Rh3CG285700

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0014282
Physical Location & Seq
Reverse (-)
28805586 .. 28807128
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG285700.1

Sequence Viewer

Length: 876 bp
ATGAACCTCCAAAGAAGCAATAGCATTACTACTAGCTCCACCACAACTAGAAAAATCGTCCCTTCAAACCAGTTCATCAGATCCTCTTCAACAGCTCTGACACCACCTCAAGATCATCACCACCGCCGTCGCCAAAACGACGACGTCTCCAACAAGCTACTGATTCCCAAACACAACTCTTCATCGTCCCCGGTCTCTTTCGACCACCTCTCCAAAACCCAGACAAAGATTTCCTCACTCCTCCGCTCTTTTCTCAACCTCATCTCCTTCCCAGCCGCCATTATCAACCTCCCCGTCAGCTGCAAGTGGCTAGCCATCTCTTCCCACCTATCGGTCACGCCCTCTCTCGGCCGGAAAGTCACCGGAACCTTATTTGGTAACCGCCGTGGCCACGTCAGCTTCGCCGTCCAGCTCGACCCCAGGTCCGATCCCGTCTTGCTTCTCGAGCTGGCCATGTCCACGTCTTCCCTCGTTAAGGAGATGTCTTCCGGACTCGTCCGCATTGCTCTCGAGTCCGAAAGGCATCAGGGTTCCGGCCGTGGTGGCGGCCGGAAGCCTTTGTTTCACGAGCCTACCTGGACCATGTACTGCAATGGGAGGAAGTTGGGGTACGCGGCGTCTCGCATATGCGGAGAGTCCGACTGGCACGTGCTGAATACTGTCGGGAGCGTTTCAGTTGGAGCCGGGGTGATTCCGGTGGTGGATGACGGGAAAGTGGGTAGCGGCGGGTCTTCGGAGGGTCTAGGCGAGTTGCTTTACATGAGGGCTCGGTTTGAACGAGTTGTGGGGAGCCGTGACTCGGAGGCCTTTTACATGTTGAATCCTGATGGGAGTAATGGAGGTCCTGAACTCAGCATCTTCTTGCTTAGAATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

291

Amino Acids

31.61

Weight (kDa)

