FvH4_6g24150

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0014282
Physical Location & Seq
Forward (+)
18225040 .. 18226684
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g24150.t1

Sequence Viewer

Length: 858 bp
ATGAACCTTCAAAGAAGCAATAGCATTAGTACTAGCTCCATCACAACTAGAAAAATCGTCCCTTCAAACCAGCTCATCAGATCCTCCTCAACTGCTCTGGCACCACCACAACATCATCACCACCGCCGTCGACAAAACGACGACGTCTCCAACAAGCTACTCATTCCAAAACACAACTCTTCATCGTCCCCGGTCTCTTTCGACCACCTCTCCAAATCCCAAACAAAGATCTCCTCACTCCTCCGCTCTTTTCTTAACCTCATCTCCTTCCCAGCCACCATCATCAGTCTCCCCGCCAGCTGCAAGTGGCTCGCCATCTCTTCCCACCTCTCGGTCACACCCTCTCTTGGACGGAAAGTCACCGGAACCCTGTTCGGTAACCGCCGTGGCAGCGTCAGCTTCGCCGTCCAGCTCGACCCTAGGTCAGAGCCCGTTTTGCTTCTTGAGCTTGCCATGTCCACGTCTTCCCTCGTTAAGGAGATGTCTTCCGGACTCGTCCGCATTGCTCTCGAGTCCGAAAGACACCAGGGTTCCGGCCGCCGGAAACCTTTGTTTCACGAGCCGACCTGGACCATGTACTGCAACGGAAGGAAGTTGGGGTGCGCGGCGTCTCGCACATGCGGAGAGTCCGACTGGCACGTGCTGAGTACCGTCCGGAGCATTTCTGTCGGAGCCGGGGTGATTCCGGTGGTGGACGACGGGAAAAAGGGGGCGTCCGAGGGTATAGGCGAGTTGCTTTACATGAGGGCTCGGTTTGAACGAGTTGTGGGGAGCCGTGACTCGGAGGCCTTTTACATGTTGAATCCTGATGGGAGTAATGGAGGTCCTGAACTCAGCATCTTTTTGCTTAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

286

Amino Acids

31.15

Weight (kDa)

10.17

Isoelectric Point (pI)

