Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002984

Physical Location & Seq

Genomic Coordinates Reverse (-)

11555088 .. 11558451

Gene Structure 3364 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0140500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTCGTTTTTCCACCATTACAACTACTGGATAATTCCGGTCATGATGGAATATTAGGCGTATCATGTATGTTGTATCTGTTCCTGGATCCTCTGTTTCTGTATGCTCCTCTTATCAACGAGGACACCAAGTGTCTCGTGTTGGACAATAGAGTGATGATAGCAGCACTTGTTCTTCGATCACTAGGAGATATTCGTCACCTAATCAGAATATATCTTCTCATTAAGGATGGCTGGGGAAAGTCTTTTTCACTTCAGAAAAAGCTGAGGCTAGCAAATGACACGGTGTCTATTCTTCCTATTCCACAAGTTGCAATTTTAATTTTTTTTCCAAACATGAATGGCTCCAATTCTTTGAAGACAATGACGTTTCTCAACTCCCTTATTGCATTGCAATATCTTCCACGAGTTTATCCCATCTATGTACTGTTTAATGAAATAATTAACACGGATAAAATTGGCGATTGGAGAGACAAGAATCCAAAATGGTCGTCAATCGTCGTCGATCCAAAATGCTTGTCAATATGCTCGTCAATTTTTGTCAATATGATTGGGTACATTATTGCCAGCCATATATTTGGAGCATTTTGGTATTTTTTCTCCGTCCAAAGAGAAATACAGTGTTGGGAACATGCTTGCAGAATTGAAAATGGATGTGAATTTAGTACTTCATGTATTCAAAATACACACAGAAATATCAAACTTTTAAATCGACTGTGCCCTGTAAATCCCCCAAATAAACAAGTATTCGATTTTGGCGTATTTCAAGATGCTTTACAATCCGGCATGCAAAGATCAACAAACTTTCCACAAAAGTTCTTGCAATGTTTATCGTGGGGCATACGAAATATGAGTTCTTTTGGTTCAAACCTCAGTGCTACCAGTACAAATGGAGGGGAAAACTTGCTTGTGGTTGTCTTTTCGATATTTGGATTAGGACTGTTTATGTATCTCCTGGGGCATATGCAGACGGAGTCGGTGAGCCATGACATGTTGATTAGCTCTAACCAACATCATGGAGGTCATGAGTTCAAATCTCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0030312 GO:0033036 GO:0042742 GO:0043207 GO:0044464 GO:0050832 GO:0050896 GO:0051179 GO:0051704 GO:0051707 GO:0052575 GO:0052576 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00052 ko00500 ko01100 map00052 map00500 map01100

Pfam Domains

Protein Families

Glyco_hydro_32C Glyco_hydro_32N

Protein Analysis

347

Amino Acids

39.34

Weight (kDa)