9.95

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 120 - 290 3.4e-66 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014282)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41660
fragaria_vesca FvH4_6g24150
malus_domestica MD12G1076100.v1.1 MD14G1074600.v1.1
prunus_persica Prupe.7G056000_v2.0.a1
pyrus_communis pycom14g06360
rosa_chinensis RchiOBHm_Chr3g0483021
rosa_laevigata RLG00000023306
rosa_multiflora Rmu_sc0001098.1_g000001 Rmu_sc0001098.1_g000002
rosa_roxburghii Rroxscaffold_6G00398730
rosa_rugosa Rorug03G0203100
rosa_samantha Rh3AG251700 Rh3BG288200 Rh3CG285700 Rh3DG281400
rosa_wichuraiana Rw3G022770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 147
AccBSI CCGCTC 1 cut(s) 246
AccII CGCG 1 cut(s) 614
AccIII TCCGGA 1 cut(s) 488
AclWI GGATC 2 cut(s) 75, 422
AcoI YGGCCR 5 cut(s) 349, 388, 450, 535, 547
AcvI CACGTG 1 cut(s) 649
AcyI GRCGYC 2 cut(s) 144, 617
AfaI GTAC 2 cut(s) 587, 611
AfiI CCNNNNNNNGG 4 cut(s) 331, 347, 475, 799
AflIII ACRYGT 1 cut(s) 813
AgsI TTSAA 4 cut(s) 66, 90, 776, 820
AhdI GACNNNNNGTC 1 cut(s) 421
AjiI CACGTC 2 cut(s) 394, 462
AjnI CCWGG 2 cut(s) 419, 575
AluBI AGCT 7 cut(s) 36, 95, 157, 300, 399, 412, 448
AluI AGCT 7 cut(s) 36, 95, 157, 300, 399, 412, 448
Alw26I GTCTC 3 cut(s) 151, 199, 624
AlwI GGATC 2 cut(s) 75, 422
Ama87I CYCGRG 2 cut(s) 443, 509
Aor13HI TCCGGA 1 cut(s) 488
AoxI GGCC 6 cut(s) 349, 388, 450, 535, 547, 804
ApeKI GCWGC 1 cut(s) 300
AspS9I GGNCC 3 cut(s) 423, 579, 842
AsuC2I CCSGG 2 cut(s) 191, 685
AsuHPI GGTGA 3 cut(s) 110, 352, 700
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 2 cut(s) 443, 509
AvaII GGWCC 3 cut(s) 423, 579, 842
BalI TGGCCA 2 cut(s) 390, 452
BanII GRGCYC 1 cut(s) 769
BarI GAAGNNNNNNTAC 2 cut(s) 593, 625
BauI CACGAG 1 cut(s) 566
BbrPI CACGTG 1 cut(s) 649
BbsI GAAGAC 3 cut(s) 456, 477, 723
BbvI GCAGC 1 cut(s) 287
BccI CCATC 2 cut(s) 323, 821
BceAI ACGGC 5 cut(s) 111, 369, 389, 522, 777
BcgI CGANNNNNNTGC 2 cut(s) 490, 524
BciT130I CCWGG 2 cut(s) 421, 577
BcnI CCSGG 2 cut(s) 191, 685
BcoDI GTCTC 3 cut(s) 151, 199, 624
BfaI CTAG 4 cut(s) 33, 48, 311, 743
BglI GCCNNNNNGGC 1 cut(s) 543
BisI GCNGC 5 cut(s) 276, 301, 547, 615, 724
BlsI GCNGC 5 cut(s) 277, 302, 548, 616, 725
Bme1390I CCNGG 4 cut(s) 191, 421, 577, 685
Bme18I GGWCC 3 cut(s) 423, 579, 842
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 2 cut(s) 443, 509
BmgBI CACGTC 2 cut(s) 394, 462
BmgT120I GGNCC 3 cut(s) 423, 579, 842
BmiI GGNNCC 4 cut(s) 367, 532, 682, 791
BmrFI CCNGG 4 cut(s) 191, 421, 577, 685
BmsI GCATC 2 cut(s) 532, 864
BmtI GCTAGC 1 cut(s) 314
BpiI GAAGAC 3 cut(s) 456, 477, 723
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 191, 685
BsaAI YACGTR 1 cut(s) 649
BsaHI GRCGYC 2 cut(s) 144, 617
BsaI GGTCTC 1 cut(s) 199
BsaJI CCNNGG 5 cut(s) 189, 385, 419, 538, 684
BsaWI WCCGGW 3 cut(s) 362, 488, 694
