Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005303

Physical Location & Seq

Genomic Coordinates Forward (+)

31036203 .. 31039475

Gene Structure 3273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0285000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCTTGATCAGTGCCAAAAGTTCCCTAGAAATCAGCTCTATGTAACCTGCCATGTCCACAGCAGACACGAGAGTGCAGAAGACAAAGAGTTCGGTTTCTGTAGTGCATGGGAGTTTCAAGCTCAAGCATGTATTGAAGCAGATCTCGGTGCTCACTCACCACGGTTATGGGAGACAAACACCAAATACGAGTCTTCTCCTTTGCTCCCCCAAAACCATCACTACAGTGATCTTTCTCCCACGTCACGCAGAAGGGTGATTCTTGAAAGCAGGAGTGAACTTATGCAGATGATTCAAAACATGCCAGAGTCATATCATGAACTTTCTCTGAAAGATATTGTTGATGAGCAACAAGGTATGCAGAAGGCTGGAGAAGGCACTGATGTTGAAGAGAAGAGTTTCGACTTCAACACTCAAGCTCAAATTAAGAAGCAGAAGAAGAAAATAACATACAAGACTAGACAGATATCGCGGACTTCAAGTATGGAAAGCGAAACTTTCCTAATCAAGATGTTCTTTCCAACTTTTCTAGGCTCAAAGAAGAAAGCAAAAGTAGCTGGGAATCGCTCAAAAGTTTCCCCAAGGCCATCATTTGAAGAACCTGAGAACCATAAAGATTTGTGTGTTGAAGGCACAAGCAGCGGAAGAAGGTTTTGTGAGGACGATACCTTACCTGGTTGCTGGACCTTCTTCCGGAGCAAGAAAGGCAAAAGCAAAAGACTAAGGGCATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko01523 ko02010 ko04976 map01523 map02010 map04976

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

244

Amino Acids

28.23

Weight (kDa)

8.83

Isoelectric Point (pI)

