FvH4_6g27140

ABC transporter

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
20856566 .. 20858807
2242 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27140.t1

Sequence Viewer

Length: 1509 bp
ATGCAGGTATATATAGGCAATGAGGGTTACGTTTACAAATTAAGAAAAGCCAGTTTGGTGTGTGAGCTTACCTTTCTAGCTAGCTACTCTCTAGTTCATCTCATAGCTTCTTTTTTCTCCTCTTTTTCCTCAATGAAGTTACCAATCAAGGCGCAAGATTCCAATACTGGCAAGAAACCTCAATATAGAATTAAGACCAAAGATCTTTGTTATGAATTAGCTTACCCAGTTGATGAATTCAAGTGGCTCAACTGCAGGAGGGAGGTGATCCCTAAAGCATACATTTTGAAGAATGTTGATTTTGAAGCTAGACCGGCAGAGATCACAGCTATTGTTGGTCCAAGTGGAGCTGGAAAGACAACATTGTTAGAAATAGTTGCTGGAATGGTCCCTCTTAACAGTACTACTGGCCAAGTCATCGTCAATAACAAGCCTATGAATCCTCAACATTTTCGGAGAGTGTCAGGTTATGTCAAACAAGAAGAAGCCCTCTTCCCACTGCTTTCTGTAGAAGAAACACTCATGTACAGCGCTCGTTTAAGGTACCACAGCAGGCGCGAGAAGGCCATGGCTAGAGTGACTGAGCTAATAAGGGAGCTTGGACTAGAACATGTTGCCAATGTAAGAATTGGTAGTGAATCAAACCGTGGGATTTCTGGTGGTGAAAAACGTAGAGTCTCAATCGGAGTTGATCTGGTACATGACCCTAGTGTTCTTCTGCTTGATGAGCCGACATCAGGACTAGACTCTTCTTCAGCGTTTGATGTAGCCTTGTTGCTTAAATCCATGGCTGCAACACAAGATAAGACAATTGTGCTAACCATCCACCAACCAGGTTTCAGAATTCTTGAGCTATTTGATCAAATTGTATTGCTATCTAATGGAAGCGTGCATCACCATGGATCCTTGCACATACTCGAGCAGCGACTCAGATATGCAGGTCATTCCCTTCCTCTATATGTTAATGTGCTTGAGTTTGCTATTGAAGTTATAAAAGACTTGGTTATACATATTGGTGAGAATGAAGTAAGAGGTGATGAGATAGAGGAATATAAGCATGTTAATGCATTTATAGAAAAGGCTGCTAATGAAGAAAAATTTGTGTATGCTAATTCCTGGTTCATAGAGGTTTGCATATTGGGACAAAGATTCTCTAGCAATATTTGCAGGAACAAACAGCTCTTTGCTGCAAGAACTATGCAGGCAGTGGTAGCAGGGTTTGTGCTGGGCACTATTTTCATGAATGCAGCTAATGACCCAAGCACAGCTAAATTGCAAACGCAAATTGGGTTTTTCGCCTTTAGCCTCACCTTCTTGTTCTCTTCCACAATAGAAGGTCTACCAATTTACCTGCTAGAGAAGACAATATTAATGAGAGAATGCTCCAGAGGTGCTTATAGAATCTATTCGTATGTCATATCAAACACTCTAGTATTTCTTCCTTTCCTATTAGGTGTGGCTCTTCTCTATTCTACGATTTCTACCCCGTCTATTGGTTCGTTGGACTAA

Protein Analysis

503

Amino Acids

56.2

Weight (kDa)