57.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 120 - 284 1.6e-66 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41660
fragaria_vesca FvH4_6g24150
malus_domestica MD12G1076100.v1.1 MD14G1074600.v1.1
prunus_persica Prupe.7G056000_v2.0.a1
pyrus_communis pycom14g06360
rosa_chinensis RchiOBHm_Chr3g0483021
rosa_laevigata RLG00000023306
rosa_multiflora Rmu_sc0001098.1_g000001 Rmu_sc0001098.1_g000002
rosa_roxburghii Rroxscaffold_6G00398730
rosa_rugosa Rorug03G0203100
rosa_samantha Rh3AG251700 Rh3BG288200 Rh3CG285700 Rh3DG281400
rosa_wichuraiana Rw3G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 246
AccI GTMKAC 1 cut(s) 130
AccII CGCG 1 cut(s) 605
AccIII TCCGGA 2 cut(s) 488, 654
AciI CCGC 8 cut(s) 124, 244, 294, 382, 499, 538, 605, 621
AclWI GGATC 1 cut(s) 75
AcoI YGGCCR 1 cut(s) 535
AcvI CACGTG 1 cut(s) 640
AcyI GRCGYC 3 cut(s) 144, 608, 713
AfaI GTAC 3 cut(s) 31, 578, 649
AfiI CCNNNNNNNGG 5 cut(s) 331, 347, 475, 540, 781
AflIII ACRYGT 1 cut(s) 795
AgsI TTSAA 4 cut(s) 11, 66, 758, 802
AhdI GACNNNNNGTC 2 cut(s) 356, 421
AjiI CACGTC 1 cut(s) 462
AjnI CCWGG 2 cut(s) 525, 566
AluBI AGCT 7 cut(s) 36, 73, 157, 300, 399, 412, 448
AluI AGCT 7 cut(s) 36, 73, 157, 300, 399, 412, 448
Alw26I GTCTC 4 cut(s) 151, 199, 293, 615
AlwI GGATC 1 cut(s) 75
Ama87I CYCGRG 1 cut(s) 509
Aor13HI TCCGGA 2 cut(s) 488, 654
AoxI GGCC 2 cut(s) 535, 786
ApeKI GCWGC 2 cut(s) 300, 390
AspA2I CCTAGG 1 cut(s) 419
AspLEI GCGC 1 cut(s) 605
AspS9I GGNCC 2 cut(s) 570, 824
AsuC2I CCSGG 2 cut(s) 191, 676
AsuHPI GGTGA 3 cut(s) 110, 352, 691
AvaI CYCGRG 1 cut(s) 509
AvaII GGWCC 2 cut(s) 570, 824
AvrII CCTAGG 1 cut(s) 419
BanI GGYRCC 1 cut(s) 100
BanII GRGCYC 2 cut(s) 432, 751
BauI CACGAG 1 cut(s) 557
BbrPI CACGTG 1 cut(s) 640
BbsI GAAGAC 2 cut(s) 456, 477
BbvI GCAGC 2 cut(s) 287, 402
BccI CCATC 4 cut(s) 47, 287, 323, 803
BceAI ACGGC 4 cut(s) 111, 369, 389, 759
BcgI CGANNNNNNTGC 6 cut(s) 292, 326, 490, 524, 649, 683
BciT130I CCWGG 2 cut(s) 527, 568
BcnI CCSGG 2 cut(s) 191, 676
BcoDI GTCTC 4 cut(s) 151, 199, 293, 615
BfaI CTAG 3 cut(s) 33, 48, 420
BglII AGATCT 1 cut(s) 228
BisI GCNGC 4 cut(s) 301, 391, 538, 606
BlnI CCTAGG 1 cut(s) 419
BlsI GCNGC 4 cut(s) 302, 392, 539, 607
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 4 cut(s) 191, 527, 568, 676
Bme18I GGWCC 2 cut(s) 570, 824
BmeRI GACNNNNNGTC 2 cut(s) 356, 421
BmeT110I CYCGRG 1 cut(s) 509
BmgBI CACGTC 1 cut(s) 462
BmgT120I GGNCC 2 cut(s) 570, 824
BmiI GGNNCC 5 cut(s) 102, 367, 532, 673, 773
BmrFI CCNGG 4 cut(s) 191, 527, 568, 676
BmsI GCATC 1 cut(s) 846
BpiI GAAGAC 2 cut(s) 456, 477
BpuEI CTTGAG 1 cut(s) 464
BpuMI CCSGG 2 cut(s) 191, 676
BsaAI YACGTR 1 cut(s) 640
BsaHI GRCGYC 3 cut(s) 144, 608, 713
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 6 cut(s) 189, 385, 419, 526, 675, 717
BsaWI WCCGGW 4 cut(s) 362, 488, 654, 685
