGTGA 2 cut(s) 145, 286
AxyI CCTNAGG 1 cut(s) 1010
BaeGI GKGCMC 1 cut(s) 188
BamHI GGATCC 1 cut(s) 349
BauI CACGAG 1 cut(s) 525
BbsI GAAGAC 1 cut(s) 844
Bbv12I GWGCWC 1 cut(s) 905
BbvCI CCTCAGC 1 cut(s) 720
BbvI GCAGC 2 cut(s) 655, 1121
BccI CCATC 3 cut(s) 581, 740, 964
BceAI ACGGC 3 cut(s) 48, 64, 771
BciT130I CCWGG 5 cut(s) 89, 281, 710, 786, 1202
BclI TGATCA 1 cut(s) 1024
BcnI CCSGG 2 cut(s) 188, 354
BcoDI GTCTC 2 cut(s) 281, 1166
BfaI CTAG 4 cut(s) 629, 833, 1077, 1094
BglI GCCNNNNNGGC 1 cut(s) 748
BisI GCNGC 4 cut(s) 669, 765, 990, 1110
BlsI GCNGC 4 cut(s) 670, 766, 991, 1111
BmcAI AGTACT 1 cut(s) 302
Bme1390I CCNGG 7 cut(s) 89, 188, 281, 354, 710, 786, 1202
BmgBI CACGTC 2 cut(s) 237, 256
BmgT120I GGNCC 3 cut(s) 504, 570, 797
BmiI GGNNCC 2 cut(s) 162, 351
BmrFI CCNGG 7 cut(s) 89, 188, 281, 354, 710, 786, 1202
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 2 cut(s) 1077, 1096
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 844
BpmI CTGGAG 1 cut(s) 76
Bpu10I CCTNAGC 1 cut(s) 720
BpuMI CCSGG 2 cut(s) 188, 354
BsaJI CCNNGG 3 cut(s) 30, 88, 1201
BsaWI WCCGGW 2 cut(s) 108, 163
Bsc4I CCNNNNNNNGG 8 cut(s) 31, 36, 94, 115, 170, 177, 583, 962
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 13, 59, 315
Bse21I CCTNAGG 1 cut(s) 1010
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 5 cut(s) 89, 281, 710, 786, 1202
BseDI CCNNGG 3 cut(s) 30, 88, 1201
BseGI GGATG 3 cut(s) 289, 573, 751
BseLI CCNNNNNNNGG 8 cut(s) 31, 36, 94, 115, 170, 177, 583, 962
BseMII CTCAG 2 cut(s) 711, 1024
BseNI ACTGG 3 cut(s) 13, 59, 315
BseRI GAGGAG 2 cut(s) 737, 851
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 2 cut(s) 655, 1121
BsgI GTGCAG 1 cut(s) 654
BshFI GGCC 5 cut(s) 506, 571, 742, 799, 821
BsiHKAI GWGCWC 1 cut(s) 905
BsiSI CCGG 8 cut(s) 109, 164, 171, 188, 326, 353, 507, 743
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 8 cut(s) 31, 36, 94, 115, 170, 177, 583, 962
BsmAI GTCTC 2 cut(s) 281, 1166
BsmBI CGTCTC 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 1186
BsnI GGCC 5 cut(s) 506, 571, 742, 799, 821
Bsp1286I GDGCHC 2 cut(s) 188, 905
Bsp13I TCCGGA 1 cut(s) 163
Bsp1407I TGTACA 2 cut(s) 204, 979
Bsp143I GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
BspACI CCGC 6 cut(s) 98, 149, 230, 502, 764, 990
BspANI GGCC 5 cut(s) 506, 571, 742, 799, 821
BspCNI CTCAG 2 cut(s) 712, 1023
BspEI TCCGGA 1 cut(s) 163
BspLI GGNNCC 2 cut(s) 162, 351
BspPI GGATC 6 cut(s) 68, 79, 344, 357, 419, 725
BspQI GCTCTTC 1 cut(s) 131
BsrBI CCGCTC 2 cut(s) 151, 230
BsrFI RCCGGY 1 cut(s) 170
BsrGI TGTACA 2 cut(s) 204, 979
BsrI ACTGG 3 cut(s) 13, 59, 315
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 30, 88, 1201
BssMI GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
BssSI CACGAG 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 525
Bst2UI CCWGG 5 cut(s) 89, 281, 710, 786, 1202
Bst4CI ACNGT 6 cut(s) 346, 368, 646, 948, 1141, 1153
Bst6I CTCTTC 1 cut(s) 131
BstAUI TGTACA 2 cut(s) 204, 979
BstC8I GCNNGC 2 cut(s) 10, 504
BstDEI CTNAG 3 cut(s) 539, 720, 1010