8.08

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_tran PF00005 96 - 246 3.9e-31 ABC transporter
ABC2_membrane PF01061 377 - 498 1.4e-18 ABC-2 type transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 992
Acc36I ACCTGC 2 cut(s) 929, 1359
Acc65I GGTACC 1 cut(s) 543
AccB1I GGYRCC 1 cut(s) 543
AccI GTMKAC 1 cut(s) 1339
AccII CGCG 1 cut(s) 558
AclWI GGATC 3 cut(s) 262, 897, 910
AcoI YGGCCR 1 cut(s) 409
AcsI RAATTY 3 cut(s) 236, 843, 1097
AcuI CTGAAG 1 cut(s) 738
AfaI GTAC 4 cut(s) 403, 527, 545, 699
AfeI AGCGCT 1 cut(s) 532
AfiI CCNNNNNNNGG 2 cut(s) 737, 1493
AflIII ACRYGT 1 cut(s) 610
AgsI TTSAA 4 cut(s) 241, 289, 305, 986
AjnI CCWGG 2 cut(s) 832, 1115
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 3 cut(s) 262, 897, 910
Ama87I CYCGRG 1 cut(s) 917
Aor51HI AGCGCT 1 cut(s) 532
AoxI GGCC 2 cut(s) 409, 564
ApeKI GCWGC 5 cut(s) 791, 922, 1082, 1187, 1247
ApoI RAATTY 3 cut(s) 236, 843, 1097
AseI ATTAAT 1 cut(s) 1370
Asp700I GAANNNNTTC 1 cut(s) 1405
Asp718I GGTACC 1 cut(s) 543
AspLEI GCGC 3 cut(s) 154, 533, 558
AspS9I GGNCC 2 cut(s) 338, 388
AsuHPI GGTGA 6 cut(s) 277, 674, 887, 1028, 1046, 1300
AsuNHI GCTAGC 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 917
AvaII GGWCC 2 cut(s) 338, 388
BaeGI GKGCMC 1 cut(s) 1232
BalI TGGCCA 1 cut(s) 411
BamHI GGATCC 1 cut(s) 902
BanI GGYRCC 1 cut(s) 543
BbsI GAAGAC 1 cut(s) 1367
BbvI GCAGC 5 cut(s) 778, 934, 1069, 1174, 1259
BccI CCATC 1 cut(s) 830
BciT130I CCWGG 2 cut(s) 834, 1117
BclI TGATCA 1 cut(s) 859
BcoDI GTCTC 1 cut(s) 682
BfmI CTRYAG 2 cut(s) 253, 507
BfoI RGCGCY 1 cut(s) 534
BfuAI ACCTGC 2 cut(s) 929, 1359
BglII AGATCT 1 cut(s) 202
BisI GCNGC 5 cut(s) 792, 923, 1083, 1188, 1248
BlsI GCNGC 5 cut(s) 793, 924, 1084, 1189, 1249
BmcAI AGTACT 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 834, 1117
Bme18I GGWCC 2 cut(s) 338, 388
BmeT110I CYCGRG 1 cut(s) 917
BmgT120I GGNCC 2 cut(s) 338, 388
BmiI GGNNCC 3 cut(s) 390, 545, 904
BmrFI CCNGG 2 cut(s) 834, 1117
BmrI ACTGGG 1 cut(s) 221
BmsI GCATC 1 cut(s) 901
BmtI GCTAGC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 221
BpiI GAAGAC 1 cut(s) 1367
BpmI CTGGAG 1 cut(s) 1369
BpuEI CTTGAG 2 cut(s) 869, 992
BsaJI CCNNGG 4 cut(s) 567, 646, 786, 898
Bsc4I CCNNNNNNNGG 2 cut(s) 737, 1493
Bse118I RCCGGY 1 cut(s) 313
Bse1I ACTGG 4 cut(s) 51, 172, 227, 412
Bse3DI GCAATG 1 cut(s) 25
BseBI CCWGG 2 cut(s) 834, 1117
BseDI CCNNGG 4 cut(s) 567, 646, 786, 898
BseGI GGATG 1 cut(s) 822
BseLI CCNNNNNNNGG 2 cut(s) 737, 1493
BseMI GCAATG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 573, 943
BseNI ACTGG 4 cut(s) 51, 172, 227, 412
BseRI GAGGAG 1 cut(s) 109
BseSI GKGCMC 1 cut(s) 1232
BseXI GCAGC 5 cut(s) 778, 934, 1069, 1174, 1259
BseYI CCCAGC 1 cut(s) 1225