BsaXI ACNNNNNCTCC 8 cut(s) 131, 161, 194, 224, 248, 278, 672, 702
Bsc4I CCNNNNNNNGG 4 cut(s) 331, 347, 475, 799
Bse1I ACTGG 2 cut(s) 70, 647
Bse3DI GCAATG 2 cut(s) 501, 598
BseAI TCCGGA 1 cut(s) 488
BseBI CCWGG 2 cut(s) 421, 577
BseDI CCNNGG 5 cut(s) 189, 385, 419, 538, 684
BseGI GGATG 1 cut(s) 709
BseLI CCNNNNNNNGG 4 cut(s) 331, 347, 475, 799
BseMI GCAATG 2 cut(s) 501, 598
BseMII CTCAG 1 cut(s) 865
BseNI ACTGG 2 cut(s) 70, 647
BseRI GAGGAG 1 cut(s) 230
BseX3I CGGCCG 3 cut(s) 349, 535, 547
BseXI GCAGC 1 cut(s) 287
BseYI CCCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 614
Bsh1285I CGRYCG 3 cut(s) 352, 538, 550
BshFI GGCC 6 cut(s) 351, 390, 452, 537, 549, 806
BsiEI CGRYCG 3 cut(s) 352, 538, 550
BsiHKCI CYCGRG 2 cut(s) 443, 509
BsiSI CCGG 8 cut(s) 191, 352, 363, 489, 534, 550, 684, 695
BslFI GGGAC 2 cut(s) 44, 172
BslI CCNNNNNNNGG 4 cut(s) 331, 347, 475, 799
BsmAI GTCTC 3 cut(s) 151, 199, 624
BsmBI CGTCTC 2 cut(s) 151, 624
BsmFI GGGAC 2 cut(s) 44, 172
BsnI GGCC 6 cut(s) 351, 390, 452, 537, 549, 806
Bso31I GGTCTC 1 cut(s) 199
BsoBI CYCGRG 2 cut(s) 443, 509
Bsp1286I GDGCHC 1 cut(s) 769
Bsp13I TCCGGA 1 cut(s) 488
Bsp143I GATC 3 cut(s) 80, 112, 427
BspANI GGCC 6 cut(s) 351, 390, 452, 537, 549, 806
BspCNI CTCAG 1 cut(s) 864
BspEI TCCGGA 1 cut(s) 488
BspFNI CGCG 1 cut(s) 614
BspLI GGNNCC 4 cut(s) 367, 532, 682, 791
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 2 cut(s) 75, 422
BspTNI GGTCTC 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 246
BsrDI GCAATG 2 cut(s) 501, 598
BsrI ACTGG 2 cut(s) 70, 647
BssECI CCNNGG 5 cut(s) 189, 385, 419, 538, 684
BssMI GATC 3 cut(s) 80, 112, 427
BssNI GRCGYC 2 cut(s) 144, 617
BssSI CACGAG 1 cut(s) 566
Bst2BI CACGAG 1 cut(s) 566
Bst2UI CCWGG 2 cut(s) 421, 577
Bst4CI ACNGT 1 cut(s) 661
Bst6I CTCTTC 3 cut(s) 91, 184, 325
BstACI GRCGYC 2 cut(s) 144, 617
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 2 cut(s) 312, 450
BstDEI CTNAG 2 cut(s) 851, 866
BstDSI CCRYGG 2 cut(s) 385, 538
BstEII GGTNACC 1 cut(s) 377
BstENI CCTNNNNNAGG 1 cut(s) 473
BstF5I GGATG 1 cut(s) 709
BstFNI CGCG 1 cut(s) 614
BstKTI GATC 3 cut(s) 83, 115, 430
BstMAI GTCTC 3 cut(s) 151, 199, 624
BstMBI GATC 3 cut(s) 80, 112, 427
BstMCI CGRYCG 3 cut(s) 352, 538, 550
BstMWI GCNNNNNNNGC 3 cut(s) 396, 445, 543
BstNI CCWGG 2 cut(s) 421, 577
BstNSI RCATGY 1 cut(s) 817
BstPI GGTNACC 1 cut(s) 377
BstSCI CCNGG 4 cut(s) 189, 419, 575, 683
BstUI CGCG 1 cut(s) 614
BstV1I GCAGC 1 cut(s) 287
BstV2I GAAGAC 3 cut(s) 456, 477, 723
BstX2I RGATCY 1 cut(s) 80
BstYI RGATCY 1 cut(s) 80
BstZI CGGCCG 3 cut(s) 349, 535, 547
BsuRI GGCC 6 cut(s) 351, 390, 452, 537, 549, 806
BtgI CCRYGG 2 cut(s) 385, 538
BtrI CACGTC 2 cut(s) 394, 462
BtsCI GGATG 1 cut(s) 709
Cac8I GCNNGC 2 cut(s) 312, 450
Cfr13I GGNCC 3 cut(s) 423, 579, 842
CseI GACGC 1 cut(s) 606
Csp6I GTAC 2 cut(s) 586, 610