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 3 cut(s) 289, 573, 751
BstKTI GATC 6 cut(s) 63, 74, 352, 427, 733, 1027
BstMAI GTCTC 2 cut(s) 281, 1166
BstMBI GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 568, 748, 764
BstNI CCWGG 5 cut(s) 89, 281, 710, 786, 1202
BstNSI RCATGY 2 cut(s) 178, 268
BstSCI CCNGG 7 cut(s) 87, 186, 279, 352, 708, 784, 1200
BstSLI GKGCMC 1 cut(s) 188
BstV1I GCAGC 2 cut(s) 655, 1121
BstV2I GAAGAC 1 cut(s) 844
BstX2I RGATCY 1 cut(s) 349
BstYI RGATCY 1 cut(s) 349
Bsu36I CCTNAGG 1 cut(s) 1010
BsuRI GGCC 5 cut(s) 506, 571, 742, 799, 821
BtgI CCRYGG 1 cut(s) 30
BtrI CACGTC 2 cut(s) 237, 256
BtsCI GGATG 3 cut(s) 289, 573, 751
BtsI GCAGTG 1 cut(s) 1164
BtsIMutI CAGTG 5 cut(s) 308, 351, 703, 1137, 1164
Cac8I GCNNGC 2 cut(s) 10, 504
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 3 cut(s) 504, 570, 797
Csp6I GTAC 4 cut(s) 205, 301, 340, 980
CviAII CATG 5 cut(s) 115, 175, 265, 613, 1195
CviQI GTAC 4 cut(s) 205, 301, 340, 980
DdeI CTNAG 3 cut(s) 539, 720, 1010
DpnI GATC 6 cut(s) 62, 73, 351, 426, 732, 1026
DpnII GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
DraIII CACNNNGTG 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 740
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
EciI GGCGGA 1 cut(s) 113
Eco57I CTGAAG 1 cut(s) 679
Eco81I CCTNAGG 1 cut(s) 1010
EcoRI GAATTC 1 cut(s) 510
EcoRII CCWGG 5 cut(s) 87, 279, 708, 784, 1200
Esp3I CGTCTC 1 cut(s) 281
FaeI CATG 5 cut(s) 118, 178, 268, 616, 1198
FaqI GGGAC 1 cut(s) 328
FatI CATG 5 cut(s) 114, 174, 264, 612, 1194
FauI CCCGC 2 cut(s) 156, 495
FbaI TGATCA 1 cut(s) 1024
Fnu4HI GCNGC 4 cut(s) 669, 765, 990, 1110
FokI GGATG 3 cut(s) 296, 560, 758
Fsp4HI GCNGC 4 cut(s) 669, 765, 990, 1110
FspBI CTAG 4 cut(s) 629, 833, 1077, 1094
GluI GCNGC 4 cut(s) 669, 765, 990, 1110
GsuI CTGGAG 1 cut(s) 76
HaeIII GGCC 5 cut(s) 506, 571, 742, 799, 821
HapII CCGG 8 cut(s) 109, 164, 171, 188, 326, 353, 507, 743
Hin1II CATG 5 cut(s) 118, 178, 268, 616, 1198
HinfI GANTC 5 cut(s) 467, 473, 520, 807, 1159
HpaII CCGG 8 cut(s) 109, 164, 171, 188, 326, 353, 507, 743
HphI GGTGA 2 cut(s) 145, 286
Hpy166II GTNNAC 3 cut(s) 342, 843, 1102
Hpy188I TCNGA 5 cut(s) 71, 472, 806, 907, 1158
Hpy188III TCNNGA 6 cut(s) 164, 240, 371, 545, 629, 1012
Hpy8I GTNNAC 3 cut(s) 342, 843, 1102
Hpy99I CGWCG 3 cut(s) 241, 925, 941
HpyAV CCTTC 3 cut(s) 355, 368, 703
HpyCH4III ACNGT 6 cut(s) 346, 368, 646, 948, 1141, 1153
HpyCH4IV ACGT 5 cut(s) 236, 255, 317, 923, 1064
HpyCH4V TGCA 3 cut(s) 671, 1068, 1109
HpyF10VI GCNNNNNNNGC 3 cut(s) 568, 748, 764
HpyF3I CTNAG 3 cut(s) 539, 720, 1010
HpySE526I ACGT 5 cut(s) 236, 255, 317, 923, 1064
Hsp92II CATG 5 cut(s) 118, 178, 268, 616, 1198
Kpn2I TCCGGA 1 cut(s) 163
Ksp22I TGATCA 1 cut(s) 1024
Kzo9I GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
LguI GCTCTTC 1 cut(s) 131
LmnI GCTCC 6 cut(s) 111, 156, 166, 227, 1049, 1189
Lsp1109I GCAGC 2 cut(s) 655, 1121
LweI GCATC 2 cut(s) 1077, 1096
MaeI CTAG 4 cut(s) 629, 833, 1077, 1094
MaeII ACGT 5 cut(s) 236, 255, 317, 923, 1064
MaeIII GTNAC 2 cut(s) 20, 688