64.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53270
fragaria_vesca	FvH4_3g18590 FvH4_6g27140
malus_domestica	MD03G1240800.v1.1 MD11G1260200.v1.1
prunus_persica	Prupe.3G122400_v2.0.a1 Prupe.3G122400_v2.0.a1 Prupe.4G168100_v2.0.a1
pyrus_communis	pycom03g18730 pycom11g22970
rosa_chinensis	RchiOBHm_Chr2g0129131 RchiOBHm_Chr5g0031401
rosa_laevigata	RLG00000019057 RLG00000033304
rosa_multiflora	Rmu_sc0007782.1_g000009 Rmu_sc0009045.1_g000001 Rmu_sc0018148.1_g000005
rosa_roxburghii	Rroxscaffold_1G00048940 Rroxscaffold_2G00114830
rosa_rugosa	Rorug02G0285000 Rorug05G0125000
rosa_samantha	Rh2AG337100 Rh2BG345100 Rh2CG324500 Rh2DG361900 Rh5BG217300 Rh5CG241100 Rh5DG222700
rosa_wichuraiana	Rw2G027340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccII	CGCG	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	693
AciI	CCGC	2 cut(s)	472, 642
AfiI	CCNNNNNNNGG	1 cut(s)	693
AgsI	TTSAA	9 cut(s)	119, 137, 266, 296, 389, 409, 480, 596, 629
AjiI	CACGTC	1 cut(s)	243
AjnI	CCWGG	1 cut(s)	673
AleI	CACNNNNGTG	2 cut(s)	72, 225
AluBI	AGCT	4 cut(s)	37, 122, 419, 557
AluI	AGCT	4 cut(s)	37, 122, 419, 557
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	167
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	1 cut(s)	639
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	684
AsuHPI	GGTGA	2 cut(s)	150, 268
AvaII	GGWCC	1 cut(s)	684
BauI	CACGAG	1 cut(s)	68
BbsI	GAAGAC	2 cut(s)	87, 186
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	651
BccI	CCATC	2 cut(s)	225, 595
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	167
BfaI	CTAG	3 cut(s)	27, 459, 530
BfmI	CTRYAG	2 cut(s)	100, 223
BfuAI	ACCTGC	1 cut(s)	56
BglII	AGATCT	1 cut(s)	142
BisI	GCNGC	1 cut(s)	640
BlsI	GCNGC	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	675
Bme18I	GGWCC	1 cut(s)	684
BmgBI	CACGTC	1 cut(s)	243
BmgT120I	GGNCC	1 cut(s)	684
BmrFI	CCNGG	1 cut(s)	675
BpiI	GAAGAC	2 cut(s)	87, 186
BpmI	CTGGAG	1 cut(s)	390
BpuEI	CTTGAG	2 cut(s)	108, 399
BsaJI	CCNNGG	2 cut(s)	161, 581
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	1 cut(s)	693
BseAI	TCCGGA	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	161, 581
BseLI	CCNNNNNNNGG	1 cut(s)	693
BseMII	CTCAG	1 cut(s)	594
BseXI	GCAGC	1 cut(s)	651
BseYI	CCCAGC	1 cut(s)	557
BsgI	GTGCAG	1 cut(s)	96
Bsh1236I	CGCG	1 cut(s)	472
BshFI	GGCC	1 cut(s)	586
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	694
BslI	CCNNNNNNNGG	1 cut(s)	693
BsmAI	GTCTC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	3 cut(s)	7, 142, 229
BspACI	CCGC	2 cut(s)	472, 642
BspANI	GGCC	1 cut(s)	586
BspCNI	CTCAG	1 cut(s)	595
BspEI	TCCGGA	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	472
BspHI	TCATGA	1 cut(s)	316
BspMI	ACCTGC	1 cut(s)	56
BssECI	CCNNGG	2 cut(s)	161, 581
BssMI	GATC	3 cut(s)	7, 142, 229
BssSI	CACGAG	1 cut(s)	68
BssT1I	CCWWGG	1 cut(s)	581
Bst2BI	CACGAG	1 cut(s)	68
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	165, 227
Bst6I	CTCTTC	2 cut(s)	384, 389
BstC8I	GCNNGC	1 cut(s)	730
BstDEI	CTNAG	2 cut(s)	603, 722
BstDSI	CCRYGG	1 cut(s)	161
BstFNI	CGCG	1 cut(s)	472
BstKTI	GATC	3 cut(s)	10, 145, 232
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	3 cut(s)	7, 142, 229
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 639, 705
BstNI	CCWGG	1 cut(s)	675
BstNSI	RCATGY	3 cut(s)	132, 304, 732
BstSCI	CCNGG	1 cut(s)	673
BstSFI	CTRYAG	2 cut(s)	100, 223
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	1 cut(s)	651
BstV2I	GAAGAC	2 cut(s)	87, 186
BstX2I	RGATCY	1 cut(s)	142
BstXI	CCANNNNNNTGG	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	586
BtgI	CCRYGG	1 cut(s)	161
BtrI	CACGTC	1 cut(s)	243
BtsIMutI	CAGTG	3 cut(s)	17, 232, 378
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	730
CciI	TCATGA	1 cut(s)	316
Cfr13I	GGNCC	1 cut(s)	684
CsiI	ACCWGGT	1 cut(s)	673
CviAII	CATG	6 cut(s)	53, 108, 129, 301, 317, 729