Bsh1236I CGCG 1 cut(s) 558
BshFI GGCC 2 cut(s) 411, 566
BshNI GGYRCC 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 917
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 374, 1155
BslI CCNNNNNNNGG 2 cut(s) 737, 1493
BsmAI GTCTC 1 cut(s) 682
BsmFI GGGAC 2 cut(s) 374, 1155
BsmI GAATGC 2 cut(s) 1249, 1385
BsnI GGCC 2 cut(s) 411, 566
BsoBI CYCGRG 1 cut(s) 917
Bsp1286I GDGCHC 1 cut(s) 1232
Bsp1407I TGTACA 1 cut(s) 525
Bsp143I GATC 6 cut(s) 202, 267, 321, 691, 859, 902
Bsp19I CCATGG 3 cut(s) 567, 786, 898
BspANI GGCC 2 cut(s) 411, 566
BspCNI CTCAG 2 cut(s) 574, 942
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 1239
BspLI GGNNCC 3 cut(s) 390, 545, 904
BspMAI CTGCAG 1 cut(s) 257
BspMI ACCTGC 2 cut(s) 929, 1359
BspOI GCTAGC 1 cut(s) 84
BspPI GGATC 3 cut(s) 262, 897, 910
BspQI GCTCTTC 1 cut(s) 1467
BspT107I GGYRCC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 25
BsrFI RCCGGY 1 cut(s) 313
BsrGI TGTACA 1 cut(s) 525
BsrI ACTGG 4 cut(s) 51, 172, 227, 412
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 4 cut(s) 567, 646, 786, 898
BssMI GATC 6 cut(s) 202, 267, 321, 691, 859, 902
BssT1I CCWWGG 3 cut(s) 567, 786, 898
Bst2UI CCWGG 2 cut(s) 834, 1117
Bst4CI ACNGT 2 cut(s) 401, 647
Bst6I CTCTTC 4 cut(s) 497, 754, 1327, 1467
BstAPI GCANNNNNTGC 1 cut(s) 1164
BstAUI TGTACA 1 cut(s) 525
BstC8I GCNNGC 4 cut(s) 82, 554, 890, 1203
BstDEI CTNAG 2 cut(s) 582, 929
BstDSI CCRYGG 4 cut(s) 567, 646, 786, 898
BstF5I GGATG 1 cut(s) 822
BstFNI CGCG 1 cut(s) 558
BstH2I RGCGCY 1 cut(s) 534
BstHHI GCGC 3 cut(s) 154, 533, 558
BstKTI GATC 6 cut(s) 205, 270, 324, 694, 862, 905
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 6 cut(s) 202, 267, 321, 691, 859, 902
BstMWI GCNNNNNNNGC 4 cut(s) 314, 727, 1164, 1211
BstNI CCWGG 2 cut(s) 834, 1117
BstNSI RCATGY 2 cut(s) 614, 1061
BstSCI CCNGG 2 cut(s) 832, 1115
BstSFI CTRYAG 2 cut(s) 253, 507
BstSLI GKGCMC 1 cut(s) 1232
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 5 cut(s) 778, 934, 1069, 1174, 1259
BstV2I GAAGAC 1 cut(s) 1367
BstX2I RGATCY 2 cut(s) 202, 902
BstYI RGATCY 2 cut(s) 202, 902
BsuRI GGCC 2 cut(s) 411, 566
BtgI CCRYGG 4 cut(s) 567, 646, 786, 898
BtsCI GGATG 1 cut(s) 822
BtsI GCAGTG 2 cut(s) 497, 1212
BtsIMutI CAGTG 2 cut(s) 497, 1212
BveI ACCTGC 2 cut(s) 929, 1359
Cac8I GCNNGC 4 cut(s) 82, 554, 890, 1203
CciI TCATGA 1 cut(s) 1239
CfoI GCGC 3 cut(s) 154, 533, 558
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 338, 388
CsiI ACCWGGT 1 cut(s) 832
Csp6I GTAC 4 cut(s) 402, 526, 544, 698
CviAII CATG 8 cut(s) 523, 568, 611, 701, 787, 899, 1058, 1240
CviQI GTAC 4 cut(s) 402, 526, 544, 698
DdeI CTNAG 2 cut(s) 582, 929
DpnI GATC 6 cut(s) 204, 269, 323, 693, 861, 904
DpnII GATC 6 cut(s) 202, 267, 321, 691, 859, 902