CviAII CATG 4 cut(s) 454, 583, 760, 814
CviQI GTAC 2 cut(s) 586, 610
DdeI CTNAG 2 cut(s) 851, 866
DpnI GATC 3 cut(s) 82, 114, 429
DpnII GATC 3 cut(s) 80, 112, 427
DriI GACNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 5 cut(s) 349, 388, 450, 535, 547
EagI CGGCCG 3 cut(s) 349, 535, 547
Eam1104I CTCTTC 3 cut(s) 91, 184, 325
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 3 cut(s) 91, 184, 325
EclXI CGGCCG 3 cut(s) 349, 535, 547
Eco147I AGGCCT 1 cut(s) 806
Eco24I GRGCYC 1 cut(s) 769
Eco31I GGTCTC 1 cut(s) 199
Eco47I GGWCC 3 cut(s) 423, 579, 842
Eco52I CGGCCG 3 cut(s) 349, 535, 547
Eco72I CACGTG 1 cut(s) 649
Eco88I CYCGRG 2 cut(s) 443, 509
Eco91I GGTNACC 1 cut(s) 377
EcoNI CCTNNNNNAGG 1 cut(s) 473
EcoO109I RGGNCCY 1 cut(s) 842
EcoO65I GGTNACC 1 cut(s) 377
EcoRII CCWGG 2 cut(s) 419, 575
EcoT38I GRGCYC 1 cut(s) 769
Esp3I CGTCTC 2 cut(s) 151, 624
FaeI CATG 4 cut(s) 457, 586, 763, 817
FaiI YATR 7 cut(s) 455, 584, 626, 628, 761, 815, 874
FaqI GGGAC 2 cut(s) 44, 172
FatI CATG 4 cut(s) 453, 582, 759, 813
FauI CCCGC 1 cut(s) 719
FauNDI CATATG 1 cut(s) 626
Fnu4HI GCNGC 5 cut(s) 276, 301, 547, 615, 724
FokI GGATG 1 cut(s) 716
FriOI GRGCYC 1 cut(s) 769
Fsp4HI GCNGC 5 cut(s) 276, 301, 547, 615, 724
FspBI CTAG 4 cut(s) 33, 48, 311, 743
GluI GCNGC 5 cut(s) 276, 301, 547, 615, 724
GsaI CCCAGC 1 cut(s) 275
HaeIII GGCC 6 cut(s) 351, 390, 452, 537, 549, 806
HapII CCGG 8 cut(s) 191, 352, 363, 489, 534, 550, 684, 695
HgaI GACGC 1 cut(s) 606
Hin1I GRCGYC 2 cut(s) 144, 617
Hin1II CATG 4 cut(s) 457, 586, 763, 817
HinfI GANTC 7 cut(s) 163, 492, 512, 635, 691, 797, 820
HpaII CCGG 8 cut(s) 191, 352, 363, 489, 534, 550, 684, 695
HphI GGTGA 3 cut(s) 110, 352, 700
Hpy166II GTNNAC 1 cut(s) 459
Hpy188I TCNGA 7 cut(s) 80, 99, 427, 517, 640, 736, 802
Hpy188III TCNNGA 8 cut(s) 110, 443, 489, 509, 566, 664, 824, 845
Hpy8I GTNNAC 1 cut(s) 459
Hpy99I CGWCG 3 cut(s) 132, 143, 146
HpyAV CCTTC 2 cut(s) 72, 277
HpyCH4III ACNGT 1 cut(s) 661
HpyCH4IV ACGT 4 cut(s) 144, 393, 461, 648
HpyCH4V TGCA 2 cut(s) 303, 591
HpyF10VI GCNNNNNNNGC 3 cut(s) 396, 445, 543
HpyF3I CTNAG 2 cut(s) 851, 866
HpySE526I ACGT 4 cut(s) 144, 393, 461, 648
Hsp92I GRCGYC 2 cut(s) 144, 617
Hsp92II CATG 4 cut(s) 457, 586, 763, 817
Kpn2I TCCGGA 1 cut(s) 488
Kzo9I GATC 3 cut(s) 80, 112, 427
LmnI GCTCC 4 cut(s) 41, 666, 680, 789
Lsp1109I GCAGC 1 cut(s) 287
LweI GCATC 2 cut(s) 532, 864
MaeI CTAG 4 cut(s) 33, 48, 311, 743
MaeII ACGT 4 cut(s) 144, 393, 461, 648
MaeIII GTNAC 4 cut(s) 334, 358, 377, 794
MalI GATC 3 cut(s) 82, 114, 429
MbiI CCGCTC 1 cut(s) 246
MboI GATC 3 cut(s) 80, 112, 427
MboII GAAGA 7 cut(s) 78, 171, 312, 456, 477, 723, 850
MflI RGATCY 1 cut(s) 80
MhlI GDGCHC 1 cut(s) 769
MlsI TGGCCA 2 cut(s) 390, 452
MluNI TGGCCA 2 cut(s) 390, 452
MlyI GAGTC 4 cut(s) 486, 521, 644, 791
MmeI TCCRAC 3 cut(s) 174, 658, 663