MalI GATC 6 cut(s) 62, 73, 351, 426, 732, 1026
MbiI CCGCTC 2 cut(s) 151, 230
MboI GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
MboII GAAGA 4 cut(s) 148, 341, 844, 1012
MflI RGATCY 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 188, 905
MluCI AATT 3 cut(s) 510, 624, 736
MlyI GAGTC 3 cut(s) 476, 801, 1168
MmeI TCCRAC 3 cut(s) 49, 628, 1112
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 916, 932
MseI TTAA 1 cut(s) 812
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 479
MspI CCGG 8 cut(s) 109, 164, 171, 188, 326, 353, 507, 743
MspR9I CCNGG 7 cut(s) 89, 188, 281, 354, 710, 786, 1202
Mva1269I GAATGC 1 cut(s) 1186
MvaI CCWGG 5 cut(s) 89, 281, 710, 786, 1202
MwoI GCNNNNNNNGC 3 cut(s) 568, 748, 764
NciI CCSGG 2 cut(s) 188, 354
NdeII GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
NlaIII CATG 5 cut(s) 118, 178, 268, 616, 1198
NlaIV GGNNCC 2 cut(s) 162, 351
NmuCI GTSAC 1 cut(s) 20
NspI RCATGY 2 cut(s) 178, 268
PciI ACATGT 1 cut(s) 264
PciSI GCTCTTC 1 cut(s) 131
PctI GAATGC 1 cut(s) 1186
PdmI GAANNNNTTC 2 cut(s) 916, 932
PfeI GAWTC 2 cut(s) 473, 520
PflMI CCANNNNNTGG 4 cut(s) 36, 94, 583, 962
PfoI TCCNGGA 1 cut(s) 352
PkrI GCNGC 4 cut(s) 670, 766, 991, 1111
PleI GAGTC 3 cut(s) 475, 801, 1167
PpsI GAGTC 3 cut(s) 475, 801, 1167
PscI ACATGT 1 cut(s) 264
Psp6I CCWGG 5 cut(s) 87, 279, 708, 784, 1200
PspGI CCWGG 5 cut(s) 87, 279, 708, 784, 1200
PspN4I GGNNCC 2 cut(s) 162, 351
PspPI GGNCC 3 cut(s) 504, 570, 797
PsuI RGATCY 1 cut(s) 349
PvuII CAGCTG 1 cut(s) 479
RsaI GTAC 4 cut(s) 206, 302, 341, 981
RsaNI GTAC 4 cut(s) 205, 301, 340, 980
RseI CAYNNNNRTG 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 812
SatI GCNGC 4 cut(s) 669, 765, 990, 1110
Sau3AI GATC 6 cut(s) 60, 71, 349, 424, 730, 1024
Sau96I GGNCC 3 cut(s) 504, 570, 797
ScaI AGTACT 1 cut(s) 302
SchI GAGTC 3 cut(s) 476, 801, 1168
ScrFI CCNGG 7 cut(s) 89, 188, 281, 354, 710, 786, 1202
SduI GDGCHC 2 cut(s) 188, 905
SfaNI GCATC 2 cut(s) 1077, 1096
SmiMI CAYNNNNRTG 1 cut(s) 173
Sse9I AATT 3 cut(s) 510, 624, 736
SsiI CCGC 6 cut(s) 98, 149, 230, 502, 764, 990
SspMI CTAG 4 cut(s) 629, 833, 1077, 1094
StyD4I CCNGG 7 cut(s) 87, 186, 279, 352, 708, 784, 1200
TaaI ACNGT 6 cut(s) 346, 368, 646, 948, 1141, 1153
TaiI ACGT 5 cut(s) 239, 258, 320, 926, 1067
TaqI TCGA 4 cut(s) 239, 678, 920, 936
TasI AATT 3 cut(s) 510, 624, 736
TatI WGTACW 3 cut(s) 204, 300, 979
TauI GCSGC 2 cut(s) 767, 992
TfiI GAWTC 2 cut(s) 473, 520
Tru1I TTAA 1 cut(s) 812
Tru9I TTAA 1 cut(s) 812
TscAI CASTG 5 cut(s) 315, 351, 703, 1144, 1171
TseFI GTSAC 1 cut(s) 20
TseI GCWGC 2 cut(s) 668, 1109
Tsp45I GTSAC 1 cut(s) 20
TspDTI ATGAA 5 cut(s) 17, 374, 1009, 1193, 1211
TspGWI ACGGA 2 cut(s) 8, 924
TspRI CASTG 5 cut(s) 315, 351, 703, 1144, 1171
Van91I CCANNNNNTGG 4 cut(s) 36, 94, 583, 962
XapI RAATTY 2 cut(s) 510, 624
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 2 cut(s) 178, 268
XcmI CCANNNNNNNNNTGG 2 cut(s) 531, 580
XmnI GAANNNNTTC 2 cut(s) 916, 932
XspI CTAG 4 cut(s) 629, 833, 1077, 1094
ZrmI AGTACT 1 cut(s) 302
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.