EaeI YGGCCR 1 cut(s) 409
Eam1104I CTCTTC 4 cut(s) 497, 754, 1327, 1467
EarI CTCTTC 4 cut(s) 497, 754, 1327, 1467
Eco130I CCWWGG 3 cut(s) 567, 786, 898
Eco47I GGWCC 2 cut(s) 338, 388
Eco47III AGCGCT 1 cut(s) 532
Eco57I CTGAAG 1 cut(s) 738
Eco88I CYCGRG 1 cut(s) 917
EcoRI GAATTC 2 cut(s) 236, 843
EcoRII CCWGG 2 cut(s) 832, 1115
EcoT14I CCWWGG 3 cut(s) 567, 786, 898
EcoT22I ATGCAT 1 cut(s) 1069
ErhI CCWWGG 3 cut(s) 567, 786, 898
FaeI CATG 8 cut(s) 526, 571, 614, 704, 790, 902, 1061, 1243
FaqI GGGAC 2 cut(s) 374, 1155
FatI CATG 8 cut(s) 522, 567, 610, 700, 786, 898, 1057, 1239
FbaI TGATCA 1 cut(s) 859
FblI GTMKAC 1 cut(s) 1339
Fnu4HI GCNGC 5 cut(s) 792, 923, 1083, 1188, 1248
FokI GGATG 1 cut(s) 809
Fsp4HI GCNGC 5 cut(s) 792, 923, 1083, 1188, 1248
GlaI GCGC 3 cut(s) 153, 532, 557
GluI GCNGC 5 cut(s) 792, 923, 1083, 1188, 1248
GsaI CCCAGC 1 cut(s) 1229
GsuI CTGGAG 1 cut(s) 1369
HaeII RGCGCY 1 cut(s) 534
HaeIII GGCC 2 cut(s) 411, 566
HapII CCGG 1 cut(s) 314
HhaI GCGC 3 cut(s) 154, 533, 558
Hin1II CATG 8 cut(s) 526, 571, 614, 704, 790, 902, 1061, 1243
Hin6I GCGC 3 cut(s) 152, 531, 556
HinP1I GCGC 3 cut(s) 152, 531, 556
HinfI GANTC 8 cut(s) 158, 439, 638, 675, 746, 927, 1149, 1401
HpaII CCGG 1 cut(s) 314
HphI GGTGA 6 cut(s) 277, 674, 887, 1028, 1046, 1300
Hpy166II GTNNAC 2 cut(s) 34, 1340
Hpy188I TCNGA 4 cut(s) 456, 686, 842, 932
Hpy188III TCNNGA 4 cut(s) 738, 848, 1240, 1386
Hpy8I GTNNAC 2 cut(s) 34, 1340
HpyAV CCTTC 4 cut(s) 556, 959, 1321, 1328
HpyCH4III ACNGT 2 cut(s) 401, 647
HpyCH4IV ACGT 2 cut(s) 30, 670
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 727, 1164, 1211
HpyF3I CTNAG 2 cut(s) 582, 929
HpySE526I ACGT 2 cut(s) 30, 670
Hsp92II CATG 8 cut(s) 526, 571, 614, 704, 790, 902, 1061, 1243
HspAI GCGC 3 cut(s) 152, 531, 556
KpnI GGTACC 1 cut(s) 547
Ksp22I TGATCA 1 cut(s) 859
Kzo9I GATC 6 cut(s) 202, 267, 321, 691, 859, 902
LguI GCTCTTC 1 cut(s) 1467
LmnI GCTCC 3 cut(s) 347, 595, 1388
Lsp1109I GCAGC 5 cut(s) 778, 934, 1069, 1174, 1259
LweI GCATC 1 cut(s) 901
MabI ACCWGGT 1 cut(s) 832
MaeII ACGT 2 cut(s) 30, 670
MaeIII GTNAC 3 cut(s) 26, 138, 577
MalI GATC 6 cut(s) 204, 269, 323, 693, 861, 904
MboI GATC 6 cut(s) 202, 267, 321, 691, 859, 902
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 2 cut(s) 202, 902
MhlI GDGCHC 1 cut(s) 1232
MlsI TGGCCA 1 cut(s) 411
MluNI TGGCCA 1 cut(s) 411
MlyI GAGTC 3 cut(s) 684, 740, 921
MmeI TCCRAC 1 cut(s) 1482
Mox20I TGGCCA 1 cut(s) 411
Mph1103I ATGCAT 1 cut(s) 1069
MroXI GAANNNNTTC 1 cut(s) 1405
MscI TGGCCA 1 cut(s) 411
MseI TTAA 8 cut(s) 41, 192, 396, 539, 780, 963, 1062, 1370
MslI CAYNNNNRTG 3 cut(s) 897, 1014, 1062
Msp20I TGGCCA 1 cut(s) 411
MspI CCGG 1 cut(s) 314
MspR9I CCNGG 2 cut(s) 834, 1117