Mox20I TGGCCA 2 cut(s) 390, 452
MroI TCCGGA 1 cut(s) 488
MscI TGGCCA 2 cut(s) 390, 452
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 2 cut(s) 390, 452
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 8 cut(s) 191, 352, 363, 489, 534, 550, 684, 695
MspR9I CCNGG 4 cut(s) 191, 421, 577, 685
MvaI CCWGG 2 cut(s) 421, 577
MvnI CGCG 1 cut(s) 614
MwoI GCNNNNNNNGC 3 cut(s) 396, 445, 543
NciI CCSGG 2 cut(s) 191, 685
NdeI CATATG 1 cut(s) 626
NdeII GATC 3 cut(s) 80, 112, 427
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 4 cut(s) 457, 586, 763, 817
NlaIV GGNNCC 4 cut(s) 367, 532, 682, 791
NmeAIII GCCGAG 1 cut(s) 327
NmuCI GTSAC 3 cut(s) 334, 358, 794
NspI RCATGY 1 cut(s) 817
PaeR7I CTCGAG 2 cut(s) 443, 509
PceI AGGCCT 1 cut(s) 806
PciI ACATGT 1 cut(s) 813
PcsI WCGNNNNNNNCGW 1 cut(s) 775
PfeI GAWTC 3 cut(s) 163, 691, 820
PflFI GACNNNGTC 1 cut(s) 143
PkrI GCNGC 5 cut(s) 277, 302, 548, 616, 725
PleI GAGTC 4 cut(s) 486, 520, 643, 791
PmaCI CACGTG 1 cut(s) 649
PmlI CACGTG 1 cut(s) 649
PpsI GAGTC 4 cut(s) 486, 520, 643, 791
Ppu21I YACGTR 1 cut(s) 649
PpuMI RGGWCCY 1 cut(s) 842
PscI ACATGT 1 cut(s) 813
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 2 cut(s) 419, 575
PspCI CACGTG 1 cut(s) 649
PspEI GGTNACC 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 271
PspGI CCWGG 2 cut(s) 419, 575
PspN4I GGNNCC 4 cut(s) 367, 532, 682, 791
PspPI GGNCC 3 cut(s) 423, 579, 842
PspPPI RGGWCCY 1 cut(s) 842
PsuI RGATCY 1 cut(s) 80
PsyI GACNNNGTC 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 300
RsaI GTAC 2 cut(s) 587, 611
RsaNI GTAC 2 cut(s) 586, 610
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 5 cut(s) 276, 301, 547, 615, 724
Sau3AI GATC 3 cut(s) 80, 112, 427
Sau96I GGNCC 3 cut(s) 423, 579, 842
SchI GAGTC 4 cut(s) 486, 521, 644, 791
ScrFI CCNGG 4 cut(s) 191, 421, 577, 685
SduI GDGCHC 1 cut(s) 769
SfaNI GCATC 2 cut(s) 532, 864
Sfr274I CTCGAG 2 cut(s) 443, 509
SinI GGWCC 3 cut(s) 423, 579, 842
SlaI CTCGAG 2 cut(s) 443, 509
SmlI CTYRAG 3 cut(s) 108, 443, 509
SmoI CTYRAG 3 cut(s) 108, 443, 509
SseBI AGGCCT 1 cut(s) 806
SspMI CTAG 4 cut(s) 33, 48, 311, 743
StuI AGGCCT 1 cut(s) 806
StyD4I CCNGG 4 cut(s) 189, 419, 575, 683
TaaI ACNGT 1 cut(s) 661
TaiI ACGT 4 cut(s) 147, 396, 464, 651
TaqI TCGA 4 cut(s) 201, 414, 444, 510
TaqII GACCGA 1 cut(s) 322
TatI WGTACW 1 cut(s) 585
TauI GCSGC 4 cut(s) 278, 549, 617, 726
TfiI GAWTC 3 cut(s) 163, 691, 820
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseFI GTSAC 3 cut(s) 334, 358, 794
TseI GCWGC 1 cut(s) 300
Tsp45I GTSAC 3 cut(s) 334, 358, 794
TspDTI ATGAA 3 cut(s) 17, 64, 171
Tth111I GACNNNGTC 1 cut(s) 143
VpaK11BI GGWCC 3 cut(s) 423, 579, 842
XagI CCTNNNNNAGG 1 cut(s) 473
XceI RCATGY 1 cut(s) 817
XhoI CTCGAG 2 cut(s) 443, 509
XspI CTAG 4 cut(s) 33, 48, 311, 743
ZraI GACGTC 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.