8.3

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002984)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36190 AT3G52600 AT3G52600 AT3G52600
fragaria_vesca	FvH4_6g19270 FvH4_6g19270 FvH4_6g19271
malus_domestica	MD12G1028200.v1.1 MD14G1028500.v1.1
prunus_persica	Prupe.7G103100_v2.0.a1 Prupe.7G103200_v2.0.a1 Prupe.7G103300_v2.0.a1 Prupe.7G103400_v2.0.a1 Prupe.7G103400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0474371 RchiOBHm_Chr3g0474381
rosa_laevigata	RLG00000023930
rosa_multiflora	Rmu_co8392863.1_g000001 Rmu_co8415991.1_g000001 Rmu_co8444851.1_g000001 Rmu_sc0004507.1_g000003 Rmu_sc0004507.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407310 Rroxscaffold_6G00407320
rosa_rugosa	Rorug03G0140200 Rorug03G0140300 Rorug03G0140400 Rorug03G0140500
rosa_samantha	Rh3AG191100 Rh3AG191200 Rh3BG220300 Rh3BG220400 Rh3CG215600 Rh3CG215700 Rh3DG216000 Rh3DG216100
rosa_wichuraiana	Rw3G017430 Rw3G017440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	83, 96, 500
AcsI	RAATTY	1 cut(s)	659
AcuI	CTGAAG	1 cut(s)	239
AdeI	CACNNNGTG	1 cut(s)	132
AfaI	GTAC	4 cut(s)	426, 557, 667, 886
AflIII	ACRYGT	1 cut(s)	990
AgsI	TTSAA	6 cut(s)	358, 647, 680, 767, 867, 1033
AhdI	GACNNNNNGTC	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	84, 954
AluBI	AGCT	2 cut(s)	265, 1002
AluI	AGCT	2 cut(s)	265, 1002
Alw26I	GTCTC	2 cut(s)	140, 465
AlwI	GGATC	3 cut(s)	83, 96, 500
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	659
ArsI	GACNNNNNNTTYG	4 cut(s)	476, 503, 508, 535
AsuHPI	GGTGA	2 cut(s)	191, 991
AsuNHI	GCTAGC	1 cut(s)	271
BaeGI	GKGCMC	1 cut(s)	722
BamHI	GGATCC	1 cut(s)	88
BauI	CACGAG	2 cut(s)	137, 405
BbsI	GAAGAC	1 cut(s)	365
BbvCI	CCTCAGC	1 cut(s)	266
BbvI	GCAGC	1 cut(s)	176
BccI	CCATC	3 cut(s)	41, 224, 425
BciT130I	CCWGG	2 cut(s)	86, 956
BcoDI	GTCTC	2 cut(s)	140, 465
BfaI	CTAG	2 cut(s)	185, 272
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	2 cut(s)	86, 956
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmiI	GGNNCC	2 cut(s)	90, 346
BmrFI	CCNGG	2 cut(s)	86, 956
BmsI	GCATC	1 cut(s)	760
BmtI	GCTAGC	1 cut(s)	275
BpiI	GAAGAC	1 cut(s)	365
Bpu10I	CCTNAGC	1 cut(s)	266
BsaJI	CCNNGG	1 cut(s)	955
BsaWI	WCCGGW	1 cut(s)	38
Bse1I	ACTGG	2 cut(s)	33, 882
Bse3DI	GCAATG	2 cut(s)	389, 830
BseBI	CCWGG	2 cut(s)	86, 956
BseDI	CCNNGG	1 cut(s)	955
BseGI	GGATG	2 cut(s)	235, 659
BseMI	GCAATG	2 cut(s)	389, 830
BseMII	CTCAG	2 cut(s)	257, 886
BseNI	ACTGG	2 cut(s)	33, 882
BseRI	GAGGAG	1 cut(s)	99
BseSI	GKGCMC	1 cut(s)	722
BseXI	GCAGC	1 cut(s)	176
BseYI	CCCAGC	1 cut(s)	234
BsiSI	CCGG	2 cut(s)	39, 783
BsmAI	GTCTC	2 cut(s)	140, 465
Bsp1286I	GDGCHC	1 cut(s)	722
Bsp143I	GATC	4 cut(s)	88, 179, 505, 794
BspCNI	CTCAG	2 cut(s)	258, 885
BspHI	TCATGA	2 cut(s)	43, 1024
BspLI	GGNNCC	2 cut(s)	90, 346
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	83, 96, 500
BsrDI	GCAATG	2 cut(s)	389, 830
BsrI	ACTGG	2 cut(s)	33, 882
BssECI	CCNNGG	1 cut(s)	955
BssMI	GATC	4 cut(s)	88, 179, 505, 794
BssSI	CACGAG	2 cut(s)	137, 405
Bst2BI	CACGAG	2 cut(s)	137, 405
Bst2UI	CCWGG	2 cut(s)	86, 956
Bst4CI	ACNGT	5 cut(s)	286, 429, 621, 717, 942
BstC8I	GCNNGC	4 cut(s)	273, 568, 637, 788
BstDEI	CTNAG	2 cut(s)	266, 872
BstF5I	GGATG	2 cut(s)	235, 659
BstKTI	GATC	4 cut(s)	91, 182, 508, 797
BstMAI	GTCTC	2 cut(s)	140, 465
BstMBI	GATC	4 cut(s)	88, 179, 505, 794
BstNI	CCWGG	2 cut(s)	86, 956
BstNSI	RCATGY	3 cut(s)	635, 790, 994
BstSCI	CCNGG	2 cut(s)	84, 954
BstSLI	GKGCMC	1 cut(s)	722
BstV1I	GCAGC	1 cut(s)	176
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	88
BstXI	CCANNNNNNTGG	2 cut(s)	578, 1016
BstYI	RGATCY	1 cut(s)	88
BtsCI	GGATG	2 cut(s)	235, 659
BtsIMutI	CAGTG	3 cut(s)	626, 880, 1039
Cac8I	GCNNGC	4 cut(s)	273, 568, 637, 788
CciI	TCATGA	2 cut(s)	43, 1024
Csp6I	GTAC	4 cut(s)	425, 556, 666, 885