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 2 cut(s) 1249, 1385
MvaI CCWGG 2 cut(s) 834, 1117
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 4 cut(s) 314, 727, 1164, 1211
NcoI CCATGG 3 cut(s) 567, 786, 898
NdeII GATC 6 cut(s) 202, 267, 321, 691, 859, 902
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 8 cut(s) 526, 571, 614, 704, 790, 902, 1061, 1243
NlaIV GGNNCC 3 cut(s) 390, 545, 904
NmuCI GTSAC 1 cut(s) 577
NsiI ATGCAT 1 cut(s) 1069
NspI RCATGY 2 cut(s) 614, 1061
PaeR7I CTCGAG 1 cut(s) 917
PagI TCATGA 1 cut(s) 1239
PciI ACATGT 1 cut(s) 610
PciSI GCTCTTC 1 cut(s) 1467
PctI GAATGC 2 cut(s) 1249, 1385
PdmI GAANNNNTTC 1 cut(s) 1405
PfeI GAWTC 5 cut(s) 158, 439, 638, 1149, 1401
PkrI GCNGC 5 cut(s) 793, 924, 1084, 1189, 1249
PleI GAGTC 3 cut(s) 683, 740, 921
PpsI GAGTC 3 cut(s) 683, 740, 921
PscI ACATGT 1 cut(s) 610
PshBI ATTAAT 1 cut(s) 1370
PsiI TTATAA 1 cut(s) 992
Psp6I CCWGG 2 cut(s) 832, 1115
PspFI CCCAGC 1 cut(s) 1225
PspGI CCWGG 2 cut(s) 832, 1115
PspN4I GGNNCC 3 cut(s) 390, 545, 904
PspPI GGNCC 2 cut(s) 338, 388
PspXI VCTCGAGB 1 cut(s) 917
PstI CTGCAG 1 cut(s) 257
PsuI RGATCY 2 cut(s) 202, 902
RsaI GTAC 4 cut(s) 403, 527, 545, 699
RsaNI GTAC 4 cut(s) 402, 526, 544, 698
RseI CAYNNNNRTG 3 cut(s) 897, 1014, 1062
SapI GCTCTTC 1 cut(s) 1467
SaqAI TTAA 8 cut(s) 41, 192, 396, 539, 780, 963, 1062, 1370
SatI GCNGC 5 cut(s) 792, 923, 1083, 1188, 1248
Sau3AI GATC 6 cut(s) 202, 267, 321, 691, 859, 902
Sau96I GGNCC 2 cut(s) 338, 388
ScaI AGTACT 1 cut(s) 403
SchI GAGTC 3 cut(s) 684, 740, 921
ScrFI CCNGG 2 cut(s) 834, 1117
SduI GDGCHC 1 cut(s) 1232
SexAI ACCWGGT 1 cut(s) 832
SfaNI GCATC 1 cut(s) 901
SfcI CTRYAG 2 cut(s) 253, 507
Sfr274I CTCGAG 1 cut(s) 917
SinI GGWCC 2 cut(s) 338, 388
SlaI CTCGAG 1 cut(s) 917
SmiMI CAYNNNNRTG 3 cut(s) 897, 1014, 1062
SmlI CTYRAG 3 cut(s) 848, 917, 971
SmoI CTYRAG 3 cut(s) 848, 917, 971
SspI AATATT 2 cut(s) 1162, 1368
StyD4I CCNGG 2 cut(s) 832, 1115
StyI CCWWGG 3 cut(s) 567, 786, 898
TaaI ACNGT 2 cut(s) 401, 647
TaiI ACGT 2 cut(s) 33, 673
TaqI TCGA 1 cut(s) 918
TatI WGTACW 2 cut(s) 401, 525
TfiI GAWTC 5 cut(s) 158, 439, 638, 1149, 1401
Tru1I TTAA 8 cut(s) 41, 192, 396, 539, 780, 963, 1062, 1370
Tru9I TTAA 8 cut(s) 41, 192, 396, 539, 780, 963, 1062, 1370
TscAI CASTG 2 cut(s) 504, 1212
TseFI GTSAC 1 cut(s) 577
TseI GCWGC 5 cut(s) 791, 922, 1082, 1187, 1247
Tsp45I GTSAC 1 cut(s) 577
TspRI CASTG 2 cut(s) 504, 1212
VpaK11BI GGWCC 2 cut(s) 338, 388
VspI ATTAAT 1 cut(s) 1370
XapI RAATTY 3 cut(s) 236, 843, 1097
XceI RCATGY 2 cut(s) 614, 1061
XhoI CTCGAG 1 cut(s) 917
XmiI GTMKAC 1 cut(s) 1339
XmnI GAANNNNTTC 1 cut(s) 1405
ZrmI AGTACT 1 cut(s) 403
Zsp2I ATGCAT 1 cut(s) 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.