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 194, 224, 248, 278, 663, 693
Bsc4I CCNNNNNNNGG 5 cut(s) 331, 347, 475, 540, 781
Bse1I ACTGG 1 cut(s) 638
Bse3DI GCAATG 1 cut(s) 501
BseAI TCCGGA 2 cut(s) 488, 654
BseBI CCWGG 2 cut(s) 527, 568
BseDI CCNNGG 6 cut(s) 189, 385, 419, 526, 675, 717
BseLI CCNNNNNNNGG 5 cut(s) 331, 347, 475, 540, 781
BseMI GCAATG 1 cut(s) 501
BseMII CTCAG 2 cut(s) 635, 847
BseNI ACTGG 1 cut(s) 638
BseRI GAGGAG 3 cut(s) 76, 223, 230
BseX3I CGGCCG 1 cut(s) 535
BseXI GCAGC 2 cut(s) 287, 402
BseYI CCCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 605
Bsh1285I CGRYCG 1 cut(s) 538
BshFI GGCC 2 cut(s) 537, 788
BshNI GGYRCC 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 538
BsiHKCI CYCGRG 1 cut(s) 509
BsiSI CCGG 8 cut(s) 191, 363, 489, 534, 541, 655, 675, 686
BslFI GGGAC 2 cut(s) 44, 172
BslI CCNNNNNNNGG 5 cut(s) 331, 347, 475, 540, 781
BsmAI GTCTC 4 cut(s) 151, 199, 293, 615
BsmBI CGTCTC 2 cut(s) 151, 615
BsmFI GGGAC 2 cut(s) 44, 172
BsnI GGCC 2 cut(s) 537, 788
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 1 cut(s) 509
Bsp1286I GDGCHC 2 cut(s) 432, 751
Bsp13I TCCGGA 2 cut(s) 488, 654
Bsp143I GATC 2 cut(s) 80, 228
BspACI CCGC 8 cut(s) 124, 244, 294, 382, 499, 538, 605, 621
BspANI GGCC 2 cut(s) 537, 788
BspCNI CTCAG 2 cut(s) 636, 846
BspEI TCCGGA 2 cut(s) 488, 654
BspFNI CGCG 1 cut(s) 605
BspLI GGNNCC 5 cut(s) 102, 367, 532, 673, 773
BspPI GGATC 1 cut(s) 75
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 1 cut(s) 501
BsrI ACTGG 1 cut(s) 638
BssECI CCNNGG 6 cut(s) 189, 385, 419, 526, 675, 717
BssMI GATC 2 cut(s) 80, 228
BssNI GRCGYC 3 cut(s) 144, 608, 713
BssSI CACGAG 1 cut(s) 557
BssT1I CCWWGG 1 cut(s) 419
Bst2BI CACGAG 1 cut(s) 557
Bst2UI CCWGG 2 cut(s) 527, 568
Bst4CI ACNGT 1 cut(s) 652
Bst6I CTCTTC 2 cut(s) 184, 325
BstACI GRCGYC 3 cut(s) 144, 608, 713
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 3 cut(s) 298, 312, 450
BstDEI CTNAG 3 cut(s) 644, 833, 848
BstDSI CCRYGG 1 cut(s) 385
BstEII GGTNACC 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 473
BstFNI CGCG 1 cut(s) 605
BstHHI GCGC 1 cut(s) 605
BstKTI GATC 2 cut(s) 83, 231
BstMAI GTCTC 4 cut(s) 151, 199, 293, 615
BstMBI GATC 2 cut(s) 80, 228
BstMCI CGRYCG 1 cut(s) 538
BstMWI GCNNNNNNNGC 4 cut(s) 390, 396, 436, 445
BstNI CCWGG 2 cut(s) 527, 568
BstNSI RCATGY 2 cut(s) 621, 799
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 189, 525, 566, 674
BstUI CGCG 1 cut(s) 605
BstV1I GCAGC 2 cut(s) 287, 402
BstV2I GAAGAC 2 cut(s) 456, 477
BstX2I RGATCY 2 cut(s) 80, 228
BstYI RGATCY 2 cut(s) 80, 228
BstZI CGGCCG 1 cut(s) 535
BsuRI GGCC 2 cut(s) 537, 788
BtgI CCRYGG 1 cut(s) 385
BtrI CACGTC 1 cut(s) 462
Cac8I GCNNGC 3 cut(s) 298, 312, 450
CfoI GCGC 1 cut(s) 605
Cfr13I GGNCC 2 cut(s) 570, 824
CseI GACGC 3 cut(s) 382, 597, 702
Csp6I GTAC 3 cut(s) 30, 577, 648
CviAII CATG 5 cut(s) 454, 574, 618, 742, 796