CviJI	RGCY	7 cut(s)	234, 265, 271, 345, 570, 984, 1002
CviKI_1	RGCY	7 cut(s)	234, 265, 271, 345, 570, 984, 1002
CviQI	GTAC	4 cut(s)	425, 556, 666, 885
DdeI	CTNAG	2 cut(s)	266, 872
DpnI	GATC	4 cut(s)	90, 181, 507, 796
DpnII	GATC	4 cut(s)	88, 179, 505, 794
DraI	TTTAAA	1 cut(s)	708
DraIII	CACNNNGTG	1 cut(s)	132
DriI	GACNNNNNGTC	1 cut(s)	286
Eam1105I	GACNNNNNGTC	1 cut(s)	286
Eco57I	CTGAAG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	84, 954
FauNDI	CATATG	1 cut(s)	963
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	2 cut(s)	242, 666
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	185, 272
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	238
HapII	CCGG	2 cut(s)	39, 783
HinfI	GANTC	2 cut(s)	478, 974
HpaII	CCGG	2 cut(s)	39, 783
HphI	GGTGA	2 cut(s)	191, 991
Hpy188I	TCNGA	2 cut(s)	209, 258
Hpy188III	TCNNGA	3 cut(s)	44, 767, 1025
Hpy99I	CGWCG	2 cut(s)	503, 506
HpyCH4III	ACNGT	5 cut(s)	286, 429, 621, 717, 942
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	7 cut(s)	314, 389, 394, 639, 790, 823, 967
HpyF3I	CTNAG	2 cut(s)	266, 872
HpySE526I	ACGT	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	88, 179, 505, 794
LmnI	GCTCC	3 cut(s)	112, 350, 581
Lsp1109I	GCAGC	1 cut(s)	176
LweI	GCATC	1 cut(s)	760
MaeI	CTAG	2 cut(s)	185, 272
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	4 cut(s)	90, 181, 507, 796
MboI	GATC	4 cut(s)	88, 179, 505, 794
MboII	GAAGA	5 cut(s)	167, 209, 287, 370, 392
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	722
MluCI	AATT	9 cut(s)	34, 315, 321, 349, 441, 456, 534, 642, 659
MlyI	GAGTC	1 cut(s)	983
MmeI	TCCRAC	1 cut(s)	123
MnlI	CCTC	7 cut(s)	102, 115, 120, 261, 881, 887, 1013
MseI	TTAA	5 cut(s)	225, 320, 432, 444, 707
MspI	CCGG	2 cut(s)	39, 783
MspR9I	CCNGG	2 cut(s)	86, 956
MvaI	CCWGG	2 cut(s)	86, 956
NdeI	CATATG	1 cut(s)	963
NdeII	GATC	4 cut(s)	88, 179, 505, 794
NheI	GCTAGC	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	90, 346
NmuCI	GTSAC	1 cut(s)	197
NspI	RCATGY	3 cut(s)	635, 790, 994
PaeI	GCATGC	1 cut(s)	790
PagI	TCATGA	2 cut(s)	43, 1024
PciI	ACATGT	1 cut(s)	990
PcsI	WCGNNNNNNNCGW	1 cut(s)	756
PfeI	GAWTC	1 cut(s)	478
PflFI	GACNNNGTC	1 cut(s)	973
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	982
PpsI	GAGTC	1 cut(s)	982
PscI	ACATGT	1 cut(s)	990
Psp6I	CCWGG	2 cut(s)	84, 954
PspFI	CCCAGC	1 cut(s)	234
PspGI	CCWGG	2 cut(s)	84, 954
PspN4I	GGNNCC	2 cut(s)	90, 346
PsuI	RGATCY	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	973
RsaI	GTAC	4 cut(s)	426, 557, 667, 886
RsaNI	GTAC	4 cut(s)	425, 556, 666, 885
SaqAI	TTAA	5 cut(s)	225, 320, 432, 444, 707
SatI	GCNGC	1 cut(s)	165
Sau3AI	GATC	4 cut(s)	88, 179, 505, 794
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	983
ScrFI	CCNGG	2 cut(s)	86, 956
SduI	GDGCHC	1 cut(s)	722
SetI	ASST	6 cut(s)	204, 267, 371, 873, 1004, 1024
SfaNI	GCATC	1 cut(s)	760
SphI	GCATGC	1 cut(s)	790
Sse9I	AATT	9 cut(s)	34, 315, 321, 349, 441, 456, 534, 642, 659
SspI	AATATT	1 cut(s)	54
SspMI	CTAG	2 cut(s)	185, 272
StyD4I	CCNGG	2 cut(s)	84, 954
TaaI	ACNGT	5 cut(s)	286, 429, 621, 717, 942
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	5 cut(s)	178, 504, 712, 750, 923
TasI	AATT	9 cut(s)	34, 315, 321, 349, 441, 456, 534, 642, 659
TatI	WGTACW	3 cut(s)	424, 665, 884
TfiI	GAWTC	1 cut(s)	478
Tru1I	TTAA	5 cut(s)	225, 320, 432, 444, 707
Tru9I	TTAA	5 cut(s)	225, 320, 432, 444, 707
TscAI	CASTG	2 cut(s)	626, 880
TseFI	GTSAC	1 cut(s)	197
TseI	GCWGC	1 cut(s)	164
Tsp45I	GTSAC	1 cut(s)	197
TspDTI	ATGAA	3 cut(s)	353, 450, 660
TspGWI	ACGGA	3 cut(s)	464, 592, 986
TspRI	CASTG	2 cut(s)	626, 880
Tth111I	GACNNNGTC	1 cut(s)	973
XapI	RAATTY	1 cut(s)	659
XceI	RCATGY	3 cut(s)	635, 790, 994
XspI	CTAG	2 cut(s)	185, 272
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.