CviJI	RGCY	7 cut(s)	37, 122, 368, 419, 534, 557, 586
CviKI_1	RGCY	7 cut(s)	37, 122, 368, 419, 534, 557, 586
DdeI	CTNAG	2 cut(s)	603, 722
DpnI	GATC	3 cut(s)	9, 144, 231
DpnII	GATC	3 cut(s)	7, 142, 229
Eam1104I	CTCTTC	2 cut(s)	384, 389
EarI	CTCTTC	2 cut(s)	384, 389
Eco130I	CCWWGG	1 cut(s)	581
Eco32I	GATATC	1 cut(s)	468
Eco47I	GGWCC	1 cut(s)	684
EcoRII	CCWGG	1 cut(s)	673
EcoRV	GATATC	1 cut(s)	468
EcoT14I	CCWWGG	1 cut(s)	581
ErhI	CCWWGG	1 cut(s)	581
FaeI	CATG	6 cut(s)	56, 111, 132, 304, 320, 732
FalI	AAGNNNNNCTT	4 cut(s)	481, 513, 500, 532
FatI	CATG	6 cut(s)	52, 107, 128, 300, 316, 728
FbaI	TGATCA	1 cut(s)	7
Fnu4HI	GCNGC	1 cut(s)	640
Fsp4HI	GCNGC	1 cut(s)	640
FspBI	CTAG	3 cut(s)	27, 459, 530
GluI	GCNGC	1 cut(s)	640
GsaI	CCCAGC	1 cut(s)	561
GsuI	CTGGAG	1 cut(s)	390
HaeIII	GGCC	1 cut(s)	586
HapII	CCGG	1 cut(s)	694
Hin1II	CATG	6 cut(s)	56, 111, 132, 304, 320, 732
HinfI	GANTC	5 cut(s)	191, 259, 292, 308, 562
HpaII	CCGG	1 cut(s)	694
HphI	GGTGA	2 cut(s)	150, 268
Hpy166II	GTNNAC	2 cut(s)	58, 278
Hpy188I	TCNGA	1 cut(s)	330
Hpy188III	TCNNGA	4 cut(s)	263, 317, 508, 694
Hpy8I	GTNNAC	2 cut(s)	58, 278
HpyAV	CCTTC	6 cut(s)	246, 358, 368, 623, 642, 697
HpyCH4III	ACNGT	2 cut(s)	165, 227
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	4 cut(s)	77, 107, 286, 361
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 639, 705
HpyF3I	CTNAG	2 cut(s)	603, 722
HpySE526I	ACGT	1 cut(s)	242
Hsp92II	CATG	6 cut(s)	56, 111, 132, 304, 320, 732
Kpn2I	TCCGGA	1 cut(s)	693
Ksp22I	TGATCA	1 cut(s)	7
Kzo9I	GATC	3 cut(s)	7, 142, 229
LmnI	GCTCC	2 cut(s)	210, 696
Lsp1109I	GCAGC	1 cut(s)	651
MabI	ACCWGGT	1 cut(s)	673
MaeI	CTAG	3 cut(s)	27, 459, 530
MaeII	ACGT	1 cut(s)	242
MaeIII	GTNAC	2 cut(s)	43, 243
MalI	GATC	3 cut(s)	9, 144, 231
MboI	GATC	3 cut(s)	7, 142, 229
MflI	RGATCY	1 cut(s)	142
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	200, 317
MmeI	TCCRAC	1 cut(s)	545
MnlI	CCTC	1 cut(s)	652
MroI	TCCGGA	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	398
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	3 cut(s)	72, 166, 225
MspA1I	CMGCKG	1 cut(s)	642
MspI	CCGG	1 cut(s)	694
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	3 cut(s)	554, 639, 705
NdeII	GATC	3 cut(s)	7, 142, 229
NlaIII	CATG	6 cut(s)	56, 111, 132, 304, 320, 732
NmuCI	GTSAC	1 cut(s)	243
NspI	RCATGY	3 cut(s)	132, 304, 732
OliI	CACNNNNGTG	2 cut(s)	72, 225
PaeI	GCATGC	1 cut(s)	732
PagI	TCATGA	1 cut(s)	316
PdmI	GAANNNNTTC	1 cut(s)	398
PfeI	GAWTC	3 cut(s)	259, 292, 562
PkrI	GCNGC	1 cut(s)	641
PleI	GAGTC	2 cut(s)	199, 316
PpsI	GAGTC	2 cut(s)	199, 316
Psp6I	CCWGG	1 cut(s)	673
PspFI	CCCAGC	1 cut(s)	557
PspGI	CCWGG	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	142
RseI	CAYNNNNRTG	3 cut(s)	72, 166, 225
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	1 cut(s)	640
Sau3AI	GATC	3 cut(s)	7, 142, 229
Sau96I	GGNCC	1 cut(s)	684
SchI	GAGTC	2 cut(s)	200, 317
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	1 cut(s)	154
SexAI	ACCWGGT	1 cut(s)	673
SfcI	CTRYAG	2 cut(s)	100, 223
SinI	GGWCC	1 cut(s)	684
SmiMI	CAYNNNNRTG	3 cut(s)	72, 166, 225
SmlI	CTYRAG	2 cut(s)	123, 414
SmoI	CTYRAG	2 cut(s)	123, 414
SphI	GCATGC	1 cut(s)	732
Sse9I	AATT	1 cut(s)	423
SsiI	CCGC	2 cut(s)	472, 642
SspMI	CTAG	3 cut(s)	27, 459, 530
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	1 cut(s)	581
TaaI	ACNGT	2 cut(s)	165, 227
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	1 cut(s)	402
TasI	AATT	1 cut(s)	423
TfiI	GAWTC	3 cut(s)	259, 292, 562
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	3 cut(s)	17, 232, 385
TseFI	GTSAC	1 cut(s)	243
TseI	GCWGC	1 cut(s)	639
Tsp45I	GTSAC	1 cut(s)	243
TspDTI	ATGAA	1 cut(s)	333
TspRI	CASTG	3 cut(s)	17, 232, 385
VpaK11BI	GGWCC	1 cut(s)	684
XceI	RCATGY	3 cut(s)	132, 304, 732
XmnI	GAANNNNTTC	1 cut(s)	398
XspI	CTAG	3 cut(s)	27, 459, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.