CviQI GTAC 3 cut(s) 30, 577, 648
DdeI CTNAG 3 cut(s) 644, 833, 848
DpnI GATC 2 cut(s) 82, 230
DpnII GATC 2 cut(s) 80, 228
DriI GACNNNNNGTC 2 cut(s) 356, 421
EaeI YGGCCR 1 cut(s) 535
EagI CGGCCG 1 cut(s) 535
Eam1104I CTCTTC 2 cut(s) 184, 325
Eam1105I GACNNNNNGTC 2 cut(s) 356, 421
EarI CTCTTC 2 cut(s) 184, 325
EclXI CGGCCG 1 cut(s) 535
Eco130I CCWWGG 1 cut(s) 419
Eco147I AGGCCT 1 cut(s) 788
Eco24I GRGCYC 2 cut(s) 432, 751
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 2 cut(s) 570, 824
Eco52I CGGCCG 1 cut(s) 535
Eco72I CACGTG 1 cut(s) 640
Eco88I CYCGRG 1 cut(s) 509
Eco91I GGTNACC 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 824
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 525, 566
EcoT14I CCWWGG 1 cut(s) 419
EcoT38I GRGCYC 2 cut(s) 432, 751
ErhI CCWWGG 1 cut(s) 419
Esp3I CGTCTC 2 cut(s) 151, 615
FaeI CATG 5 cut(s) 457, 577, 621, 745, 799
FaiI YATR 7 cut(s) 455, 575, 619, 725, 743, 797, 856
FaqI GGGAC 2 cut(s) 44, 172
FatI CATG 5 cut(s) 453, 573, 617, 741, 795
FauI CCCGC 1 cut(s) 301
FblI GTMKAC 1 cut(s) 130
Fnu4HI GCNGC 4 cut(s) 301, 391, 538, 606
FriOI GRGCYC 2 cut(s) 432, 751
Fsp4HI GCNGC 4 cut(s) 301, 391, 538, 606
FspBI CTAG 3 cut(s) 33, 48, 420
GlaI GCGC 1 cut(s) 604
GluI GCNGC 4 cut(s) 301, 391, 538, 606
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 2 cut(s) 537, 788
HapII CCGG 8 cut(s) 191, 363, 489, 534, 541, 655, 675, 686
HgaI GACGC 3 cut(s) 382, 597, 702
HhaI GCGC 1 cut(s) 605
Hin1I GRCGYC 3 cut(s) 144, 608, 713
Hin1II CATG 5 cut(s) 457, 577, 621, 745, 799
Hin6I GCGC 1 cut(s) 603
HinP1I GCGC 1 cut(s) 603
HincII GTYRAC 1 cut(s) 131
HindII GTYRAC 1 cut(s) 131
HinfI GANTC 6 cut(s) 492, 512, 626, 682, 779, 802
HpaII CCGG 8 cut(s) 191, 363, 489, 534, 541, 655, 675, 686
HphI GGTGA 3 cut(s) 110, 352, 691
Hpy166II GTNNAC 3 cut(s) 131, 459, 694
Hpy188I TCNGA 7 cut(s) 80, 427, 517, 631, 671, 718, 784
Hpy188III TCNNGA 7 cut(s) 443, 489, 509, 557, 655, 806, 827
Hpy8I GTNNAC 3 cut(s) 131, 459, 694
Hpy99I CGWCG 4 cut(s) 132, 143, 146, 701
HpyAV CCTTC 4 cut(s) 17, 72, 277, 582
HpyCH4III ACNGT 1 cut(s) 652
HpyCH4IV ACGT 3 cut(s) 144, 461, 639
HpyCH4V TGCA 2 cut(s) 303, 582
HpyF10VI GCNNNNNNNGC 4 cut(s) 390, 396, 436, 445
HpyF3I CTNAG 3 cut(s) 644, 833, 848
HpySE526I ACGT 3 cut(s) 144, 461, 639
Hsp92I GRCGYC 3 cut(s) 144, 608, 713
Hsp92II CATG 5 cut(s) 457, 577, 621, 745, 799
HspAI GCGC 1 cut(s) 603
Kpn2I TCCGGA 2 cut(s) 488, 654
Kzo9I GATC 2 cut(s) 80, 228
LmnI GCTCC 4 cut(s) 41, 657, 671, 771
Lsp1109I GCAGC 2 cut(s) 287, 402
LweI GCATC 1 cut(s) 846
MaeI CTAG 3 cut(s) 33, 48, 420
MaeII ACGT 3 cut(s) 144, 461, 639
MaeIII GTNAC 4 cut(s) 334, 358, 377, 776
MalI GATC 2 cut(s) 82, 230
MbiI CCGCTC 1 cut(s) 246
MboI GATC 2 cut(s) 80, 228
MboII GAAGA 4 cut(s) 171, 312, 456, 477
MflI RGATCY 2 cut(s) 80, 228
MhlI GDGCHC 2 cut(s) 432, 751
MlyI GAGTC 4 cut(s) 486, 521, 635, 773
MmeI TCCRAC 3 cut(s) 174, 649, 654
MroI TCCGGA 2 cut(s) 488, 654
MseI TTAA 2 cut(s) 255, 474
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 8 cut(s) 191, 363, 489, 534, 541, 655, 675, 686
MspR9I CCNGG 4 cut(s) 191, 527, 568, 676
MvaI CCWGG 2 cut(s) 527, 568
MvnI CGCG 1 cut(s) 605
MwoI GCNNNNNNNGC 4 cut(s) 390, 396, 436, 445
NciI CCSGG 2 cut(s) 191, 676
NdeII GATC 2 cut(s) 80, 228
NlaIII CATG 5 cut(s) 457, 577, 621, 745, 799
NlaIV GGNNCC 5 cut(s) 102, 367, 532, 673, 773
NmuCI GTSAC 3 cut(s) 334, 358, 776
NspI RCATGY 2 cut(s) 621, 799
PaeR7I CTCGAG 1 cut(s) 509
PceI AGGCCT 1 cut(s) 788
PciI ACATGT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 1 cut(s) 757
PfeI GAWTC 2 cut(s) 682, 802
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 4 cut(s) 302, 392, 539, 607
PleI GAGTC 4 cut(s) 486, 520, 634, 773
PmaCI CACGTG 1 cut(s) 640
PmlI CACGTG 1 cut(s) 640
PpsI GAGTC 4 cut(s) 486, 520, 634, 773
Ppu21I YACGTR 1 cut(s) 640
PpuMI RGGWCCY 1 cut(s) 824
PscI ACATGT 1 cut(s) 795
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 2 cut(s) 525, 566
PspCI CACGTG 1 cut(s) 640
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 2 cut(s) 525, 566
PspN4I GGNNCC 5 cut(s) 102, 367, 532, 673, 773
PspPI GGNCC 2 cut(s) 570, 824
PspPPI RGGWCCY 1 cut(s) 824
PsuI RGATCY 2 cut(s) 80, 228
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 3 cut(s) 31, 578, 649
RsaNI GTAC 3 cut(s) 30, 577, 648
SalI GTCGAC 1 cut(s) 129
SaqAI TTAA 2 cut(s) 255, 474
SatI GCNGC 4 cut(s) 301, 391, 538, 606
Sau3AI GATC 2 cut(s) 80, 228
Sau96I GGNCC 2 cut(s) 570, 824
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 4 cut(s) 486, 521, 635, 773
ScrFI CCNGG 4 cut(s) 191, 527, 568, 676
SduI GDGCHC 2 cut(s) 432, 751
SfaNI GCATC 1 cut(s) 846
Sfr274I CTCGAG 1 cut(s) 509
SinI GGWCC 2 cut(s) 570, 824
SlaI CTCGAG 1 cut(s) 509
SmlI CTYRAG 2 cut(s) 443, 509
SmoI CTYRAG 2 cut(s) 443, 509
SseBI AGGCCT 1 cut(s) 788
SsiI CCGC 8 cut(s) 124, 244, 294, 382, 499, 538, 605, 621
SspMI CTAG 3 cut(s) 33, 48, 420
StuI AGGCCT 1 cut(s) 788
StyD4I CCNGG 4 cut(s) 189, 525, 566, 674
StyI CCWWGG 1 cut(s) 419
TaaI ACNGT 1 cut(s) 652
TaiI ACGT 3 cut(s) 147, 464, 642
TaqI TCGA 4 cut(s) 130, 201, 414, 510
TaqII GACCGA 1 cut(s) 322
TatI WGTACW 2 cut(s) 29, 576
TauI GCSGC 2 cut(s) 540, 608
TfiI GAWTC 2 cut(s) 682, 802
Tru1I TTAA 2 cut(s) 255, 474
Tru9I TTAA 2 cut(s) 255, 474
TseFI GTSAC 3 cut(s) 334, 358, 776
TseI GCWGC 2 cut(s) 300, 390
Tsp45I GTSAC 3 cut(s) 334, 358, 776
TspDTI ATGAA 2 cut(s) 17, 171
TspGWI ACGGA 2 cut(s) 367, 600
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 570, 824
XagI CCTNNNNNAGG 1 cut(s) 473
XceI RCATGY 2 cut(s) 621, 799
XhoI CTCGAG 1 cut(s) 509
XmaJI CCTAGG 1 cut(s) 419
XmiI GTMKAC 1 cut(s) 130
XspI CTAG 3 cut(s) 33, 48, 420
ZraI GACGTC 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.